view test-data/summarize/amrfinderplus_output.json @ 1:6ff67d2860e1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit 30f10306f4283140f7e54cfe1b8bc1f76f4ef834

[{"analysis_software_version": "3.11.26", "reference_database_version": "v3.11-2023-04-17.1", "analysis_software_name": "amrfinderplus", "results": [{"name": "amrfinderplus_report", "file_path": "tests/data/dummy/amrfinderplus/AMRFinderPlus_report.tsv", "hid": "12345", "galaxy_id": null, "content": [{"Protein identifier": null, "Contig id": "contig_153_polypolish", "Start": 4412, "Stop": 4645, "Strand": "-", "Gene symbol": "merE", "Sequence name": "broad-spectrum mercury transporter MerE", "Scope": "plus", "Element type": "STRESS", "Element subtype": "METAL", "Class": "MERCURY", "Subclass": "MERCURY", "Method": "BLASTX", "Target length": 78, "Reference sequence length": 78, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 96.15, "Alignment length": 78, "Accession of closest sequence": "AAC38236.1", "Name of closest sequence": "broad-spectrum mercury transporter MerE", "HMM id": null, "HMM description": null, "Hierarchy node": "merE"}, {"Protein identifier": null, "Contig id": "contig_153_polypolish", "Start": 7613, "Stop": 7846, "Strand": "-", "Gene symbol": "merT", "Sequence name": "mercuric transport protein MerT", "Scope": "plus", "Element type": "STRESS", "Element subtype": "METAL", "Class": "MERCURY", "Subclass": "MERCURY", "Method": "PARTIALX", "Target length": 78, "Reference sequence length": 116, "% Coverage of reference sequence": 67.24, "% Identity to reference sequence": 92.31, "Alignment length": 78, "Accession of closest sequence": "CAA70196.1", "Name of closest sequence": "mercuric transport protein MerT", "HMM id": null, "HMM description": null, "Hierarchy node": "merT"}, {"Protein identifier": null, "Contig id": "contig_160_polypolish", "Start": 86415, "Stop": 86654, "Strand": "-", "Gene symbol": "fosA", "Sequence name": "FosA5 family fosfomycin resistance glutathione transferase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "FOSFOMYCIN", "Subclass": "FOSFOMYCIN", "Method": "PARTIALX", "Target length": 80, "Reference sequence length": 139, "% Coverage of reference sequence": 57.55, "% Identity to reference sequence": 98.75, "Alignment length": 80, "Accession of closest sequence": "WP_114473955.1", "Name of closest sequence": "fosfomycin resistance glutathione transferase FosA9", "HMM id": null, "HMM description": null, "Hierarchy node": "fosA5_fam"}, {"Protein identifier": null, "Contig id": "contig_30_polypolish", "Start": 3018, "Stop": 3344, "Strand": "+", "Gene symbol": "merR", "Sequence name": "mercury resistance transcriptional regulator MerR", "Scope": "plus", "Element type": "STRESS", "Element subtype": "METAL", "Class": "MERCURY", "Subclass": "MERCURY", "Method": "PARTIALX", "Target length": 109, "Reference sequence length": 144, "% Coverage of reference sequence": 75.69, "% Identity to reference sequence": 93.58, "Alignment length": 109, "Accession of closest sequence": "BAA20334.1", "Name of closest sequence": "mercury resistance transcriptional regulator MerR", "HMM id": null, "HMM description": null, "Hierarchy node": "merR_Ps"}, {"Protein identifier": null, "Contig id": "contig_30_polypolish", "Start": 5821, "Stop": 6243, "Strand": "+", "Gene symbol": "catA1", "Sequence name": "type A-1 chloramphenicol O-acetyltransferase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "PHENICOL", "Subclass": "CHLORAMPHENICOL", "Method": "PARTIALX", "Target length": 141, "Reference sequence length": 219, "% Coverage of reference sequence": 64.38, "% Identity to reference sequence": 98.58, "Alignment length": 141, "Accession of closest sequence": "WP_000412211.1", "Name of closest sequence": "type A-1 chloramphenicol O-acetyltransferase", "HMM id": null, "HMM description": null, "Hierarchy node": "catA1"}, {"Protein identifier": null, "Contig id": "contig_30_polypolish", "Start": 5821, "Stop": 6243, "Strand": "+", "Gene symbol": "catA1", "Sequence name": "type A-1 chloramphenicol O-acetyltransferase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "PHENICOL", "Subclass": "CHLORAMPHENICOL", "Method": "PARTIALX", "Target length": 141, "Reference sequence length": 219, "% Coverage of reference sequence": 64.38, "% Identity to reference sequence": 98.58, "Alignment length": 141, "Accession of closest sequence": "WP_063843217.1", "Name of closest sequence": "type A-1 chloramphenicol O-acetyltransferase", "HMM id": null, "HMM description": null, "Hierarchy node": "catA1"}, {"Protein identifier": null, "Contig id": "contig_30_polypolish", "Start": 13708, "Stop": 14433, "Strand": "+", "Gene symbol": "blaCTX-M", "Sequence name": "CTX-M family extended-spectrum class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "CEPHALOSPORIN", "Method": "INTERNAL_STOP", "Target length": 242, "Reference sequence length": 291, "% Coverage of reference sequence": 84.54, "% Identity to reference sequence": 90.24, "Alignment length": 246, "Accession of closest sequence": "WP_063860025.