diff test-data/recentrifuge/rcf_data.tsv @ 0:6e868bf6c38e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/recentrifuge/rcf_data.tsv	Tue Apr 30 08:42:33 2024 +0000
@@ -0,0 +1,296 @@
+Samples	/storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001	/storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001	/storage/scratch/piemari/60579059/recentrifuge/10_Enterococcus_faecalis_S17_L001	Details	Details
+Stats	count	unassigned	score	Rank	Name
+Id					
[phone]	23.406576938256993	no_rank	root
[phone]	23.395425082794883	superkingdom	Bacteria
[phone]	2.5291006275765358	phylum	Proteobacteria
[phone]	2.482047572064056	class	Gammaproteobacteria
[phone]	2.457941868298954	order	Enterobacterales
[phone]	2.460424106929107	family	Enterobacteriaceae
[phone]	3.246096990938595	no_rank	Klebsiella/Raoultella group
+570	293	0	3.246096990938595	genus	Klebsiella
+573	37	37	0.8707595857425035	species	Klebsiella pneumoniae
[phone]	3.5894074752833425	species	Klebsiella quasipneumoniae
[phone]	3.5108263106101574	class	Alphaproteobacteria
[phone]	3.9118522954498163	order	Rhodobacterales
[phone]	3.9118522954498163	family	Rhodobacteraceae
[phone]	5.003000134822521	genus	Tritonibacter
[phone]	5.003000134822521	species	Tritonibacter mobilis
+68525	8	2	6.4392025411184886	subphylum	delta/epsilon subdivisions
+29547	6	0	6.491794757763988	class	Epsilonproteobacteria
[phone]	6.491794757763988	order	Campylobacterales
[phone]	2.670556919903863	phylum	Spirochaetes
[phone]	2.670556919903863	class	Spirochaetia
[phone]	2.670556919903863	order	Brachyspirales
[phone]	2.670556919903863	family	Brachyspiraceae
+29521	8	0	2.670556919903863	genus	Brachyspira
+52584	8	0	2.670556919903863	species	Brachyspira pilosicoli
[phone]	2.670556919903863	strain	Brachyspira pilosicoli 95/1000
[phone]	5.666318593923775	no_rank	PVC group
[phone]	6.1710253562749955	phylum	Chlamydiae
[phone]	6.1710253562749955	class	Chlamydiia
[phone]	6.1710253562749955	order	Parachlamydiales
+92713	8	0	6.1710253562749955	family	Parachlamydiaceae
+83551	8	0	6.1710253562749955	genus	Parachlamydia
+83552	8	0	6.1710253562749955	species	Parachlamydia acanthamoebae
[phone]	6.1710253562749955	strain	Parachlamydia acanthamoebae UV-7
[phone]	2.006752928257857	no_rank	FCB group
[phone]	2.006752928257857	no_rank	Bacteroidetes/Chlorobi group
+976	66	0	2.006752928257857	phylum	Bacteroidota
[phone]	4.41718651898131	class	Flavobacteriia
[phone]	4.41718651898131	order	Flavobacteriales
[phone]	5.956891819839705	family	Flavobacteriaceae
[phone]	1.8510110175506516	family	Weeksellaceae
[phone]	1.8510110175506516	no_rank	Chryseobacterium group
+59732	6	6	1.8510110175506516	genus	Chryseobacterium
[phone]	1.2354141792263518	class	Bacteroidia
[phone]	1.2354141792263518	order	Bacteroidales
+815	50	0	1.2354141792263518	family	Bacteroidaceae
+816	50	0	1.2354141792263518	genus	Bacteroides
+817	50	50	1.2354141792263518	species	Bacteroides fragilis
[phone]	1652	23.34001268644121	no_rank	Terrabacteria group
[phone]	23.34408417992166	phylum	Firmicutes
[phone]	26463	23.367281250244677	class	Bacilli
[phone]	1.5310126165432292	order	Bacillales
[phone]	1.6488807818855296	family	Staphylococcaceae
[phone]	1.6529169672137187	genus	Staphylococcus
[phone]	4.134921158621555	species	Staphylococcus aureus
