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annotate test-data/summarize/kraken2_output.json @ 2:a7387ce2a8ca draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80
author iuc
date Wed, 03 Jul 2024 12:06:58 +0000
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6e868bf6c38e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
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1 [{"analysis_software_version": "2.1.2", "reference_database_version": "PlusPF_16", "analysis_software_name": "kraken2", "results": [{"name": "kraken2_report", "file_path": "tests/data/dummy/kraken2/taxonomy_report.tsv", "hid": "12345", "galaxy_id": null, "content": [{"fragment_coverage": 100.0, "fragment_number": 95, "assigned_fragment_number": 0, "rank_code": "R", "ncbi_taxonomic_id": 1, "scientific_name": "root"}, {"fragment_coverage": 100.0, "fragment_number": 95, "assigned_fragment_number": 0, "rank_code": "R1", "ncbi_taxonomic_id": 131567, "scientific_name": "cellular_organisms"}, {"fragment_coverage": 100.0, "fragment_number": 95, "assigned_fragment_number": 4, "rank_code": "D", "ncbi_taxonomic_id": 2, "scientific_name": "Bacteria"}, {"fragment_coverage": 95.79, "fragment_number": 91, "assigned_fragment_number": 0, "rank_code": "D1", "ncbi_taxonomic_id": 1783272, "scientific_name": "Terrabacteria_group"}, {"fragment_coverage": 95.79, "fragment_number": 91, "assigned_fragment_number": 0, "rank_code": "P", "ncbi_taxonomic_id": 1239, "scientific_name": "Firmicutes"}, {"fragment_coverage": 95.79, "fragment_number": 91, "assigned_fragment_number": 4, "rank_code": "C", "ncbi_taxonomic_id": 91061, "scientific_name": "Bacilli"}, {"fragment_coverage": 89.47, "fragment_number": 85, "assigned_fragment_number": 8, "rank_code": "O", "ncbi_taxonomic_id": 186826, "scientific_name": "Lactobacillales"}, {"fragment_coverage": 78.95, "fragment_number": 75, "assigned_fragment_number": 0, "rank_code": "F", "ncbi_taxonomic_id": 81852, "scientific_name": "Enterococcaceae"}, {"fragment_coverage": 78.95, "fragment_number": 75, "assigned_fragment_number": 7, "rank_code": "G", "ncbi_taxonomic_id": 1350, "scientific_name": "Enterococcus"}, {"fragment_coverage": 66.32, "fragment_number": 63, "assigned_fragment_number": 42, "rank_code": "S", "ncbi_taxonomic_id": 1351, "scientific_name": "Enterococcus_faecalis"}]}, {"name": "seq_classification_file_path", "file_path": "tests/data/dummy/kraken2/taxonomy_result.tsv", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": true}]