Mercurial > repos > iuc > tooldistillator
view test-data/staramr/settings.txt @ 2:a7387ce2a8ca draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80
author | iuc |
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date | Wed, 03 Jul 2024 12:06:58 +0000 |
parents | 6e868bf6c38e |
children |
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command_line = /home/piemari/apps/conda/envs/amr/bin/staramr search --nprocs 4 --no-exclude-genes --pid-threshold 95 --percent-length-overlap-resfinder 90 --percent-length-overlap-pointfinder 90 --percent-length-overlap-plasmidfinder 90 --output-dir /storage/scratch/piemari/60579242/staramr/staramr_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579242/staramr/10_Enterococcus_faecalis_S17_L001.fasta version = 0.9.1 start_time = 2023-02-13 14:26:11 end_time = 2023-02-13 14:26:13 total_minutes = 0.04 resfinder_db_dir = /home/piemari/apps/conda/envs/amr/lib/python3.11/site-packages/staramr/databases/data/update/resfinder resfinder_db_url = https://bitbucket.org/genomicepidemiology/resfinder_db.git resfinder_db_commit = 23661dbb58797b302464855611223b7ba4a21f75 resfinder_db_date = Fri, 02 Dec 2022 11:36 pointfinder_db_dir = /home/piemari/apps/conda/envs/amr/lib/python3.11/site-packages/staramr/databases/data/update/pointfinder pointfinder_db_url = https://bitbucket.org/genomicepidemiology/pointfinder_db.git pointfinder_db_commit = a25ac32c7a7a904dff14ffbd17e3b3f7cd732954 pointfinder_db_date = Fri, 28 Oct 2022 10:19 pointfinder_organisms_all = campylobacter, enterococcus_faecalis, enterococcus_faecium, escherichia_coli, helicobacter_pylori, klebsiella, mycobacterium_tuberculosis, neisseria_gonorrhoeae, plasmodium_falciparum, salmonella, staphylococcus_aureus pointfinder_organisms_valid = campylobacter, enterococcus_faecalis, enterococcus_faecium, escherichia_coli, helicobacter_pylori, salmonella plasmidfinder_db_dir = /home/piemari/apps/conda/envs/amr/lib/python3.11/site-packages/staramr/databases/data/update/plasmidfinder plasmidfinder_db_url = https://bitbucket.org/genomicepidemiology/plasmidfinder_db.git plasmidfinder_db_commit = b1c9ddac0e618e07630a94452293d84f296a6de5 plasmidfinder_db_date = Thu, 12 Jan 2023 12:51 mlst_version = 2.23.0 pointfinder_organism = None pointfinder_gene_drug_version = 072621.1 resfinder_gene_drug_version = 072621