view test-data/summarize/abricate_output.json @ 4:24eec94e6dfc draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 301f4d78613f8f6e120b5ed8b56bd5e084e99b13
author iuc
date Thu, 17 Oct 2024 08:00:41 +0000
parents 05c1bcba20c9
children
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[{"analysis_software_version": "1.0", "reference_database_version": "1.0", "analysis_software_name": "abricate", "results": [{"name": "abricate_report", "file_path": "tests/data/dummy/abricate/report.tsv", "hid": "12345", "galaxy_hid": "", "content": [{"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00002", "START": 142975, "END": 143985, "STRAND": "+", "GENE": "bopD", "COVERAGE": "1-1011/1011", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 98.91, "DATABASE": "vfdb", "ACCESSION": "NP_814691", "PRODUCT": "(bopD) sugar-binding transcriptional regulator LacI family [BopD (VF0362)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00003", "START": 7884, "END": 11111, "STRAND": "-", "GENE": "fss3", "COVERAGE": "1-3228/3228", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 99.38, "DATABASE": "vfdb", "ACCESSION": "NP_815578", "PRODUCT": "(fss3) Enterococcus faecalis surface protein Fss3 fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00003", "START": 162314, "END": 163240, "STRAND": "+", "GENE": "efaA", "COVERAGE": "1-927/927", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 99.89, "DATABASE": "vfdb", "ACCESSION": "NP_815739", "PRODUCT": "(efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00006", "START": 33703, "END": 37014, "STRAND": "+", "GENE": "ebpA", "COVERAGE": "1-3312/3312", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 99.49, "DATABASE": "vfdb", "ACCESSION": "NP_814821", "PRODUCT": "(ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00006", "START": 37018, "END": 38448, "STRAND": "+", "GENE": "ebpB", "COVERAGE": "1-1431/1431", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 99.3, "DATABASE": "vfdb", "ACCESSION": "NP_814822", "PRODUCT": "(ebpB) endocarditis and biofilm-associated pilus minor subunit EbpB [Ebp pili (VF0538)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00006", "START": 38445, "END": 40328, "STRAND": "+", "GENE": "ebpC", "COVERAGE": "1-1878/1878", "GAPS": "1/6", "%COVERAGE": 100.0, "%IDENTITY": 98.99, "DATABASE": "vfdb", "ACCESSION": "NP_814823", "PRODUCT": "(ebpC) endocarditis and biofilm-associated pilus major subunit EbpC [Ebp pili (VF0538)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00006", "START": 40422, "END": 41276, "STRAND": "+", "GENE": "srtC", "COVERAGE": "1-855/855", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 99.3, "DATABASE": "vfdb", "ACCESSION": "NP_814824", "PRODUCT": "(srtC) sortase [Ebp pili (VF0538)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00006", "START": 44356, "END": 46374, "STRAND": "+", "GENE": "ace", "COVERAGE": "1-2025/2025", "GAPS": "2/6", "%COVERAGE": 99.7, "%IDENTITY": 96.74, "DATABASE": "vfdb", "ACCESSION": "NP_814829", "PRODUCT": "(ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00010", "START": 49447, "END": 50301, 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"/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00023", "START": 14087, "END": 18004, "STRAND": "+", "GENE": "prgB/asc10", "COVERAGE": "1-3918/3918", "GAPS": "2/4", "%COVERAGE": 99.95, "%IDENTITY": 94.26, "DATABASE": "vfdb", "ACCESSION": "NP_817031", "PRODUCT": "(prgB/asc10) aggregation substance PrgB/Asc10 [AS (VF0352)] [Enterococcus faecalis V583]", "RESISTANCE": null}, {"FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00042", "START": 2539, "END": 8502, "STRAND": "-", "GENE": "fss1", "COVERAGE": "1-5964/5964", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 98.31, "DATABASE": "vfdb", "ACCESSION": "NP_813892", "PRODUCT": "(fss1) Enterococcus faecalis surface protein Fss1 fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]", "RESISTANCE": null}]}], "tool_has_database": true}]