Mercurial > repos > iuc > tooldistillator
view test-data/fastp/fastp_report.json @ 4:ea93df4b3df2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 301f4d78613f8f6e120b5ed8b56bd5e084e99b13
author | iuc |
---|---|
date | Thu, 17 Oct 2024 08:00:15 +0000 |
parents | 6e868bf6c38e |
children |
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{ "summary": { "fastp_version": "0.23.2", "sequencing": "paired end (301 cycles + 301 cycles)", "before_filtering": { "total_reads":3489582, "total_bases":705053822, "q20_bases":672633294, "q30_bases":625189177, "q20_rate":0.954017, "q30_rate":0.886725, "read1_mean_length":201, "read2_mean_length":202, "gc_content":0.374995 }, "after_filtering": { "total_reads":3440258, "total_bases":690189367, "q20_bases":665469579, "q30_bases":620744461, "q20_rate":0.964184, "q30_rate":0.899383, "read1_mean_length":200, "read2_mean_length":200, "gc_content":0.374878 } }, "filtering_result": { "passed_filter_reads": 3440258, "corrected_reads": 464332, "corrected_bases": 996846, "low_quality_reads": 49324, "too_many_N_reads": 0, "too_short_reads": 0, "too_long_reads": 0 }, "duplication": { "rate": 0.0185954 }, "insert_size": { "peak": 147, "unknown": 18596, "histogram": 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}, "adapter_cutting": { "adapter_trimmed_reads": 75904, "adapter_trimmed_bases": 2561055, "read1_adapter_sequence": "unspecified", "read2_adapter_sequence": "unspecified", "read1_adapter_counts": {"C":292, "CTG":108, "CTT":147, "CTGG":56, "CTGTC":815, "CTGTCTC":118, "others":3652}, "read2_adapter_counts": {"C":2063, "CT":916, "CTG":1466, "CTGTC":2405, "CTGTCTC":1782, "CTGTCTCT":427, "others":28893} }, "read1_before_filtering": { "total_reads": 1744791, "total_bases": 351848724, "q20_bases": 342040599, "q30_bases": 323015923, "total_cycles": 301, "quality_curves": { 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"GACTC":95663, "GACTG":178587, "GACCA":252838, "GACCT":125319, "GACCC":79875, "GACCG":120739, "GACGA":213145, "GACGT":166862, "GACGC":91951, "GACGG":130862, "GAGAA":365221, "GAGAT":185605, "GAGAC":117909, "GAGAG":109063, "GAGTA":177705, "GAGTT":214340, "GAGTC":94066, "GAGTG":130088, "GAGCA":204467, "GAGCT":129708, "GAGCC":140801, "GAGCG":120593, "GAGGA":195891, "GAGGT":119163, "GAGGC":94726, "GAGGG":71161, "GTAAA":652762, "GTAAT":498879, "GTAAC":284920, "GTAAG":201040, "GTATA":261968, "GTATT":469091, "GTATC":278069, "GTATG":229228, "GTACA":208740, "GTACT":184567, "GTACC":168843, "GTACG":116575, "GTAGA":214188, "GTAGT":210766, "GTAGC":212170, "GTAGG":129286, "GTTAA":539812, "GTTAT":426954, "GTTAC":284255, "GTTAG":269525, "GTTTA":540753, "GTTTT":948126, "GTTTC":542638, "GTTTG":490824, "GTTCA":422159, "GTTCT":365900, "GTTCC":291315, "GTTCG":196805, "GTTGA":450682, "GTTGT":440795, "GTTGC":357924, "GTTGG":377641, "GTCAA":415080, "GTCAT":323097, "GTCAC":199159, "GTCAG":148794, 