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase CTX-M-179", "HMM id": null, "HMM description": null, "Hierarchy node": "blaCTX-M"}, {"Protein identifier": null, "Contig id": "contig_30_polypolish", "Start": 17856, "Stop": 18287, "Strand": "+", "Gene symbol": "merR", "Sequence name": "mercury resistance transcriptional regulator MerR", "Scope": "plus", "Element type": "STRESS", "Element subtype": "METAL", "Class": "MERCURY", "Subclass": "MERCURY", "Method": "BLASTX", "Target length": 144, "Reference sequence length": 144, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 92.36, "Alignment length": 144, "Accession of closest sequence": "CAA77320.1", "Name of closest sequence": "mercury resistance transcriptional regulator MerR", "HMM id": null, "HMM description": null, "Hierarchy node": "merR_Ps"}, {"Protein identifier": null, "Contig id": "contig_30_polypolish", "Start": 20698, "Stop": 21348, "Strand": "+", "Gene symbol": "catA1", "Sequence name": "type A-1 chloramphenicol O-acetyltransferase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "PHENICOL", "Subclass": "CHLORAMPHENICOL", "Method": "BLASTX", "Target length": 217, "Reference sequence length": 219, "% Coverage of reference sequence": 99.09, "% Identity to reference sequence": 92.17, "Alignment length": 217, "Accession of closest sequence": "WP_000412211.1", "Name of closest sequence": "type A-1 chloramphenicol O-acetyltransferase", "HMM id": null, "HMM description": null, "Hierarchy node": "catA1"}, {"Protein identifier": null, "Contig id": "contig_35_polypolish", "Start": 4787, "Stop": 5644, "Strand": "-", "Gene symbol": "aac(3)-IIe", "Sequence name": "aminoglycoside N-acetyltransferase AAC(3)-IIe", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "GENTAMICIN", "Method": "EXACTX", "Target length": 286, "Reference sequence length": 286, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 100.0, "Alignment length": 286, "Accession of closest sequence": "WP_000557452.1", "Name of closest sequence": "aminoglycoside N-acetyltransferase AAC(3)-IIe", "HMM id": null, "HMM description": null, "Hierarchy node": "aac(3)-IIe"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_002904004.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-12", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_004176269.1", "Name of closest sequence": "broad-spectrum class A beta-lactamase SHV-11", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_004183952.1", "Name of closest sequence": "broad-spectrum class A beta-lactamase SHV-60", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_032488413.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-2a", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_032494802.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-129", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864610.1", "Name of closest sequence": "inhibitor-resistant broad-spectrum class A beta-lactamase SHV-107", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864613.1", "Name of closest sequence": "class A beta-lactamase SHV-110", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864619.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-13", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864622.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-134", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864638.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-152", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864641.1", "Name of closest sequence": "class A beta-lactamase SHV-155", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864645.1", "Name of closest sequence": "class A beta-lactamase SHV-159", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864654.1", "Name of closest sequence": "class A beta-lactamase SHV-172", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864656.1", "Name of closest sequence": "class A beta-lactamase SHV-178", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864666.1", "Name of closest sequence": "class A beta-lactamase SHV-190", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864674.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-31", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864681.1", "Name of closest sequence": "broad-spectrum class A beta-lactamase SHV-40", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864693.1", "Name of closest sequence": "inhibitor-resistant broad-spectrum class A beta-lactamase SHV-56", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864709.1", "Name of closest sequence": "broad-spectrum class A beta-lactamase SHV-79", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_063864718.1", "Name of closest sequence": "class A beta-lactamase SHV-96", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_096807447.1", "Name of closest sequence": "class A beta-lactamase SHV-200", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_122630870.1", "Name of closest sequence": "class A beta-lactamase SHV-215", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9168, "Stop": 9608, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 147, "Reference sequence length": 286, "% Coverage of reference sequence": 51.4, "% Identity to reference sequence": 99.32, "Alignment length": 147, "Accession of closest sequence": "WP_122630880.1", "Name of closest sequence": "class A beta-lactamase SHV-228", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_002904004.