+1283	9	9	1.1011853849280868	species	Staphylococcus haemolyticus
[phone]	0.8554142297734083	species	Staphylococcus cohnii
[phone]	0.9949576979684763	species_group	Staphylococcus intermedius group
[phone]	0.9949576979684763	species	Staphylococcus pseudintermedius
[phone]	0.793093163911496	genus	Mammaliicoccus
+1296	8	8	0.793093163911496	species	Mammaliicoccus sciuri
[phone]	1.2032272261636583	family	Bacillaceae
[phone]	1.0549176203970638	genus	Bacillus
[phone]	1.1850461843452467	species_group	Bacillus cereus group
[phone]	1.1096346346273416	species	Bacillus anthracis
+1396	8	8	1.0777632709036333	species	Bacillus cereus
[phone]	1.6198538082960143	species	Bacillus thuringiensis
[phone]	0.8301699316132318	no_rank	unclassified Bacillus (in: Bacteria)
[phone]	1.028818211280399	species_group	Bacillus subtilis group
[phone]	0.9773258338876348	species_subgroup	Bacillus amyloliquefaciens group
[phone]	1.0423283671465575	species	Bacillus amyloliquefaciens
[phone]	0.8648197655965195	species	Bacillus velezensis
[phone]	3.6032022418134697	genus	Anoxybacillus
[phone]	4.178868577006367	species	Anoxybacillus caldiproteolyticus
[phone]	2.672897239210963	no_rank	unclassified Anoxybacillus
[phone]	2.672897239210963	species	Anoxybacillus sp. PDR2
[phone]	0.6082599491575995	genus	Heyndrickxia
[phone]	0.4574625508975431	species	Heyndrickxia oleronia
[phone]	4.842030537629395	species	Heyndrickxia vini
[phone]	0.8776692512548797	family	Planococcaceae
+1372	6	6	1.183068030563869	genus	Planococcus
[phone]	0.8690075588200579	family	Listeriaceae
[phone]	0.9052546679909343	genus	Listeria
[phone]	1.2111399791152304	family	Paenibacillaceae
[phone]	1.2111399791152304	genus	Paenibacillus
[phone]	0.7696180525672581	family	Alicyclobacillaceae
[phone]	0.6676970796195962	no_rank	Bacillales incertae sedis
[phone]	13929	23.438078410183238	order	Lactobacillales
[phone]	8.950766344236197	family	Streptococcaceae
[phone]	9.324347536844721	genus	Streptococcus
[phone]	1.5477643732288435	species	Streptococcus suis
[phone]	3.96659053092353	species	Streptococcus thermophilus
[phone]	2.1198590513226216	species	Streptococcus agalactiae
[phone]	1.30377206625794	species	Streptococcus pneumoniae
[phone]	1.1410197570750837	species	Streptococcus pyogenes
[phone]	4.238633601332688	species	Streptococcus parauberis
[phone]	4.466371036054079	species	Streptococcus cristatus
[phone]	4.466371036054079	strain	Streptococcus cristatus AS 1.3089
[phone]	5.907772289285088	species_group	Streptococcus dysgalactiae group
[phone]	6.002867303618146	species	Streptococcus equi
[phone]	6.002867303618146	subspecies	Streptococcus equi subsp. zooepidemicus
[phone]	12.057447943466315	species	Streptococcus gallolyticus
[phone]	12.06105003425735	subspecies	Streptococcus gallolyticus subsp. gallolyticus
[phone]	12.06105003425735	strain	Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
[phone]	4.040673378780668	no_rank	unclassified Streptococcus
[phone]	1.8038867754253172	genus	Lactococcus
[phone]	2.9759019163062628	species	Lactococcus lactis
+1360	68	9	3.1673295430623827	subspecies	Lactococcus lactis subsp. lactis
[phone]	3.3693793853069898	strain	Lactococcus lactis subsp. lactis IO-1
[phone]	2.8685547465494197	species	Lactococcus cremoris