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"AGGTC":124610, "AGGTG":242863, "AGGCA":243059, "AGGCT":195458, "AGGCC":89108, "AGGCG":174959, "AGGGA":187933, "AGGGT":94121, "AGGGC":84088, "AGGGG":107899, "TAAAA":1452330, "TAAAT":960832, "TAAAC":544089, "TAAAG":701586, "TAATA":619962, "TAATT":1049662, "TAATC":508459, "TAATG":571451, "TAACA":491913, "TAACT":408878, "TAACC":275587, "TAACG":346279, "TAAGA":334541, "TAAGT":342236, "TAAGC":277541, "TAAGG":223116, "TATAA":491387, "TATAT":411540, "TATAC":287478, "TATAG":229017, "TATTA":627945, "TATTT":1165386, "TATTC":520137, "TATTG":574590, "TATCA":535772, "TATCT":463740, "TATCC":282258, "TATCG":273204, "TATGA":420498, "TATGT":291805, "TATGC":243104, "TATGG":292630, "TACAA":511155, "TACAT":310395, "TACAC":227860, "TACAG":271428, "TACTA":322276, "TACTT":553551, "TACTC":192999, "TACTG":266138, "TACCA":401150, "TACCT":244751, "TACCC":116425, "TACCG":156247, "TACGA":240762, "TACGT":249018, "TACGC":175937, "TACGG":148537, "TAGAA":530544, "TAGAT":321635, "TAGAC":175771, "TAGAG":170402, 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"TTGAT":894128, "TTGAC":412654, "TTGAG":264053, "TTGTA":511206, "TTGTT":1063548, "TTGTC":432371, "TTGTG":396142, "TTGCA":420303, "TTGCT":642726, "TTGCC":389194, "TTGCG":296480, "TTGGA":458436, "TTGGT":643693, "TTGGC":479460, "TTGGG":274638, "TCAAA":848949, "TCAAT":826933, "TCAAC":454982, "TCAAG":422964, "TCATA":424109, "TCATT":785355, "TCATC":473917, "TCATG":320502, "TCACA":268276, "TCACT":365648, "TCACC":249034, "TCACG":200222, "TCAGA":273515, "TCAGT":273243, "TCAGC":303071, "TCAGG":200449, "TCTAA":522998, "TCTAT":325263, "TCTAC":227247, "TCTAG":172398, "TCTTA":376816, "TCTTT":1183541, "TCTTC":692143, "TCTTG":468639, "TCTCA":213888, "TCTCT":337425, "TCTCC":202346, "TCTCG":132790, "TCTGA":293634, "TCTGT":389884, "TCTGC":299780, "TCTGG":283081, "TCCAA":466628, "TCCAT":409487, "TCCAC":231728, "TCCAG":245055, "TCCTA":243660, "TCCTT":507975, "TCCTC":220884, "TCCTG":256292, "TCCCA":252247, "TCCCT":212335, "TCCCC":151167, "TCCCG":109475, "TCCGA":155938, "TCCGT":225743, "TCCGC":177370, "TCCGG":62630, "TCGAA":254686, "TCGAT":288083, "TCGAC":157169, "TCGAG":95726, "TCGTA":243502, "TCGTT":518135, "TCGTC":220557, "TCGTG":219938, "TCGCA":197163, "TCGCT":308031, "TCGCC":206447, "TCGCG":89572, "TCGGA":156538, "TCGGT":198091, "TCGGC":165242, "TCGGG":90397, "TGAAA":997704, "TGAAT":649585, "TGAAC":416151, "TGAAG":576494, "TGATA":528238, "TGATT":869839, "TGATC":274623, "TGATG":498352, "TGACA":332425, "TGACT":320235, "TGACC":204886, "TGACG":234901, "TGAGA":197963, "TGAGT":197210, "TGAGC":169552, "TGAGG":129022