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-12", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_011117369.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-5", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_020316986.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-7", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864635.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-15", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864640.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-154", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864647.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-160", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864652.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-165", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864692.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-55", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864698.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-64", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_063864700.1", "Name of closest sequence": "extended-spectrum class A beta-lactamase SHV-66", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_36_polypolish", "Start": 9587, "Stop": 10024, "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "PARTIALX", "Target length": 146, "Reference sequence length": 286, "% Coverage of reference sequence": 51.05, "% Identity to reference sequence": 95.89, "Alignment length": 146, "Accession of closest sequence": "WP_268871888.1", "Name of closest sequence": "class A beta-lactamase SHV-230", "HMM id": null, "HMM description": null, "Hierarchy node": "blaSHV"}, {"Protein identifier": null, "Contig id": "contig_37_polypolish", "Start": 18, "Stop": 569, "Strand": "+", "Gene symbol": "aac(6')-Ib3", "Sequence name": "aminoglycoside N-acetyltransferase AAC(6')-Ib3", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "AMIKACIN/KANAMYCIN/TOBRAMYCIN", "Method": "ALLELEX", "Target length": 184, "Reference sequence length": 184, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 100.0, "Alignment length": 184, "Accession of closest sequence": "WP_032488579.1", "Name of closest sequence": "aminoglycoside N-acetyltransferase AAC(6')-Ib3", "HMM id": null, "HMM description": null, "Hierarchy node": "aac(6')-Ib3"}, {"Protein identifier": null, "Contig id": "contig_37_polypolish", "Start": 642, "Stop": 1424, "Strand": "+", "Gene symbol": "aadA1", "Sequence name": "ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "STREPTOMYCIN", "Method": "BLASTX", "Target length": 261, "Reference sequence length": 262, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 97.71, "Alignment length": 262, "Accession of closest sequence": "WP_001206315.1", "Name of closest sequence": "ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1", "HMM id": null, "HMM description": null, "Hierarchy node": "aadA1"}, {"Protein identifier": null, "Contig id": "contig_37_polypolish", "Start": 3006, "Stop": 3863, "Strand": "+", "Gene symbol": "blaTEM-1", "Sequence name": "broad-spectrum class A beta-lactamase TEM-1", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "BETA-LACTAM", "Subclass": "BETA-LACTAM", "Method": "ALLELEX", "Target length": 286, "Reference sequence length": 286, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 100.0, "Alignment length": 286, "Accession of closest sequence": "WP_000027057.1", "Name of closest sequence": "broad-spectrum class A beta-lactamase TEM-1", "HMM id": null, "HMM description": null, "Hierarchy node": "blaTEM-1"}, {"Protein identifier": null, "Contig id": "contig_37_polypolish", "Start": 8924, "Stop": 9133, "Strand": "-", "Gene symbol": "merC", "Sequence name": "organomercurial transporter MerC", "Scope": "plus", "Element type": "STRESS", "Element subtype": "METAL", "Class": "MERCURY", "Subclass": "ORGANOMERCURY", "Method": "PARTIALX", "Target length": 70, "Reference sequence length": 140, "% Coverage of reference sequence": 50.0, "% Identity to reference sequence": 90.0, "Alignment length": 70, "Accession of closest sequence": "AAC33908.1", "Name of closest sequence": "organomercurial transporter MerC", "HMM id": null, "HMM description": null, "Hierarchy node": "merC"}, {"Protein identifier": null, "Contig id": "contig_39_polypolish", "Start": 3496, "Stop": 3825, "Strand": "-", "Gene symbol": "qacE", "Sequence name": "quaternary ammonium compound efflux SMR transporter QacE", "Scope": "core", "Element type": "STRESS", "Element subtype": "BIOCIDE", "Class": "QUATERNARY AMMONIUM", "Subclass": "QUATERNARY AMMONIUM", "Method": "EXACTX", "Target length": 110, "Reference sequence length": 110, "% Coverage of reference sequence": 100.0, "% Identity to reference sequence": 100.0, "Alignment length": 110, "Accession of closest sequence": "WP_010890145.1", "Name of closest sequence": "quaternary ammonium compound efflux SMR transporter QacE", "HMM id": null, "HMM description": null, "Hierarchy node": "qacE"}, {"Protein identifier": null, "Contig id": "contig_39_polypolish", "Start": 4010, "Stop": 4327, "Strand": "-", "Gene symbol": "dfrA30", "Sequence name": "trimethoprim-resistant dihydrofolate reductase DfrA30", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "TRIMETHOPRIM", "Subclass": "TRIMETHOPRIM", "Method": "PARTIALX", "Target