[phone]	1.0441656096319267	species	Lactococcus garvieae
[phone]	1.528012433305227	species	Lactococcus raffinolactis
[phone]	2.0332664205808824	no_rank	unclassified Lactococcus
[phone]	2.091019486184282	species	Lactococcus sp. LG1267
[phone]	1.2333772766877353	family	Lactobacillaceae
+1253	9	9	1.2609888230893362	genus	Pediococcus
[phone]	1.0157277094629367	genus	Lactobacillus
[phone]	1.2357711002890166	species	Lactobacillus iners
+46255	6	6	0.7397900915153407	genus	Weissella
[phone]	1.419764724364403	genus	Limosilactobacillus
[phone]	1.6054278158689648	genus	Lacticaseibacillus
[phone]	1.2858255140682764	genus	Lactiplantibacillus
[phone]	1.2858255140682764	species	Lactiplantibacillus plantarum
[phone]	1.7265763187666388	genus	Latilactobacillus
[phone]	1.5066888443924613	species	Latilactobacillus sakei
[phone]	1.398328241873101	genus	Levilactobacillus
+1580	9	9	1.398328241873101	species	Levilactobacillus brevis
[phone]	0.598606789402397	genus	Ligilactobacillus
+1624	7	7	0.7636517432199416	species	Ligilactobacillus salivarius
[phone]	1.2492772274230424	genus	Loigolactobacillus
[phone]	23.559535176620216	family	Enterococcaceae
[phone]	64275	23.566991570231448	genus	Enterococcus
[phone]	1510052	23.668248263678578	species	Enterococcus faecalis
[phone]	0.38435018791238007	strain	Enterococcus faecalis V583
[phone]	0.40064354059738017	strain	Enterococcus faecalis OG1RF
[phone]	2.8545355118080313	strain	Enterococcus faecalis ARO1/DG
[phone]	3.57789453794821	strain	Enterococcus faecalis R712
[phone]	0.9432657281093839	strain	Enterococcus faecalis EnGen0107
[phone]	8.186838413433843	strain	Enterococcus faecalis ATCC 29212
[phone]	2.0340956240102512	strain	Enterococcus faecalis D32
[phone]	13491	3.6306104825402294	strain	Enterococcus faecalis DENG1
[phone]	2.591998705389451	species	Enterococcus faecium
[phone]	1.4376070661915603	strain	Enterococcus faecium ATCC 8459 = NRRL B-2354
+1353	6	6	1.3396929056537363	species	Enterococcus gallinarum
[phone]	1.2135478557261825	species	Enterococcus hirae
[phone]	3.4731254588207925	species	Enterococcus avium
[phone]	3.6337486681979128	species	Enterococcus casseliflavus
[phone]	1.2180773813893313	species	Enterococcus cecorum
[phone]	4.158614968772894	species	Enterococcus durans
[phone]	3.7767835297172416	species	Enterococcus mundtii
[phone]	2.495243825038598	species	Enterococcus rotai
[phone]	3.5229405344436837	species	Enterococcus gilvus
[phone]	2.580826752808647	species	Enterococcus saigonensis
[phone]	7.807370084132559	species	Enterococcus wangshanyuanii
[phone]	1.764832744365358	no_rank	unclassified Enterococcus
[phone]	1.804257856185198	species	Enterococcus sp. M190262
[phone]	1.5892104699251237	genus	Vagococcus
[phone]	2.7248547482928465	species	Vagococcus carniphilus
[phone]	1.4273307820801826	species	Vagococcus penaei
[phone]	1.6019980684696447	species	Vagococcus hydrophili
+33969	9	0	1.4531669487922143	genus	Melissococcus
+33970	9	9	1.4531669487922143	species	Melissococcus plutonius
[phone]	1.221592140263402	genus	Tetragenococcus
[phone]	1.4419914958056321	family	Aerococcaceae
+1375	17	7	1.6149265102205854	genus	Aerococcus
[phone]	1.5748583749325622	species	Aerococcus viridans
[phone]	0.8603355588458771	genus	Suicoccus