, "TGTAA":459647, "TGTAT":395018, "TGTAC":212789, "TGTAG":233640, "TGTTA":493477, "TGTTT":936368, "TGTTC":465634, "TGTTG":597175, "TGTCA":338131, "TGTCT":313600, "TGTCC":213748, "TGTCG":242765, "TGTGA":261977, "TGTGT":248056, "TGTGC":193838, "TGTGG":234832, "TGCAA":419895, "TGCAT":306838, "TGCAC":186174, "TGCAG":253183, "TGCTA":344730, "TGCTT":599779, "TGCTC":210983, "TGCTG":398824, "TGCCA":404944, "TGCCT":254722, "TGCCC":140423, "TGCCG":204628, "TGCGA":193286, 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"CACCG":147919, "CACGA":216376, "CACGT":187338, "CACGC":122919, "CACGG":114205, "CAGAA":574375, "CAGAT":338156, "CAGAC":153335, "CAGAG":146823, "CAGTA":260403, "CAGTT":391063, "CAGTC":179365, "CAGTG":191091, "CAGCA":391061, "CAGCT":318825, "CAGCC":192254, "CAGCG":193504, "CAGGA":247245, "CAGGT":206291, "CAGGC":142594, "CAGGG":97849, "CTAAA":735213, "CTAAT":484000, "CTAAC":276742, "CTAAG":250291, "CTATA":236023, "CTATT":453027, "CTATC":240269, "CTATG":214905, "CTACA":236889, "CTACT":276874, "CTACC":156410, "CTACG":132148, "CTAGA":168501, "CTAGT":202642, "CTAGC":173183, "CTAGG":100356, "CTTAA":375430, "CTTAT":403968, "CTTAC":224643, "CTTAG":253397, "CTTTA":723849, "CTTTT":1340549, "CTTTC":552529, "CTTTG":516855, "CTTCA":589587, "CTTCT":760047, "CTTCC":296795, "CTTCG":232604, "CTTGA":426858, "CTTGT":464250, "CTTGC":283242, "CTTGG":319979, "CTCAA":273104, "CTCAT":233928, "CTCAC":116336, "CTCAG":110597, "CTCTA":183086, "CTCTT":441742, "CTCTC":137264, "CTCTG":159460, "CTCCA":176551, "CTCCT":248399, "CTCCC":90467, "CTCCG":79133, "CTCGA":97484, "CTCGT":182568, "CTCGC":88840, "CTCGG":67007, "CTGAA":450472, "CTGAT":344216, "CTGAC":170804, "CTGAG":107135, "CTGTA":274372, "CTGTT":548663, "CTGTC":236963, "CTGTG":173178, "CTGCA":256261, "CTGCT":378671, "CTGCC":188020, "CTGCG":131131, "CTGGA":242766, "CTGGT":321147, "CTGGC":205422, "CTGGG":129720, "CCAAA":583733, "CCAAT":587127, "CCAAC":378319, "CCAAG":316351, "CCATA":294165, "CCATT":608919, "CCATC":308516, "CCATG":224270, "CCACA":236490, "CCACT":240993, "CCACC":218159, "CCACG":151674, "CCAGA":279932, "CCAGT":248684, "CCAGC":254960, "CCAGG":107841, "CCTAA":332377, "CCTAT":191626, "CCTAC":138564, "CCTAG":100171, "CCTTA":238724, "CCTTT":577439, "CCTTC":324459, "CCTTG":263981, "CCTCA":137880, "CCTCT":197083, "CCTCC":130856, "CCTCG":75401, "CCTGA":203252, "CCTGT":238786, "CCTGC":170884, "CCTGG":110386, "CCCAA":278530, "CCCAT":234608, "CCCAC":131648, "CCCAG":129822, "CCCTA":118438, "CCCTT":223890, "CCCTC":86501, "CCCTG":105065, "CCCCA":161612, "CCCCT":122079, "CCCCC":90869, "CCCCG":56440, "CCCGA":90169, "CCCGT":103646, "CCCGC":95135, "CCCGG":26990, "CCGAA":206753, "CCGAT":205386, "CCGAC":147872, "CCGAG":62038, "CCGTA":149815, "CCGTT":318911, "CCGTC":137308, "CCGTG":116305, "CCGCA":178058, "CCGCT":215404, "CCGCC":157552, "CCGCG":65008, "CCGGA":61307, "CCGGT":69302, "CCGGC":63778, "CCGGG":26560, "CGAAA":403154, "CGAAT":327495, "CGAAC":197029, "CGAAG":225453, "CGATA":269684, "CGATT":483995, "CGATC":149599, "CGATG":233970, "CGACA":236370, "CGACT":187277, "CGACC":130867, "CGACG":119428, "CGAGA":122820, "CGAGT":110709, "CGAGC":108391, "CGAGG":71216, "CGTAA":307579, "CGTAT":249751, "CGTAC":120179, "CGTAG":127170, "CGTTA":347286, "CGTTT":591501, "CGTTC":280761, "CGTTG":354931, "CGTCA":219500, "CGTCT":168240, "CGTCC":132989, "CGTCG":105163, "CGTGA":198315, "CGTGT":172554, "CGTGC":126065, "CGTGG":152954, "CGCAA":295580, "CGCAT":205725, "CGCAC":110554, "CGCAG":128677, "CGCTA":217489, "CGCTT":358051, "CGCTC":125501, "CGCTG":214739, "CGCCA":304097, "CGCCT":180472, "CGCCC":100061, "CGCCG":129418, "CGCGA":87041, "CGCGT":88449, "CGCGC":66444, "CGCGG":65524, "CGGAA":248340, "CGGAT":182907, "CGGAC":99872, "CGGAG":76072, "CGGTA":155752, "CGGTT":237647, "CGGTC":111173, "CGGTG":148874, "CGGCA":181925, "CGGCT":175610, "CGGCC":84209, "CGGCG":125727, "CGGGA":106497, "CGGGT":81738, "CGGGC":65389, "CGGGG":54527, "GAAAA":1274453, "GAAAT":764460, "GAAAC":531972, "GAAAG":488898, "GAATA":501279, "GAATT":693390, "GAATC":384537, "GAATG":361919, "GAACA":453204, "GAACT":275043, "GAACC":253478, "GAACG":271243, "GAAGA":628139, "GAAGT":406022, "GAAGC":423340, "GAAGG":297809, "GATAA":615322, "GATAT":398859, "GATAC":275752, "GATAG":226885, "GATTA":499778, "GATTT":812884, "GATTC":386893, "GATTG":529792, "GATCA":272419, "GATCT":147734, "GATCC":158030, "GATCG":137674, "GATGA":458959, "GATGT":293624, "GATGC":262013, "GATGG":297353, "GACAA":417050, "GACAT":255204, "GACAC":180957, "GACAG":208921, "GACTA":209364, "GACTT":349439, "GACTC":98620, "GACTG":179347, "GACCA":248670, "GACCT":129673, "GACCC":80126, "GACCG":108878, "GACGA":228378, "GACGT":168590, "GACGC":110861, "GACGG":130453, "GAGAA":359629, "GAGAT":187151, "GAGAC":107873, "GAGAG":109087, "GAGTA":177828, "GAGTT":214514, "GAGTC":94811, "GAGTG":130683, "GAGCA":202315, "GAGCT":130661, "GAGCC":116113, "GAGCG":119099, "GAGGA":194973, "GAGGT":118965, "GAGGC":94435, "GAGGG":72332, "GTAAA":643439, "GTAAT":497407, "GTAAC":285245, "GTAAG":200035, "GTATA":267381, "GTATT":473833, "GTATC":280827, "GTATG":221813, "GTACA":212008, "GTACT":188355, "GTACC":170334, "GTACG":118269, "GTAGA":215520, "GTAGT":214729, "GTAGC":213470, "GTAGG":130383, "GTTAA":539772, "GTTAT":434935, "GTTAC":287539, "GTTAG":269211, "GTTTA":546385, "GTTTT":955048, "GTTTC":546098, "GTTTG":491865, "GTTCA":420595, "GTTCT":372753, "GTTCC":294721, "GTTCG":199468, "GTTGA":448193, "GTTGT":447180, "GTTGC":359554, "GTTGG":375096, "GTCAA":414892, "GTCAT":326378, "GTCAC":199850, "GTCAG":149345