length": 106, "Reference sequence length": 157, "% Coverage of reference sequence": 67.52, "% Identity to reference sequence": 98.11, "Alignment length": 106, "Accession of closest sequence": "WP_063844408.1", "Name of closest sequence": "trimethoprim-resistant dihydrofolate reductase DfrA30", "HMM id": null, "HMM description": null, "Hierarchy node": "dfrA30"}, {"Protein identifier": null, "Contig id": "contig_40_polypolish", "Start": 632, "Stop": 1258, "Strand": "+", "Gene symbol": "aph(3')-Ia", "Sequence name": "aminoglycoside O-phosphotransferase APH(3')-Ia", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "KANAMYCIN", "Method": "PARTIALX", "Target length": 209, "Reference sequence length": 271, "% Coverage of reference sequence": 77.12, "% Identity to reference sequence": 99.04, "Alignment length": 209, "Accession of closest sequence": "WP_000018329.1", "Name of closest sequence": "aminoglycoside O-phosphotransferase APH(3')-Ia", "HMM id": null, "HMM description": null, "Hierarchy node": "aph(3')-Ia"}, {"Protein identifier": null, "Contig id": "contig_40_polypolish", "Start": 632, "Stop": 1258, "Strand": "+", "Gene symbol": "aph(3')-Ia", "Sequence name": "aminoglycoside O-phosphotransferase APH(3')-Ia", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "KANAMYCIN", "Method": "PARTIALX", "Target length": 209, "Reference sequence length": 271, "% Coverage of reference sequence": 77.12, "% Identity to reference sequence": 99.04, "Alignment length": 209, "Accession of closest sequence": "WP_063842148.1", "Name of closest sequence": "aminoglycoside O-phosphotransferase APH(3')-Ia", "HMM id": null, "HMM description": null, "Hierarchy node": "aph(3')-Ia"}, {"Protein identifier": null, "Contig id": "contig_40_polypolish", "Start": 2574, "Stop": 3359, "Strand": "+", "Gene symbol": "aph(3'')-Ib", "Sequence name": "aminoglycoside O-phosphotransferase APH(3'')-Ib", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "STREPTOMYCIN", "Method": "BLASTX", "Target length": 262, "Reference sequence length": 267, "% Coverage of reference sequence": 98.13, "% Identity to reference sequence": 100.0, "Alignment length": 262, "Accession of closest sequence": "WP_001082319.1", "Name of closest sequence": "aminoglycoside O-phosphotransferase APH(3'')-Ib", "HMM id": null, "HMM description": null, "Hierarchy node": "aph(3'')-Ib"}, {"Protein identifier": null, "Contig id": "contig_40_polypolish", "Start": 3555, "Stop": 4103, "Strand": "+", "Gene symbol": "aph(6)-Id", "Sequence name": "aminoglycoside O-phosphotransferase APH(6)-Id", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "STREPTOMYCIN", "Method": "PARTIALX", "Target length": 183, "Reference sequence length": 278, "% Coverage of reference sequence": 65.83, "% Identity to reference sequence": 98.91, "Alignment length": 183, "Accession of closest sequence": "WP_000480968.1", "Name of closest sequence": "aminoglycoside O-phosphotransferase APH(6)-Id", "HMM id": null, "HMM description": null, "Hierarchy node": "aph(6)-Id"}, {"Protein identifier": null, "Contig id": "contig_40_polypolish", "Start": 3555, "Stop": 4103, "Strand": "+", "Gene symbol": "aph(6)-Id", "Sequence name": "aminoglycoside O-phosphotransferase APH(6)-Id", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "STREPTOMYCIN", "Method": "PARTIALX", "Target length": 183, "Reference sequence length": 278, "% Coverage of reference sequence": 65.83, "% Identity to reference sequence": 98.91, "Alignment length": 183, "Accession of closest sequence": "WP_000480972.1", "Name of closest sequence": "aminoglycoside O-phosphotransferase APH(6)-Id", "HMM id": null, "HMM description": null, "Hierarchy node": "aph(6)-Id"}, {"Protein identifier": null, "Contig id": "contig_40_polypolish", "Start": 3555, "Stop": 4103, "Strand": "+", "Gene symbol": "aph(6)-Id", "Sequence name": "aminoglycoside O-phosphotransferase APH(6)-Id", "Scope": "core", "Element type": "AMR", "Element subtype": "AMR", "Class": "AMINOGLYCOSIDE", "Subclass": "STREPTOMYCIN", "Method": "PARTIALX", "Target length": 183, "Reference sequence length": 278, "% Coverage of reference sequence": 65.83, "% Identity to reference sequence": 98.91, "Alignment length": 183, "Accession of closest sequence": "WP_063842183.1", "Name of closest sequence": "aminoglycoside O-phosphotransferase APH(6)-Id", "HMM id": null, "HMM description": null, "Hierarchy node": "aph(6)-Id"}, {"Protein identifier": null, "Contig id": "contig_41_polypolish", "Start": 100023, "Stop": 100541, "Strand": "-", "Gene symbol": "terD", "Sequence name": "tellurium resistance membrane protein TerD", "Scope": "plus", "Element type": "STRESS", "Element subtype": "METAL", "Class": "TELLURIUM", "Subclass": "TELLURIUM", "Method": "BLASTX", "Target length": 173, "Reference sequence length": 192, "% Coverage of reference sequence": 90.1, "% Identity to reference sequence": 98.84, "Alignment length": 173, "Accession of closest sequence": "AAA98292.1", "Name of closest sequence": "tellurium resistance membrane protein TerD", "HMM id": null, "HMM description": null, "Hierarchy node": "terD"}]}, {"name": "point_mutation_report", "file_path": "tests/data/dummy/amrfinderplus/AMRFinderPlus_Point_mutation_report.tsv", "hid": "12345", "galaxy_id": null, "content": [{"Protein