[phone]	0.8603355588458771	species	Suicoccus acidiformans
[phone]	2.818108437721708	family	Carnobacteriaceae
[phone]	2.8269564507766582	genus	Carnobacterium
[phone]	5.768927251679546	species	Carnobacterium maltaromaticum
[phone]	0.8868865283829857	species	Carnobacterium inhibens
[phone]	0.8868865283829857	subspecies	Carnobacterium inhibens subsp. gilichinskyi
[phone]	1.5168016352448308	no_rank	unclassified Carnobacterium
[phone]	1.5168016352448308	species	Carnobacterium sp. 17-4
[phone]	2.9328747714756394	genus	Jeotgalibaca
[phone]	1.7953874695058052	class	Clostridia
[phone]	1.75553519563304	order	Eubacteriales
[phone]	2.0738127026600917	family	Clostridiaceae
+1485	44	9	2.0738127026600917	genus	Clostridium
+1491	6	6	5.854468629326717	species	Clostridium botulinum
+1502	29	1	1.5883848967108667	species	Clostridium perfringens
[phone]	1.5400709119295324	strain	Clostridium perfringens F262
[phone]	5.110117753725923	family	Lachnospiraceae
[phone]	9.481396423792944	genus	Anaerostipes
[phone]	9.481396423792944	species	Anaerostipes hadrus
[phone]	1.615475527020151	family	Peptostreptococcaceae
[phone]	1.620142878684913	genus	Clostridioides
[phone]	1.620142878684913	species	Clostridioides difficile
[phone]	3.077947620267509	class	Erysipelotrichia
[phone]	3.077947620267509	order	Erysipelotrichales
[phone]	3.077947620267509	family	Erysipelotrichaceae
[phone]	6.446806729756411	class	Tissierellia
[phone]	6.446806729756411	order	Tissierellales
[phone]	6.446806729756411	family	Peptoniphilaceae
[phone]	6.446806729756411	genus	Peptoniphilus
[phone]	6.502217253636913	species	Peptoniphilus ivorii
[phone]	1.8529176000849532	phylum	Actinobacteria
[phone]	1.8529176000849532	class	Actinomycetia
+85006	7	7	6.253699226891209	order	Micrococcales
[phone]	0.7209126998313955	order	Streptomycetales
+2062	33	0	0.7209126998313955	family	Streptomycetaceae
+1883	33	5	0.7209126998313955	genus	Streptomyces
[phone]	0.781301999103657	no_rank	unclassified Streptomyces
[phone]	0.6282086319176973	species	Streptomyces sp. ICC1
[phone]	1.3426443454521761	species	Streptomyces sp. ICC4
[phone]	1.7949411008239513	phylum	Tenericutes
+31969	7	0	1.295527684915119	class	Mollicutes
+2085	7	0	1.295527684915119	order	Mycoplasmatales
+2092	7	1	1.295527684915119	family	Mycoplasmataceae
[phone]	1.4264149521288634	genus	Mycoplasmopsis
[phone]	2.2705782121667033	order	Mycoplasmoidales
[phone]	1.396993081280134	family	Metamycoplasmataceae
[phone]	1.396993081280134	genus	Metamycoplasma
+2098	8	8	1.396993081280134	species	Metamycoplasma hominis
+2157	31	0	4.238254159773117	superkingdom	Archaea
+28890	7	0	2.6483733912147787	phylum	Euryarchaeota
[phone]	2.6483733912147787	no_rank	Methanomada group
[phone]	2.6483733912147787	class	Methanobacteria
+2158	7	0	2.6483733912147787	order	Methanobacteriales
+2159	7	0	2.6483733912147787	family	Methanobacteriaceae
+2172	7	1	2.6483733912147787	genus	Methanobrevibacter
+83816	6	0	2.9956069978485034	species	Methanobrevibacter ruminantium
[phone]	2.9956069978485034	strain	Methanobrevibacter ruminantium M1
[phone]	4.701969383935966	no_rank	TACK group
[phone]	4.833030004650398	phylum	Thaumarchaeota
[phone]	4.833030004650398	order	Nitrosopumilales
[phone]	4.833030004650398	family	Nitrosopumilaceae
