Mercurial > repos > iuc > tooldistillator_summarize
view test-data/amrfinderplus/AMRFinderPlus_report.tsv @ 1:6ff67d2860e1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 30f10306f4283140f7e54cfe1b8bc1f76f4ef834
| author | iuc |
|---|---|
| date | Fri, 24 May 2024 10:47:00 +0000 |
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Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node NA contig_153_polypolish 4412 4645 - merE broad-spectrum mercury transporter MerE plus STRESS METAL MERCURY MERCURY BLASTX 78 78 100.00 96.15 78 AAC38236.1 broad-spectrum mercury transporter MerE NA NA merE NA contig_153_polypolish 7613 7846 - merT mercuric transport protein MerT plus STRESS METAL MERCURY MERCURY PARTIALX 78 116 67.24 92.31 78 CAA70196.1 mercuric transport protein MerT NA NA merT NA contig_160_polypolish 86415 86654 - fosA FosA5 family fosfomycin resistance glutathione transferase core AMR AMR FOSFOMYCIN FOSFOMYCIN PARTIALX 80 139 57.55 98.75 80 WP_114473955.1 fosfomycin resistance glutathione transferase FosA9 NA NA fosA5_fam NA contig_30_polypolish 3018 3344 + merR mercury resistance transcriptional regulator MerR plus STRESS METAL MERCURY MERCURY PARTIALX 109 144 75.69 93.58 109 BAA20334.1 mercury resistance transcriptional regulator MerR NA NA merR_Ps NA contig_30_polypolish 5821 6243 + catA1 type A-1 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL PARTIALX 141 219 64.38 98.58 141 WP_000412211.1 type A-1 chloramphenicol O-acetyltransferase NA NA catA1 NA contig_30_polypolish 5821 6243 + catA1 type A-1 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL PARTIALX 141 219 64.38 98.58 141 WP_063843217.1 type A-1 chloramphenicol O-acetyltransferase NA NA catA1 NA contig_30_polypolish 13708 14433 + blaCTX-M CTX-M family extended-spectrum class A beta-lactamase core AMR AMR BETA-LACTAM CEPHALOSPORIN INTERNAL_STOP 242 291 84.54 90.24 246 WP_063860025.1 extended-spectrum class A beta-lactamase CTX-M-179 NA NA blaCTX-M NA contig_30_polypolish 17856 18287 + merR mercury resistance transcriptional regulator MerR plus STRESS METAL MERCURY MERCURY BLASTX 144 144 100.00 92.36 144 CAA77320.1 mercury resistance transcriptional regulator MerR NA NA merR_Ps NA contig_30_polypolish 20698 21348 + catA1 type A-1 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL BLASTX 217 219 99.09 92.17 217 WP_000412211.1 type A-1 chloramphenicol O-acetyltransferase NA NA catA1 NA contig_35_polypolish 4787 5644 - aac(3)-IIe aminoglycoside N-acetyltransferase AAC(3)-IIe core AMR AMR AMINOGLYCOSIDE GENTAMICIN EXACTX 286 286 100.00 100.00 286 WP_000557452.1 aminoglycoside N-acetyltransferase AAC(3)-IIe NA NA aac(3)-IIe NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_002904004.1 extended-spectrum class A beta-lactamase SHV-12 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_004176269.1 broad-spectrum class A beta-lactamase SHV-11 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_004183952.1 broad-spectrum class A beta-lactamase SHV-60 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_032488413.1 extended-spectrum class A beta-lactamase SHV-2a NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_032494802.1 extended-spectrum class A beta-lactamase SHV-129 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864610.1 inhibitor-resistant broad-spectrum class A beta-lactamase SHV-107 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864613.1 class A beta-lactamase SHV-110 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864619.1 extended-spectrum class A beta-lactamase SHV-13 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864622.1 extended-spectrum class A beta-lactamase SHV-134 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864638.1 extended-spectrum class A beta-lactamase SHV-152 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864641.1 class A beta-lactamase SHV-155 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864645.1 class A beta-lactamase SHV-159 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864654.1 class A beta-lactamase SHV-172 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864656.1 class A beta-lactamase SHV-178 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864666.1 class A beta-lactamase SHV-190 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864674.1 extended-spectrum class A beta-lactamase SHV-31 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864681.1 broad-spectrum class A beta-lactamase SHV-40 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864693.1 inhibitor-resistant broad-spectrum class A beta-lactamase SHV-56 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864709.1 broad-spectrum class A beta-lactamase SHV-79 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_063864718.1 class A beta-lactamase SHV-96 