identifier": null, "Contig id": "contig_107_polypolish", "Start": 5, "Stop": 861, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 857, "Reference sequence length": 2912, "% Coverage of reference sequence": 29.36, "% Identity to reference sequence": 81.82, "Alignment length": 869, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_107_polypolish", "Start": 5, "Stop": 861, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 857, "Reference sequence length": 2912, "% Coverage of reference sequence": 29.36, "% Identity to reference sequence": 81.95, "Alignment length": 870, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_107_polypolish", "Start": 5, "Stop": 861, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 857, "Reference sequence length": 2912, "% Coverage of reference sequence": 29.36, "% Identity to reference sequence": 81.82, "Alignment length": 869, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_107_polypolish", "Start": 5, "Stop": 861, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 857, "Reference sequence length": 2912, "% Coverage of reference sequence": 29.36, "% Identity to reference sequence": 81.95, "Alignment length": 870, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_107_polypolish", "Start": 5, "Stop": 861, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 857, "Reference sequence length": 2912, "% Coverage of reference sequence": 29.36, "% Identity to reference sequence": 81.82, "Alignment length": 869, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_107_polypolish", "Start": 5, "Stop": 861, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 857, "Reference sequence length": 2912, "% Coverage of reference sequence": 29.36, "% Identity to reference sequence": 81.95, "Alignment length": 870, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_10_polypolish", "Start": 345, "Stop": 1334, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_10_polypolish", "Start": 345, "Stop": 1334, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_10_polypolish", "Start": 345, "Stop": 1334, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_10_polypolish", "Start": 416, "Stop": 1334, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_10_polypolish", "Start": 416, "Stop": 1334, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_10_polypolish", "Start": 416, "Stop": 1334, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_11_polypolish", "Start": 1319, "Stop": 2308, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_11_polypolish", "Start": 1319, "Stop": 2308, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_11_polypolish", "Start": 1319, "Stop": 2308, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_11_polypolish", "Start": 1390, "Stop": 2308, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_11_polypolish", "Start": 1390, "Stop": 2308, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_11_polypolish", "Start": 1390, "Stop": 2308, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_12_polypolish", "Start": 61, "Stop": 472, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 412, "Reference sequence length": 2912, "% Coverage of reference sequence": 14.08, "% Identity to reference sequence": 82.01, "Alignment length": 417, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_12_polypolish", "Start": 61, "Stop": 472, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 412, "Reference sequence length": 2912, "% Coverage of reference sequence": 14.08, "% Identity to reference sequence": 82.3, "Alignment length": 418, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_12_polypolish", "Start": 61, "Stop": 472, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 412, "Reference sequence length": 2912, "% Coverage of reference sequence": 14.08, "% Identity to reference sequence": 82.01, "Alignment length": 417, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_12_polypolish", "Start": 61, "Stop": 472, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 412, "Reference sequence length": 2912, "% Coverage of reference sequence": 14.08, "% Identity to reference sequence": 82.3, "Alignment length": 418, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_7_polypolish", "Start": 39847, "Stop": 40836, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_7_polypolish", "Start": 39847, "Stop": 40836, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_7_polypolish", "Start": 39847, "Stop": 40836, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_7_polypolish", "Start": 39918, "Stop": 40836, "Strand": "-", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_7_polypolish", "Start": 39918, "Stop": 40836, "Strand": "-", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_7_polypolish", "Start": 39918, "Stop": 40836, "Strand": "-", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_82_polypolish", "Start": 31069, "Stop": 31987, "Strand": "+", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_82_polypolish", "Start": 31069, "Stop": 31987, "Strand": "+", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_82_polypolish", "Start": 31069, "Stop": 31987, "Strand": "+", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 919, "Reference sequence length": 2912, "% Coverage of