, "GTCTA":180593, "GTCTT":345285, "GTCTC":130966, "GTCTG":158622, "GTCCA":221871, "GTCCT":169883, "GTCCC":115318, "GTCCG":100058, "GTCGA":156788, "GTCGT":214158, "GTCGC":164642, "GTCGG":128779, "GTGAA":415066, "GTGAT":339804, "GTGAC":197001, "GTGAG":107497, "GTGTA":212240, "GTGTT":339619, "GTGTC":183809, "GTGTG":145041, "GTGCA":184066, "GTGCT":208350, "GTGCC":172302, "GTGCG":108414, "GTGGA":225123, "GTGGT":260299, "GTGGC":223542, "GTGGG":127102, "GCAAA":562353, "GCAAT":536120, "GCAAC":355357, "GCAAG":272844, "GCATA":237521, "GCATT":418759, "GCATC":262308, "GCATG":177044, "GCACA":193146, "GCACT":161725, "GCACC":186979, "GCACG":124128, "GCAGA":288484, "GCAGT":219678, "GCAGC":234598, "GCAGG":164276, "GCTAA":439124, "GCTAT":281649, "GCTAC":215269, "GCTAG":171248, "GCTTA":283494, "GCTTT":634126, "GCTTC":430736, "GCTTG":372656, "GCTCA":174048, "GCTCT":177941, "GCTCC":128382, "GCTCG":112803, "GCTGA":302529, "GCTGT":311589, "GCTGC":256587, "GCTGG":257275, "GCCAA":477671, "GCCAT":367968, 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"GACTC":93274, "GACTG":175123, "GACCA":249193, "GACCT":122896, "GACCC":78107, "GACCG":116490, "GACGA":209929, "GACGT":164232, "GACGC":90135, "GACGG":128727, "GAGAA":360467, "GAGAT":182841, "GAGAC":113552, "GAGAG":107528, "GAGTA":174867, "GAGTT":211402, "GAGTC":92286, "GAGTG":128302, "GAGCA":201475, "GAGCT":127175, "GAGCC":133971, "GAGCG":118807, "GAGGA":193261, "GAGGT":117193, "GAGGC":93165, "GAGGG":69955, "GTAAA":642696, "GTAAT":490362, "GTAAC":279817, "GTAAG":197719, "GTATA":257121, "GTATT":460791, "GTATC":273133, "GTATG":223707, "GTACA":205021, "GTACT":180619, "GTACC":165814, "GTACG":114472, "GTAGA":210654, "GTAGT":207271, "GTAGC":208679, "GTAGG":127058, "GTTAA":531550, "GTTAT":419951, "GTTAC":279148, "GTTAG":265455, "GTTTA":533292, "GTTTT":934989, "GTTTC":533932, "GTTTG":483393, "GTTCA":415980, "GTTCT":358917, "GTTCC":286745, "GTTCG":193138, "GTTGA":444602, "GTTGT":433695, "GTTGC":352224, "GTTGG":372393, "GTCAA":408809, "GTCAT":317619, "GTCAC":195660, "GTCAG":146491, 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"TCCGG":60060, "TCGAA":250615, "TCGAT":281995, "TCGAC":152303, "TCGAG":93832, "TCGTA":236505, "TCGTT":505438, "TCGTC":212378, "TCGTG":215513, "TCGCA":192633, "TCGCT":298449, "TCGCC":200393, "TCGCG":85967, "TCGGA":153709, "TCGGT":192660, "TCGGC":161710, "TCGGG":88265, "TGAAA":994091, "TGAAT":643203, "TGAAC":411371, "TGAAG":573923, "TGATA":521177, "TGATT":861973, "TGATC":267781, "TGATG":492653, "TGACA":326987, "TGACT":312208, "TGACC":201069, "TGACG":213537, "TGAGA":195987, "TGAGT":194244, "TGAGC":167453, "TGAGG":126883, "TGTAA":451853, "TGTAT":383492, "TGTAC":205622, "TGTAG":226923, "TGTTA":482600, "TGTTT":913079, "TGTTC":453177, "TGTTG":587907, "TGTCA":330391, "TGTCT":285395, "TGTCC":205041, "TGTCG":235154, "TGTGA":258345, "TGTGT":239941, "TGTGC":189666, "TGTGG":231211, "TGCAA":413769, "TGCAT":299259, "TGCAC":181145, "TGCAG":249146, "TGCTA":336923, "TGCTT":584942, "TGCTC":202904, "TGCTG":388792, "TGCCA":401069, "TGCCT":245029, "TGCCC":135416, "TGCCG":183431, "TGCGA":190851, 