[phone]	4.833030004650398	genus	Nitrosopumilus
[phone]	4.833030004650398	species	Nitrosopumilus adriaticus
[phone]	3.7577410515006657	superkingdom	Eukaryota
[phone]	3.7577410515006657	no_rank	Opisthokonta
+4751	25	0	1.1301603777565976	kingdom	Fungi
[phone]	1.1301603777565976	subkingdom	Dikarya
+4890	25	0	1.1301603777565976	phylum	Ascomycota
[phone]	1.1301603777565976	no_rank	saccharomyceta
[phone]	1.1301603777565976	subphylum	Saccharomycotina
+4891	25	0	1.1301603777565976	class	Saccharomycetes
+4892	25	0	1.1301603777565976	order	Saccharomycetales
[phone]	1.3132361338061045	family	Phaffomycetaceae
[phone]	1.3132361338061045	genus	Komagataella
[phone]	1.3132361338061045	species	Komagataella phaffii
[phone]	1.3132361338061045	strain	Komagataella phaffii GS115
[phone]	1.008109873723593	no_rank	CUG-Ser1 clade
[phone]	1.008109873723593	family	Debaryomycetaceae
[phone]	1.008109873723593	no_rank	Candida/Lodderomyces clade
+5475	15	0	1.008109873723593	genus	Candida
[phone]	1.008109873723593	species	Candida dubliniensis
[phone]	1.008109873723593	strain	Candida dubliniensis CD36
[phone]	4.251647193181881	kingdom	Metazoa
[phone]	4.251647193181881	no_rank	Eumetazoa
[phone]	4.251647193181881	no_rank	Bilateria
[phone]	4.251647193181881	no_rank	Deuterostomia
[phone]	4.251647193181881	phylum	Chordata
[phone]	4.251647193181881	subphylum	Craniata
[phone]	4.251647193181881	no_rank	Vertebrata
[phone]	4.251647193181881	no_rank	Gnathostomata
[phone]	4.251647193181881	no_rank	Teleostomi
[phone]	4.251647193181881	no_rank	Euteleostomi
[phone]	4.251647193181881	superclass	Sarcopterygii
[phone]	4.251647193181881	no_rank	Dipnotetrapodomorpha
[phone]	4.251647193181881	no_rank	Tetrapoda
[phone]	4.251647193181881	no_rank	Amniota
[phone]	4.251647193181881	class	Mammalia
[phone]	4.251647193181881	no_rank	Theria
[phone]	4.251647193181881	no_rank	Eutheria
[phone]	4.251647193181881	no_rank	Boreoeutheria
[phone]	4.251647193181881	superorder	Euarchontoglires
[phone]	4.251647193181881	order	Primates
[phone]	4.251647193181881	suborder	Haplorrhini
[phone]	4.251647193181881	infraorder	Simiiformes
[phone]	4.251647193181881	parvorder	Catarrhini
[phone]	4.251647193181881	superfamily	Hominoidea
[phone]	4.251647193181881	family	Hominidae
[phone]	4.251647193181881	subfamily	Homininae
[phone]	4.251647193181881	genus	Homo
[phone]	4.251647193181881	species	Homo sapiens
[phone]	4.761562706518553	superkingdom	Viruses
[phone]	4.775296347886017	no_rank	Duplodnaviria
[phone]	4.775296347886017	kingdom	Heunggongvirae
[phone]	4.775296347886017	phylum	Uroviricota
[phone]	4.775296347886017	class	Caudoviricetes
[phone]	4.775296347886017	family	Siphoviridae
[phone]	4.775296347886017	no_rank	unclassified Siphoviridae
[phone]	4.775296347886017	species	Enterococcus phage vB_EfaS_IME197
[phone]	4.7390395346759115	no_rank	Varidnaviria
[phone]	4.7390395346759115	kingdom	Bamfordvirae
[phone]	4.7390395346759115	phylum	Nucleocytoviricota
[phone]	4.7390395346759115	class	Megaviricetes
[phone]	4.7390395346759115	order	Imitervirales
[phone]	4.7390395346759115	family	Mimiviridae
[phone]	4.7390395346759115	no_rank	unclassified Mimiviridae
[phone]	4.7390395346759115	species	Moumouvirus
[phone]	4.7390395346759115	no_rank	Acanthamoeba polyphaga moumouvirus