reference sequence": 31.49, "% Identity to reference sequence": 81.1, "Alignment length": 931, "Accession of closest sequence": "NC_022347.1:1040292-1037381", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_82_polypolish", "Start": 31069, "Stop": 32058, "Strand": "+", "Gene symbol": "23S_A2074A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_82_polypolish", "Start": 31069, "Stop": 32058, "Strand": "+", "Gene symbol": "23S_A2075A", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}, {"Protein identifier": null, "Contig id": "contig_82_polypolish", "Start": 31069, "Stop": 32058, "Strand": "+", "Gene symbol": "23S_C2627C", "Sequence name": "Campylobacter 23S ribosomal RNA [WILDTYPE]", "Scope": "core", "Element type": "AMR", "Element subtype": "POINT", "Class": "MACROLIDE", "Subclass": "MACROLIDE", "Method": "POINTN", "Target length": 990, "Reference sequence length": 2912, "% Coverage of reference sequence": 33.93, "% Identity to reference sequence": 80.56, "Alignment length": 1003, "Accession of closest sequence": "NC_002163.1:396449-399360", "Name of closest sequence": "23S ribosomal RNA", "HMM id": null, "HMM description": null, "Hierarchy node": null}]}, {"name": "nucleotide_sequence", "file_path": "tests/data/dummy/amrfinderplus/AMRFinderPlus_Nucleotide_identified_sequences.fasta", "hid": "12345", "galaxy_id": null, "content": [{"Name": "contig_153_polypolish:4412-4645", "Contig id": "contig_153_polypolish", "Start": "4412", "Stop": "4645", "Strand": "-", "Gene symbol": "merE", "Sequence name": "broad-spectrum mercury transporter MerE", "Length": 234, "Sequence": "ATGAACAGCCCAGAGCACTTGCCGTCTGAGACGCACAAACCGATCACCGGCTACTTGTGGGGCGCGCTGGCCGTGCTCACCTGTCCCTGCCATTTGCCGATTCTCGCCATTGTGCTAGCCGGCACGACGGCCGGCGCGTTCATCGGGGAGCACTGGGGTATTGCAGCCCTCACGCTGACCGGCTTGTTTGTCCTGTCTGTGACGCGGCTGCTGCGGGCCTTCAAGGGAAGATCA"}, {"Name": "contig_153_polypolish:7613-7846", "Contig id": "contig_153_polypolish", "Start": "7613", "Stop": "7846", "Strand": "-", "Gene symbol": "merT", "Sequence name": "mercuric transport protein MerT", "Length": 234, "Sequence": "TCTGAACCACAAAACGGGCGCGGCGCGTTCTTCGCCGGTGGGCTGGCCGCCATTCTTGCGTCGGCCTGCTGCCCGGGGCCGCTGGTTTTGATCGCCTTGGGGTTCAGCGGGGCATGGATCGGCAACCTGACGGTGCTGGAACCCTATCGCCCGATCTTCATCGGCGCAGCGCTGGTCGCGCTGCTTTTCGCCCGGCGGCGCATCTACCGCCCGGCGCAAGCCTGCCAAACCGGG"}, {"Name": "contig_160_polypolish:86415-86654", "Contig id": "contig_160_polypolish", "Start": "86415", "Stop": "86654", "Strand": "-", "Gene symbol": "fosA", "Sequence name": "FosA5 family fosfomycin resistance glutathione transferase", "Length": 240, "Sequence": "GCAGTCAGCCAGCTGGCGCCGAGCGTGGCGTTTTATCAGCAGCTGTTGGGCATGACGCTGCACGCCCGCTGGGACAGCGGCGCCTATCTCTCCTGCGGCGATTTGTGGCTGTGCCTGTCGCTGGATCCGCAGCGGCGCATCACCCCGCCGGAGGAGAGCGACTACACCCATTATGCGTTTAGCATTAGCGAGGCGGATTTCGCTAGCTTCGCCGCCCGCCTTGAGGTTGCCGGCGTCAGC"}, {"Name": "contig_30_polypolish:13708-14433", "Contig id": "contig_30_polypolish", "Start": "13708", "Stop": "14433", "Strand": "+", "Gene symbol": "blaCTX-M", "Sequence name": "CTX-M family extended-spectrum class A beta-lactamase", "Length": 726, "Sequence": "AAACTTGCCGAATTAGAGCGGCAGTCGGGAGGCAGACTGGGTGTGGCATTGATTAACACAGCAGATAATTCGCAAATACTTTATCGTGCTGATGAGCGCTTTGCGATGTGCAGCACCAGTAAAGTGATGGCCGCGGCCGCGGTGCTGAAGAAAAGTGAAAGCGAACCGAATCTGTTAAATCAGCGAGTTGAGATCAAAAAATCTGACCTTGTTAACTATAATCCGATTGCGGAAAAGCACGTCAATGGGACGATGTCACTGGCTGAGCTTAGCGCGGCCGCGCTACAGTACAGCGATAACGTGGCGATGAATAAGCTGATTGCTCACGTTGGCGGCCCGGCTAGCGTCACCGCGTTCGCCCGACAGCTGGGAGACGAAACGTTCCGTCTCGACCGTACCGAGCCGACGTTAAACACCGCCATTCCGGGCGATCCGCGTGATACCACTTCACCTCGGGCAATGGCGCAAACTCTGCGGAATCTGACGCTGGGTAAAGCATTGGGCGACAGCCAACGGGCGCAGCTGGTGACATGGATGAAAGGCAATACCACCGGTGCAGCGAGCATTCAGGCTGGACTGCCTGCTTCCCGGGTTGTGGGGGATAAAACCGGCAGCGGTGGCTATGGCACCACCAACGATATCGCGGTGATCTGGCCAAAGATCGTGCGCCGCTGATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCGCG"}, {"Name": "contig_30_polypolish:17856-18287", "Contig id": "contig_30_polypolish", "Start": "17856", "Stop": "18287", "Strand": "+", "Gene symbol": "merR", "Sequence name": "mercury resistance transcriptional regulator MerR", "Length": 432, "Sequence": "ATGGAAAATAATTTGGAAAACCTGACCATTGGCGTTTTTGCCAAGGCGGCCGGGGTCAACGTGGAGACAATCCGCTTCTATCAGCGCAAGGGCCTGTTGCGGGAACCGGACAAGCCTTACGGCAGCATCCGCCGCTATGGGGAGGCGGACGTGGTTCGGGTGAAATTCGTGAAATCGGCACAGCGGCTGGGGTTCAGTCTGGACGAGATTGCCGAGCTGTTGCGGCTCGACGATGGCACCCACTGCGAGGAGGCCAGCAGCCCGGCCGAACACAAGCTCAAGGACGTGCGCGAGAAGATGGCCGACTTGGCGCGCATGGAAACCGTGCTGTCTGAACTCGTGTGCGCCTGCCATGCACGCAAGGGGAATGTTTCCTGCCCGTTGATCGCGTCACTACAGGGCGAAGCAGGCCCGGCAAGGTCAGCTATGCCT"}, {"Name": "contig_30_polypolish:20698-21348", "Contig id": "contig_30_polypolish", "Start": "20698", "Stop": "21348", "Strand": "+", "Gene symbol": "catA1", "Sequence name": "type A-1 chloramphenicol O-acetyltransferase", "Length": 651, "Sequence": "GAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCACGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTTTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCG"}, {"Name": "contig_30_polypolish:3018-3344", "Contig id": "contig_30_polypolish", "Start": "3018", "Stop": "3344", "Strand": "+", "Gene symbol": "merR", "Sequence name": "mercury resistance transcriptional regulator MerR", "Length": 