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"CACCG":144732, "CACGA":213134, "CACGT":182760, "CACGC":118363, "CACGG":112206, "CAGAA":570661, "CAGAT":334219, "CAGAC":149210, "CAGAG":144934, "CAGTA":255316, "CAGTT":386191, "CAGTC":174842, "CAGTG":188471, "CAGCA":386355, "CAGCT":312717, "CAGCC":188175, "CAGCG":191080, "CAGGA":245536, "CAGGT":203908, "CAGGC":140224, "CAGGG":96272, "CTAAA":727228, "CTAAT":472692, "CTAAC":267903, "CTAAG":246457, "CTATA":224894, "CTATT":434816, "CTATC":227765, "CTATG":208827, "CTACA":226746, "CTACT":262783, "CTACC":147496, "CTACG":126037, "CTAGA":164742, "CTAGT":197414, "CTAGC":168584, "CTAGG":97840, "CTTAA":363666, "CTTAT":368587, "CTTAC":200830, "CTTAG":248199, "CTTTA":704918, "CTTTT":1228513, "CTTTC":499565, "CTTTG":505844, "CTTCA":576859, "CTTCT":705864, "CTTCC":270696, "CTTCG":225484, "CTTGA":421258, "CTTGT":451145, "CTTGC":275010, "CTTGG":315573, "CTCAA":265676, "CTCAT":219440, "CTCAC":106617, "CTCAG":106642, "CTCTA":171796, "CTCTT":373676, "CTCTC":113428, "CTCTG":148156, "CTCCA":168002, "CTCCT":225875, "CTCCC":78704, "CTCCG":74360, "CTCGA":94291, "CTCGT":174264, "CTCGC":83715, "CTCGG":63404, "CTGAA":445810, "CTGAT":336624, "CTGAC":148061, "CTGAG":104791, "CTGTA":266905, "CTGTT":533287, "CTGTC":207974, "CTGTG":168104, "CTGCA":250104, "CTGCT":367311, "CTGCC":162481, "CTGCG":127354, "CTGGA":240233, "CTGGT":315797, "CTGGC":200015, "CTGGG":127502, "CCAAA":578137, "CCAAT":580349, "CCAAC":371398, "CCAAG":314281, "CCATA":288161, "CCATT":597756, "CCATC":297395, "CCATG":220558, "CCACA":230004, "CCACT":231746, "CCACC":210897, "CCACG":148525, "CCAGA":278130, "CCAGT":245584, "CCAGC":251448, "CCAGG":106223, "CCTAA":326738, "CCTAT":181616, "CCTAC":128800, "CCTAG":97418, "CCTTA":224914, "CCTTT":538818, "CCTTC":301623, "CCTTG":257882, "CCTCA":130230, "CCTCT":173338, "CCTCC":117826, "CCTCG":71419, "CCTGA":199120, "CCTGT":223611, "CCTGC":164248, "CCTGG":106945, "CCCAA":274151, "CCCAT":227354, "CCCAC":125101, "CCCAG":127991, "CCCTA":112865, "CCCTT":202658, "CCCTC":74941, "CCCTG":98455, "CCCCA":157025, "CCCCT":110316, "CCCCC":73205, "CCCCG":53536, "CCCGA":87969, "CCCGT":98893, "CCCGC":91655, "CCCGG":25205, "CCGAA":204104, "CCGAT":201869, "CCGAC":126771, "CCGAG":60780, "CCGTA":146209, "CCGTT":312710, "CCGTC":130435, "CCGTG":113664, "CCGCA":174879, "CCGCT":209146, "CCGCC":151745, "CCGCG":62464, "CCGGA":59404, "CCGGT":65943, "CCGGC":61125, "CCGGG":25050