Mercurial > repos > iuc > tooldistillator_summarize

annotate test-data/integronfinder2/results.integrons @ 4:24eec94e6dfc draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 301f4d78613f8f6e120b5ed8b56bd5e084e99b13
author iuc
date Thu, 17 Oct 2024 08:00:41 +0000
parents 05c1bcba20c9
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05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
1 # cmd: integron_finder --cpu 4 --local-max --eagle-eyes --promoter-attI --pdf --gbk --keep-tmp --outdir /storage/scratch/piemari/60579123/integronfinder/integronfinder_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579123/integronfinder/10_Enterococcus_faecalis_S17_L001.fasta
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
3 integron_01 contig00017 contig00017_42 41235 41546 -1 NA protein protein NA CALIN No NA lin
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
4 integron_01 contig00017 contig00017_43 41543 42391 -1 NA protein protein NA CALIN No NA lin
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
5 integron_01 contig00017 attc_001 41600 41701 -1 0.15 attC attC attc_4 CALIN No NA lin
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
6 integron_01 contig00017 contig00017_44 42419 43705 -1 NA protein protein NA CALIN No NA lin
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
7 integron_01 contig00017 contig00017_45 43702 45213 -1 NA protein protein NA CALIN No NA lin
05c1bcba20c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 491c6fc94851aab68cb7529dd6b6fbc6caa84bf2
iuc
parents:
diff changeset
8 integron_01 contig00017 attc_002 44054 44100 -1 0.095 attC attC attc_4 CALIN No 2353.0 lin