327, "Sequence": "TTTGCCAAGGCGGCCGGGGTCAACGTGGAGACAATCCGCTTCTATCAGCGCAAGGGCCTGTTGCGGGAACCGGACAAGCCTTACGGCGGCATCCGCCGCTATGGGGAGGCGGACGTGGTTCGGGTGAAATTCGTGAAATCGGCACAGCGGCTGGGGTTCAGTCTGGACGAGATTGCCGAGCTGTTGCGGCTCGACGATGGCACCCACTGCGAGGAGGCCAGCAGCTTGGCCGAACACAAGCTCAAGGACGTGCGCGAGAAGATGGCCGACTTGGCGCGCATGGAAACCGTGCTGTCTGAACTCGTGTGCGCCTGCCATGCACGAAGG"}, {"Name": "contig_30_polypolish:5821-6243", "Contig id": "contig_30_polypolish", "Start": "5821", "Stop": "6243", "Strand": "+", "Gene symbol": "catA1", "Sequence name": "type A-1 chloramphenicol O-acetyltransferase", "Length": 423, "Sequence": "GAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACACGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTT"}, {"Name": "contig_35_polypolish:4787-5644", "Contig id": "contig_35_polypolish", "Start": "4787", "Stop": "5644", "Strand": "-", "Gene symbol": "aac(3)-IIe", "Sequence name": "aminoglycoside N-acetyltransferase AAC(3)-IIe", "Length": 858, "Sequence": "ATGCATACGCGGAAGGCAATAACGGAGGCAATTCGAAAATTAGGAGTCCAAACCGGTGACCTGTTGATGGTGCATGCCTCACTTAAAGCGATTGGTCCGGTCGAAGGAGGAGCGGAGACGGTCGTTGCCGCGTTACGCTCCGCGGTTGGGCCGACTGGCACTGTGATGGGATACGCGTCGTGGGACCGATCACCCTACGAGGAGACTCTGAATGGCGCTCGGTTGGATGACAAAGCCCGCCGTACCTGGCCGCCGTTCGATCCCGCAACGGCCGGGACTTACCGTGGGTTCGGCCTGCTGAATCAATTTCTGGTTCAAGCCCCCGGCGCGCGGCGCAGCGCGCACCCCGATGCATCGATGGTCGCGGTTGGTCCGCTAGCTGAAACGCTGACGGAGCCTCACGAACTCGGTCACGCCTTGGGGGAAGGGTCGCCCGTCGAGCGGTTCGTCCGCCTTGGCGGGAAGGCCCTGCTGTTGGGTGCGCCGCTAAACTCCGTTACCGCATTGCACTACGCCGAGGCGGTTGCGGATATCCCCAACAAACGATGGGTGACGTATGAGATGCCGATGCTTGGAAGAAACGGTGAAGTCGCCTGGAAAACGGCATCAGAATACGATTCAAACGGCATTCTCGATTGCTTTGCTATCGAAGGAAAGCCGGATGCGGTCGAAACTATAGCAAATGCTTACGTGAAGCTCGGTCGCCATCGAGAAGGTGTCGTGGGCTTTGCTCAGTGCTACCTGTTCGACGCGCAGGACATCGTGACGTTCGGCGTCACCTATCTTGAGAAGCACTTCGGAGCCACTCCGATCGTGCCAGCACACGAAGCCGCCCAGCGCTCTTGCGAGCCTTCCGGT"}, {"Name": "contig_36_polypolish:9168-9608", "Contig id": "contig_36_polypolish", "Start": "9168", "Stop": "9608", "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Length": 441, "Sequence": "ATGCGTTATATTCGCCTGTGTATTATCTCCCTGTTAGCCACCCTGCCGCTGGCGGTACACGCCAGCCCGCAGCCGCTTGAGCAAATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTAGGCATGATAGAAATGGATCTGGCCAGCGGCCGCACGCTGACCGCCCGGCGCGCCGATGAACGCTTTCCCATGATGAGCACCTTTAAAGTAGTGCTCTGCGGCGCAGTGCTGGCGCGGGTGGATGCCGGTGACGAACAGCTGGAGCGAAAGATCCACTATCGCCAGCAGGATCTGGTGGACTACTCGCCGGTCAGCGAAAAACACCTTGCCGACGGCATGACGGTCGGCGAACTCTGCGCCGCCGCCATTACCATGAGCGATAACAGCGCCGCCAATCTGCTGCTGGCCACCGTCGGCGGCCCCGCAGGATTGACTGCCTTT"}, {"Name": "contig_36_polypolish:9587-10024", "Contig id": "contig_36_polypolish", "Start": "9587", "Stop": "10024", "Strand": "+", "Gene symbol": "blaSHV", "Sequence name": "SHV family class A beta-lactamase", "Length": 438, "Sequence": "CCCCGCAGGATTGACTGCCTTTTGCGCCAGATCGGCGACAACGTCACCCGCCTTGACCGCTGGGAAACGGAACTGAATGAGGCGCTTCCCGGCGACGCCCGCGACACCACTACCCCGGCCAGCATGGCCGCGACCCTGCGCAAGCTGCTGACCAGCCAGCGTCTGAGCGCCCGTTCGCAACGGCAGCTGCTGCAGTGGATGGTGGACGATCGGGTCGCCGGACCGTTGATCCGCTCCGTGCTGCCGGCGGGCTGGTTTATCGCCGATAAGACCGGAGCTAGCAAGCGGGGTGCGCGCGGGATTGTCGCCCTGCTTGGCCCGAATAACAAAGCAGAGCGCATTGTGGTGATTTATCTGCGGGATACGCCGGCGAGCATGGCCGAGCGAAATCAGCAAATCGCCGGGATCGGCGCGGCGCTGATCGAGCACTGGCAACGC"}, {"Name": "contig_37_polypolish:18-569", "Contig id": "contig_37_polypolish", "Start": "18", "Stop": "569", "Strand": "+", "Gene symbol": "aac(6')-Ib3", "Sequence name": "aminoglycoside N-acetyltransferase AAC(6')-Ib3", "Length": 552, "Sequence": "GTGACCAACAGCAACGATTCCGTCACACTGCGCCTCATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGATCTCATATCGTCGAGTGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCGATTGGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACCGATCCAGGAGTACGCGGAATAGACCAGTTACTGGCGAATGCATCACAACTGGGCAAAGGCTTGGGAACCAAGCTGGTTCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACCAAGATCCAAACGGACCCGTCGCCGAGCAACTTGCGAGCGATCCGATGCTACGAGAAAGCGGGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCCGTGTACATGGTTCAAACACGCCAGGCATTCGAGCGAACACGCAGTGATGCC"}, {"Name": "contig_37_polypolish:3006-3863", "Contig id": "contig_37_polypolish", "Start": "3006", "Stop": "3863", "Strand": "+", "Gene symbol": "blaTEM-1", "Sequence name": "broad-spectrum class A beta-lactamase TEM-1", "Length": 858, "Sequence": "ATGAGTATTCAACATTTTCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGTGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCTGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGCAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGG"}, {"Name": "contig_37_polypolish:642-1424", "Contig id": "contig_37_polypolish", "Start": "642", "Stop": "1424", "Strand": "+", "Gene symbol": "aadA1", "Sequence name": "ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1", "Length": 783, "Sequence": "ATGAGGGAAGCGGTGATCGCCGAAGTATCGACTCAACTATCAGAGGTAGTTGGCGTCATCGAGCGCCATCTCGAACCGACGTTGCTGGCCGTACATTTGTACGGCTCCGCAGTGGATGGCGGCCTGAAGCCACACAGTGATATTGATTTGCTGGTTACGGTGACCGTAAGGCTTGATGAAACAACGCGGCGAGCTTTGATCAACGACCTTTGGAAACTTCGGCTTCCCGGAGAGAGCGAGATTCTCCGCGCTGTAGAAGTCACCATTGTTGTGCACGACGACATCATTCCGTGGCGTTATCCAGCTAAGCGCGAACTGCAATTTGGAGAATGGCAGCGCAATGACATTCTTGCAGGTATCTTCGAGCCAGCCACGATCGACATTGATCTGGCTATCTTGCTGACAAAAGCAAGAGAACATAGCGTTGCCTTGGTAGGTCCAGCGGCGGAGGAACTCTTTGATCCGGTTCCTGAACAGGATCTATTTGAGGCGCTAAATGAAACCTTAACGCTATGGAACTCGCCGCCCGACTGGGCTGGCGATGAGCGAAATGTAGTGCTTACGTTGTCCCGCATTTGGTACAGCGCAGTAACCGGCAAAATCGCGCCGAAGGATGTCGCTGCCGACTGGGCAATGGAGCGCCTGCCGGCCCAGTATCAGCCCGTCATACTTGAAGCTAGGCAGGCTTATCTTGGACAAGAAGATCGCTTGGCCTCGCGCGCAGATCAGTTGGAAGAATTTGTTCACTACGTGAAAGGCGAGATCACCAAGGTAGTCGGCAAA"}, {"Name": "contig_37_polypolish:8924-9133", "Contig