Mercurial > repos > iuc > tooldistillator_summarize
view test-data/amrfinderplus/AMRFinderPlus_Point_mutation_report.tsv @ 4:24eec94e6dfc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 301f4d78613f8f6e120b5ed8b56bd5e084e99b13
| author | iuc |
|---|---|
| date | Thu, 17 Oct 2024 08:00:41 +0000 |
| parents | 6ff67d2860e1 |
| children |
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Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node NA contig_107_polypolish 5 861 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_107_polypolish 5 861 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_107_polypolish 5 861 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_107_polypolish 5 861 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_107_polypolish 5 861 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.82 869 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_107_polypolish 5 861 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 857 2912 29.36 81.95 870 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_10_polypolish 345 1334 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_10_polypolish 345 1334 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_10_polypolish 345 1334 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_10_polypolish 416 1334 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_10_polypolish 416 1334 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_10_polypolish 416 1334 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_11_polypolish 1319 2308 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_11_polypolish 1319 2308 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_11_polypolish 1319 2308 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_11_polypolish 1390 2308 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_11_polypolish 1390 2308 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_11_polypolish 1390 2308 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_12_polypolish 61 472 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.01 417 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_12_polypolish 61 472 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.30 418 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_12_polypolish 61 472 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.01 417 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_12_polypolish 61 472 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 412 2912 14.08 82.30 418 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_7_polypolish 39847 40836 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_7_polypolish 39847 40836 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_7_polypolish 39847 40836 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_7_polypolish 39918 40836 - 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_7_polypolish 39918 40836 - 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_7_polypolish 39918 40836 - 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_82_polypolish 31069 31987 + 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_82_polypolish 31069 31987 + 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_82_polypolish 31069 31987 + 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 919 2912 31.49 81.10 931 NC_022347.1:1040292-1037381 23S ribosomal RNA NA NA NA NA contig_82_polypolish 31069 32058 + 23S_A2074A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_82_polypolish 31069 32058 + 23S_A2075A Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA NA contig_82_polypolish 31069 32058 + 23S_C2627C Campylobacter 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE MACROLIDE POINTN 990 2912 33.93 80.56 1003 NC_002163.1:396449-399360 23S ribosomal RNA NA NA NA