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_096807447.1 class A beta-lactamase SHV-200 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_122630870.1 class A beta-lactamase SHV-215 NA NA blaSHV NA contig_36_polypolish 9168 9608 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 147 286 51.40 99.32 147 WP_122630880.1 class A beta-lactamase SHV-228 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_002904004.1 extended-spectrum class A beta-lactamase SHV-12 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_011117369.1 extended-spectrum class A beta-lactamase SHV-5 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_020316986.1 extended-spectrum class A beta-lactamase SHV-7 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864635.1 extended-spectrum class A beta-lactamase SHV-15 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864640.1 extended-spectrum class A beta-lactamase SHV-154 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864647.1 extended-spectrum class A beta-lactamase SHV-160 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864652.1 extended-spectrum class A beta-lactamase SHV-165 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864692.1 extended-spectrum class A beta-lactamase SHV-55 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864698.1 extended-spectrum class A beta-lactamase SHV-64 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_063864700.1 extended-spectrum class A beta-lactamase SHV-66 NA NA blaSHV NA contig_36_polypolish 9587 10024 + blaSHV SHV family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 146 286 51.05 95.89 146 WP_268871888.1 class A beta-lactamase SHV-230 NA NA blaSHV NA contig_37_polypolish 18 569 + aac(6')-Ib3 aminoglycoside N-acetyltransferase AAC(6')-Ib3 core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN ALLELEX 184 184 100.00 100.00 184 WP_032488579.1 aminoglycoside N-acetyltransferase AAC(6')-Ib3 NA NA aac(6')-Ib3 NA contig_37_polypolish 642 1424 + aadA1 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN BLASTX 261 262 100.00 97.71 262 WP_001206315.1 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 NA NA aadA1 NA contig_37_polypolish 3006 3863 + blaTEM-1 broad-spectrum class A beta-lactamase TEM-1 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 286 286 100.00 100.00 286 WP_000027057.1 broad-spectrum class A beta-lactamase TEM-1 NA NA blaTEM-1 NA contig_37_polypolish 8924 9133 - merC organomercurial transporter MerC plus STRESS METAL MERCURY ORGANOMERCURY PARTIALX 70 140 50.00 90.00 70 AAC33908.1 organomercurial transporter MerC NA NA merC NA contig_39_polypolish 3496 3825 - qacE quaternary ammonium compound efflux SMR transporter QacE core STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM EXACTX 110 110 100.00 100.00 110 WP_010890145.1 quaternary ammonium compound efflux SMR transporter QacE NA NA qacE NA contig_39_polypolish 4010 4327 - dfrA30 trimethoprim-resistant dihydrofolate reductase DfrA30 core AMR AMR TRIMETHOPRIM TRIMETHOPRIM PARTIALX 106 157 67.52 98.11 106 WP_063844408.1 trimethoprim-resistant dihydrofolate reductase DfrA30 NA NA dfrA30 NA contig_40_polypolish 632 1258 + aph(3')-Ia aminoglycoside O-phosphotransferase APH(3')-Ia core AMR AMR AMINOGLYCOSIDE KANAMYCIN PARTIALX 209 271 77.12 99.04 209 WP_000018329.1 aminoglycoside O-phosphotransferase APH(3')-Ia NA NA aph(3')-Ia NA contig_40_polypolish 632 1258 + aph(3')-Ia aminoglycoside O-phosphotransferase APH(3')-Ia core AMR AMR AMINOGLYCOSIDE KANAMYCIN PARTIALX 209 271 77.12 99.04 209 WP_063842148.1 aminoglycoside O-phosphotransferase APH(3')-Ia NA NA aph(3')-Ia NA contig_40_polypolish 2574 3359 + aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN BLASTX 262 267 98.13 100.00 262 WP_001082319.1 aminoglycoside O-phosphotransferase APH(3'')-Ib NA NA aph(3'')-Ib NA contig_40_polypolish 3555 4103 + aph(6)-Id aminoglycoside O-phosphotransferase APH(6)-Id core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN PARTIALX 183 278 65.83 98.91 183 WP_000480968.1 aminoglycoside O-phosphotransferase APH(6)-Id NA NA aph(6)-Id NA contig_40_polypolish 3555 4103 + aph(6)-Id aminoglycoside O-phosphotransferase APH(6)-Id core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN PARTIALX 183 278 65.83 98.91 183 WP_000480972.1 aminoglycoside O-phosphotransferase APH(6)-Id NA NA aph(6)-Id NA contig_40_polypolish 3555 4103 + aph(6)-Id aminoglycoside O-phosphotransferase APH(6)-Id core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN PARTIALX 183 278 65.83 98.91 183 WP_063842183.1 aminoglycoside O-phosphotransferase APH(6)-Id NA NA aph(6)-Id NA contig_41_polypolish 100023 100541 - terD tellurium resistance membrane protein TerD plus STRESS METAL TELLURIUM TELLURIUM BLASTX 173 192 90.10 98.84 173 AAA98292.1 tellurium resistance membrane protein TerD NA NA terD