, "CGAAA":399276, "CGAAT":323545, "CGAAC":191487, "CGAAG":222841, "CGATA":265652, "CGATT":479082, "CGATC":134646, "CGATG":230204, "CGACA":232723, "CGACT":181579, "CGACC":124880, "CGACG":99401, "CGAGA":121376, "CGAGT":108395, "CGAGC":106086, "CGAGG":69687, "CGTAA":303295, "CGTAT":242798, "CGTAC":115209, "CGTAG":124289, "CGTTA":341521, "CGTTT":580221, "CGTTC":272864, "CGTTG":348826, "CGTCA":214578, "CGTCT":157371, "CGTCC":128138, "CGTCG":100439, "CGTGA":195903, "CGTGT":163591, "CGTGC":122627, "CGTGG":149962, "CGCAA":292003, "CGCAT":201001, "CGCAC":106837, "CGCAG":126036, "CGCTA":212622, "CGCTT":347045, "CGCTC":119650, "CGCTG":191868, "CGCCA":300906, "CGCCT":173907, "CGCCC":95760, "CGCCG":124198, "CGCGA":84936, "CGCGT":77431, "CGCGC":63346, "CGCGG":62646, "CGGAA":246317, "CGGAT":180388, "CGGAC":97184, "CGGAG":74079, "CGGTA":152449, "CGGTT":232869, "CGGTC":107274, "CGGTG":145325, "CGGCA":179552, "CGGCT":171496, "CGGCC":81149, "CGGCG":123224, "CGGGA":105114, "CGGGT":79442, "CGGGC":63617, "CGGGG":52556, "GAAAA":1269478, "GAAAT":760079, "GAAAC":527734, "GAAAG":486823, "GAATA":495592, "GAATT":688293, "GAATC":380038, "GAATG":358613, "GAACA":448052, "GAACT":268681, "GAACC":250193, "GAACG":268569, "GAAGA":625428, "GAAGT":403640, "GAAGC":420132, "GAAGG":295627, "GATAA":609901, "GATAT":392660, "GATAC":270985, "GATAG":224158, "GATTA":494573, "GATTT":806621, "GATTC":381619, "GATTG":527160, "GATCA":267573, "GATCT":130048, "GATCC":154142, "GATCG":134244, "GATGA":455280, "GATGT":288368, "GATGC":257257, "GATGG":294849, "GACAA":412214, "GACAT":250490, "GACAC":176845, "GACAG":206323, "GACTA":203968, "GACTT":343564, "GACTC":93159, "GACTG":175077, "GACCA":245669, "GACCT":123320, "GACCC":77284, "GACCG":107041, "GACGA":209085, "GACGT":164357, "GACGC":90173, "GACGG":128006, "GAGAA":357080, "GAGAT":184584, "GAGAC":105844, "GAGAG":106864, "GAGTA":174980, "GAGTT":212031, "GAGTC":92671, "GAGTG":128775, "GAGCA":200070, "GAGCT":127323, "GAGCC":114690, "GAGCG":117905, "GAGGA":192195, "GAGGT":116922, "GAGGC":92674, "GAGGG":69800, "GTAAA":637139, "GTAAT":490020, "GTAAC":279558, "GTAAG":196905, "GTATA":259328, "GTATT":464019, "GTATC":274028, "GTATG":217409, "GTACA":206154, "GTACT":181575, "GTACC":166140, "GTACG":115022, "GTAGA":210678, "GTAGT":210168, "GTAGC":209477, "GTAGG":127713, "GTTAA":532759, "GTTAT":425576, "GTTAC":280577, "GTTAG":265620, "GTTTA":537425, "GTTTT":937942, "GTTTC":534060, "GTTTG":484945, "GTTCA":414554, "GTTCT":360266, "GTTCC":288409, "GTTCG":194937, "GTTGA":443793, "GTTGT":437840, "GTTGC":352748, "GTTGG":371411, "GTCAA":410133, "GTCAT":319626, "GTCAC":194565, "GTCAG":146749, "GTCTA":173544, "GTCTT":331328, "GTCTC":107874, "GTCTG":152085, "GTCCA":218236, "GTCCT":163341, "GTCCC":109074, "GTCCG":97788, "GTCGA":152