id": "contig_37_polypolish", "Start": "8924", "Stop": "9133", "Strand": "-", "Gene symbol": "merC", "Sequence name": "organomercurial transporter MerC", "Length": 210, "Sequence": "CTTGAGCCAGTACGAGGACTGTTCATCAGCCGCCTGCTGCCGCTGTTTGCCGCGCTGGCCTTCTCGGCGAACGCGCTGGGTTGGTTCAGTCATCGGCAATGGCTGCGCAGTCTGCTCGGCATGATCGGCCCGGCCATCGTGTTTGCGGCCACGGTCTGGCTGCTCGGCAACTGGTGGACGGCGAACCTGATGTACGTCGGCACCGGCCTT"}, {"Name": "contig_39_polypolish:3496-3825", "Contig id": "contig_39_polypolish", "Start": "3496", "Stop": "3825", "Strand": "-", "Gene symbol": "qacE", "Sequence name": "quaternary ammonium compound efflux SMR transporter QacE", "Length": 330, "Sequence": "ATGAAAGGCTGGCTTTTTCTTGTTATCGCAATAGTTGGCGAAGTAATCGCAACATCCGCATTAAAATCTAGCGAGGGCTTTACTAAGCTTGCCCCTTCCGCCGTTGTCATAATCGGTTATGGCATCGCATTTTATTTTCTTTCTCTGGTTCTGAAATCCATCCCTGTCGGTGTTGCTTATGCAGTCTGGTCGGGACTCGGCGTCGTCATAATTACAGCCATTGCCTGGTTGCTTCATGGGCAAAAGCTTGATGCGTGGGGCTTTGTAGGTATGGGGCTCATAGTTAGTGGTGTAGTAGTTTTAAACTTGCTTTCCAAAGCAAGTGCCCAC"}, {"Name": "contig_39_polypolish:4010-4327", "Contig id": "contig_39_polypolish", "Start": "4010", "Stop": "4327", "Strand": "-", "Gene symbol": "dfrA30", "Sequence name": "trimethoprim-resistant dihydrofolate reductase DfrA30", "Length": 318, "Sequence": "GGGGCGCTCCCCAATAGGAAATACGCGGTCGTTACTCGCTCAGCTCGGACGGCCAATAATGACAACGTAGTAGTATTCCCGTCGATCGAAGAGGCCATGGGCGGTCTAGCTAAACTCACCGGTCACGTTATAGTGTCTGGTGGCGGGGAGATTTACAGAGAAACGTTGCCCATGGCCTCTACGCTCCATGTATCGACGATCGACATTGAGCCAGAAGGGGATGTTTTCTTCCCGAATATTCCCAACTTCTTCGAAGTTGTTTTTGAGCAACATTTTAGTTCAAACATTAACTATTGCTATCAAATTTGGAAAAAGGGT"}, {"Name": "contig_40_polypolish:2574-3359", "Contig id": "contig_40_polypolish", "Start": "2574", "Stop": "3359", "Strand": "+", "Gene symbol": "aph(3'')-Ib", "Sequence name": "aminoglycoside O-phosphotransferase APH(3'')-Ib", "Length": 786, "Sequence": "ATATTTTTTGGTGAATCGCATTCTGACTGGTTGCCTGTCAGAGGCGGAGAATCTGGTGATTTTGTTTTTCGACGTGGTGACGGGCATGCCTTCGCGAAAATCGCACCTGCTTCCCGCCGCGGTGAGCTCGCTGGAGAGCGTGACCGCCTCATTTGGCTCAAAGGTCGAGGTGTGGCTTGCCCCGAGGTGATCAACTGGCAGGAGGAACAGGAGGGTGCATGCTTGGTGATAACGGCAATTCCGGGAGTACCGGCGGCTGATCTGTCTGGAGCGGATTTGCTCAAAGCGTGGCCGTCAATGGGGCAGCAACTTGGCGCTGTTCACAGCCTATCGGTTGATCAATGTCCGTTTGAGCGCAGGCTGTCGCGAATGTTCGGACGCGCCGTTGATGTGGTGTCCCGCAATGCCGTCAATCCCGACTTCTTACCGGACGAGGACAAGAGTACGCCGCAGCTCGATCTTTTGGCTCGTGTCGAACGAGAGCTACCGGTGCGGCTCGACCAAGAGCGCACCGATATGGTTGTTTGCCATGGTGATCCCTGCATGCCGAACTTCATGGTGGACCCTAAAACTCTTCAATGCACGGGTCTGATCGACCTTGGGCGGCTCGGAACAGCAGATCGCTATGCCGATTTGGCACTCATGATTGCTAACGCCGAAGAGAACTGGGCAGCGCCAGATGAAGCAGAGCGCGCCTTCGCTGTCCTATTCAATGTATTGGGGATCGAAGCCCCCGACCGCGAACGCCTTGCCTTCTATCTGCGATTGGACCCTCTGACTTGGGGT"}, {"Name": "contig_40_polypolish:3555-4103", "Contig id": "contig_40_polypolish", "Start": "3555", "Stop": "4103", "Strand": "+", "Gene symbol": "aph(6)-Id", "Sequence name": "aminoglycoside O-phosphotransferase APH(6)-Id", "Length": 549, "Sequence": "GGAGCAGTCCGGTTGCTCGGTCGTGAGAACAATCTGATGTTGCTCGAATATGCCGGGGAGCGAATGCTCTCTCACATCGTTGCCGAGCACGGCGACTACCGAGCGACCGAAATTGCAGCGGAACTAATGGCGAAGCTGTATGCCGCATCTGAGGAACCCCTGCCTTCTGCCCTTCTCCCGATCCGGGATCGCTTTGCAGCTTTGTTTCAGCGGGCGCGCGATGATCAAAACGCAGGTTGTCAAACTGACTACGTCCACGCGGCGATTATAGCCGATCAAATGATGAGCAATGCCTCGGAACTGCGTGGGCTACATGGCGATCTGCATCATGAAAACATCATGTTCTCCAGTCGCGGCTGGCTGGTGATAGATCCCGTCGGTCTGGTCGGTGAAGTGGGCTTTGGCGCCGCCAATATGTTCTACGATCCGGCTGACAGAGACGACCTTTGTCTCGATCCTAGACGCATTGCACAGATGGCGGACGCATTCTCTCGTGCGCTGGACGTCGATCCGCGTCGCCTGCTCGACCGTGCGTACGCTTATGGGTGC"}, {"Name": "contig_40_polypolish:632-1258", "Contig id": "contig_40_polypolish", "Start": "632", "Stop": "1258", "Strand": "+", "Gene symbol": "aph(3')-Ia", "Sequence name": "aminoglycoside O-phosphotransferase APH(3')-Ia", "Length": 627, "Sequence": "ATGAGCCATATTCAACGGGAAACGTCTTGCTCGAGGCCGCGATTAAATTCCAACATGGATGCTGATTTATATGGGTATAAATGGGCTCGCGATAATGTCGGGCAATCAGGTGCGACAATCTATCGATTGTATGGGAAGCCCGATGCGCCAGAGTTGTTTCTGAAACATGGCAAAGGTAGCGTTGCCAATGATGTTACAGATGAGATGGTCAGACTAAACTGGCTGACGGAATTTATGCCTCTTCCGACCATCAAGCATTTTATCCGTACTCCTGATGATGCATGGTTACTCACCACTGCGATCCCCGGGAAAACAGCATTCCGGGTATTAGAAGAATATCCTGATTCAGGTGAAAATATTGTTGATGCGCTGGCAGTGTTCCTGCGCCGGTTGCATTCGATTCCTGTTTGTAATTGTCCTTTTAACAACGATCGCGTATTTCGTCTCGCTCAGGCGCAATCACGAATGAATAACGGTTTGGTTGATGCGAGTGATTTTGATGACGAGCGTAATGGCTGGCCTGTTGAACAAGTCTGGAAAGAAATGCATAAGCTTTTGCCATTCTCACCGGATTCAGTCGTCACTCATGGTGATTTCTCACTTGATAACCTTATTTTTGACGAGGGA"}, {"Name": "contig_41_polypolish:100023-100541", "Contig id": "contig_41_polypolish", "Start": "100023", "Stop": "100541", "Strand": "-", "Gene symbol": "terD", "Sequence name": "tellurium resistance membrane protein TerD", "Length": 519, "Sequence": "ATGAGCGTTTCACTATCTAAAGGCGGCAACGTTTCCCTGAGCAAAACCGCGCCAAGCATGAAAAACGTGCTGGTTGGCCTTGGCTGGGATGCACGTTCTACGGACGGTCAGGACTTTGACCTCGATGCTTCCGCATTTCTGCTGGCAGCCAATGGCAAGGTTCGTGGCGATGCAGATTTCATTTTCTATAACAACCTGAAATCTGCTGATGGTTCCGTTACTCATACCGGTGATAACCGTACCGGTGAAGGTGATGGCGACGATGAATCCCTCAAAATCAAACTGGACGCGGTACACGGGGATGTCGACAAAATTATTTTCGTTGTCACTATCCATGATGCTCAGGCTCGTCGCCAGAGCTTCGGTCAGGTTTCCGGCGCATTTATCCGTCTGGTGAATGATGACAATCAGACTGAAGTTGCTCGCTACGATCTGACAGAAGACGCTTCTACTGAAACTGCCATGCTGTTTGGGGAGCTGTATCGTCACAACGGAGAATGGAAATTCCGTGCGGTTGGC"}]}], "tool_has_database": true}]