754, "GTCGT":208474, "GTCGC":158790, "GTCGG":126162, "GTGAA":412566, "GTGAT":336321, "GTGAC":194240, "GTGAG":105830, "GTGTA":204914, "GTGTT":332135, "GTGTC":178535, "GTGTG":141219, "GTGCA":180824, "GTGCT":203123, "GTGCC":169833, "GTGCG":106833, "GTGGA":222611, "GTGGT":256316, "GTGGC":220378, "GTGGG":124773, "GCAAA":557213, "GCAAT":531089, "GCAAC":350546, "GCAAG":270365, "GCATA":232649, "GCATT":411957, "GCATC":256817, "GCATG":173370, "GCACA":189030, "GCACT":156517, "GCACC":183598, "GCACG":121774, "GCAGA":285296, "GCAGT":216387, "GCAGC":231051, "GCAGG":162360, "GCTAA":433526, "GCTAT":274746, "GCTAC":209397, "GCTAG":168148, "GCTTA":275424, "GCTTT":620080, "GCTTC":421016, "GCTTG":366857, "GCTCA":169397, "GCTCT":168970, "GCTCC":122995, "GCTCG":109385, "GCTGA":297527, "GCTGT":299400, "GCTGC":233353, "GCTGG":252928, "GCCAA":474431, "GCCAT":363930, "GCCAC":219705, "GCCAG":198571, "GCCTA":158591, "GCCTT":316973, "GCCTC":95179, "GCCTG":141154, "GCCCA":163914, "GCCCT":83859, "GCCCC":91276, "GCCCG":64505, "GCCGA":162690, "GCCGT":176702, "GCCGC":159966, "GCCGG":61258, "GCGAA":269264, "GCGAT":262751, "GCGAC":156469, "GCGAG":81117, "GCGTA":159274, "GCGTT":289037, "GCGTC":91245, "GCGTG":119627, "GCGCA":169338, "GCGCT":162862, "GCGCC":153405, "GCGCG":63212, "GCGGA":169615, "GCGGT":174750, "GCGGC":159727, "GCGGG":91200, "GGAAA":572492, "GGAAT":411350, "GGAAC":282731, "GGAAG":262988, "GGATA":268641, "GGATT":429098, "GGATC":154559, "GGATG":202465, "GGACA":203164, "GGACT":146635, "GGACC":100589, "GGACG":125871, "GGAGA":175926, "GGAGT":118343, "GGAGC":121295, "GGAGG":112157, "GGTAA":346420, "GGTAT":231611, "GGTAC":164801, "GGTAG":147299, "GGTTA":269807, "GGTTT":463440, "GGTTC":253317, "GGTTG":272685, "GGTCA":201814, "GGTCT":130918, "GGTCC":101230, "GGTCG":125540, "GGTGA":241660, "GGTGT":231666, "GGTGC":183585, "GGTGG":211260, "GGCAA":380065, "GGCAT":253024, "GGCAC":167326, "GGCAG":159044, "GGCTA":213608, "GGCTT":360565, "GGCTC":117871, "GGCTG":187686, "GGCCA":155497, "GGCCT":88425, "GGCCC":58580, "GGCCG":81779, "GGCGA":199113, "GGCGT":188685, "GGCGC":152509, "GGCGG":151043, "GGGAA":269835, "GGGAT":217695, "GGGAC":106953, "GGGAG":73751, "GGGTA":107585, "GGGTT":169248, "GGGTC":77547, "GGGTG":90238, "GGGCA":134473, "GGGCT":112465, "GGGCC":58310, "GGGCG":93397, "GGGGA":135255, "GGGGT":85222, "GGGGC":89825, "GGGGG":54021 }, "overrepresented_sequences": { } }, "command": "fastp --thread 6 --report_title fastp_report --compression 4 --html ./report.html --json ./report.json -i /home/pierre/Seafile/ABROMICS_IFB/genome_test_CNR/fastq/10_Enterococcus_faecalis_S17_L001_R1_001.fastq.gz -I /home/pierre/Seafile/ABROMICS_IFB/genome_test_CNR/fastq/10_Enterococcus_faecalis_S17_L001_R2_001.fastq.gz --detect_adapter_for_pe -q 15 -c " }