Mercurial > repos > iuc > tooldistillator_summarize
view test-data/sylph/report.tsv @ 7:7fe1fe92de41 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit b14e0602e63d833befda354faa901e4b3e8d06fe
| author | iuc |
|---|---|
| date | Tue, 15 Jul 2025 09:51:56 +0000 |
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Sample_file Genome_file Taxonomic_abundance Sequence_abundance Adjusted_ANI Eff_cov ANI_5-95_percentile Eff_lambda Lambda_5-95_percentile Median_cov Mean_cov_geq1 Containment_ind Naive_ANI kmers_reassigned Contig_name ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/012/825/GCF_000012825.1_genomic.fna.gz 26.4968 33.4884 99.41 30.000 NA-NA HIGH NA-NA 30 30.351 17565/21133 99.41 129 NC_009614.1 Phocaeicola vulgatus ATCC 8482, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/154/465/GCF_000154465.1_genomic.fna.gz 7.3681 4.6004 99.11 8.342 NA-NA HIGH NA-NA 8 8.342 8119/10726 99.11 87 NZ_DS499581.1 Alistipes putredinis DSM 17216 Scfld_02_11, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/900/537/995/GCF_900537995.1_genomic.fna.gz 5.5969 6.1560 98.81 6.337 NA-NA HIGH NA-NA 6 6.337 12742/18464 98.81 198 NZ_LR027880.1 Roseburia intestinalis L1-82 chromosome 1, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/374/365/GCF_000374365.1_genomic.fna.gz 4.0816 4.9132 96.79 4.621 NA-NA HIGH NA-NA 4 4.621 7651/21050 96.79 1107 NZ_KB894115.1 Bacteroides gallinarum DSM 18171 = JCM 13658 strain DSM 18171 C233DRAFT_scaffold00001.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/020/687/245/GCF_020687245.1_genomic.fna.gz 3.0661 2.2233 98.19 3.471 NA-NA HIGH NA-NA 3 3.471 7262/12801 98.19 922 NZ_JAJEQG010000010.1 Faecalibacterium longum CLA-AA-H243 NODE_10_length_77401_cov_21.251280, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/567/015/GCF_025567015.1_genomic.fna.gz 2.9192 2.9281 98.11 3.305 NA-NA HIGH NA-NA 3 3.305 9681/17507 98.11 819 NZ_JAOQJO010000001.1 Brotolimicola acetigignens strain f_CXY .18048_1_81.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/147/485/GCF_025147485.1_genomic.fna.gz 2.8845 3.2688 98.68 3.266 NA-NA HIGH NA-NA 3 3.266 12953/19545 98.68 674 NZ_CP102263.1 Bacteroides uniformis strain ATCC 8492 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/948/436/425/GCA_948436425.1_genomic.fna.gz 2.8309 3.1487 97.67 3.205 NA-NA HIGH NA-NA 3 3.205 9456/19608 97.67 1600 CAOJIG010000001.1 MAG TPA_asm: uncultured Bacteroides sp. isolate SRR17684645_bin.52_metawrap_v1.3_MAG genome assembly, contig: NODE.237_length_112368_cov_16_422275, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/900/540/205/GCA_900540205.1_genomic.fna.gz 2.8098 1.9072 96.62 3.181 NA-NA HIGH NA-NA 3 3.181 4131/11993 96.62 15 UQER01000001.1 uncultured Porphyromonadaceae bacterium isolate UMGS216 genome assembly, contig: NODE_18_length_181316_cov_6.673752, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/210/075/GCF_000210075.1_genomic.fna.gz 2.8097 4.1102 95.60 3.181 NA-NA HIGH NA-NA 3 3.181 6293/25349 95.60 7063 NC_021017.1 Bacteroides xylanisolvens XB1A, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/324/185/GCF_003324185.1_genomic.fna.gz 2.8013 2.0785 96.56 3.172 NA-NA HIGH NA-NA 3 3.172 4427/13101 96.56 2239 NZ_PXUP01000075.1 Faecalibacterium prausnitzii strain ATCC 27768 NODE_100_length_572_cov_365.695, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/958/432/865/GCA_958432865.1_genomic.fna.gz 2.5449 1.8538 97.14 2.881 NA-NA HIGH NA-NA 3 2.881 5262/12942 97.14 3812 CAUAWO010000001.1 MAG TPA_asm: Bacteroides stercoris isolate SRR17798025_bin.17_MetaWRAP_v1.3_MAG genome assembly, contig: ERZ18697963.49, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/002/222/615/GCF_002222615.2_genomic.fna.gz 2.0130 2.2523 99.11 2.279 99.07-99.15 2.279 2.16-2.36 2 2.713 13365/19603 98.77 19 NZ_CP022412.2 Bacteroides caccae strain ATCC 43185 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/147/325/GCF_025147325.1_genomic.fna.gz 1.7076 1.6753 97.38 1.933 97.17-97.45 1.933 1.84-2.36 2 2.796 6377/16879 96.91 4496 NZ_CP102262.1 Bacteroides stercoris ATCC 43183 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/434/995/GCA_000434995.1_genomic.fna.gz 1.6879 0.7177 98.98 1.911 98.85-99.07 1.911 1.79-2.17 2 2.611 4586/7385 98.47 0 FR895287.1 Firmicutes bacterium CAG:341 genomic scaffold, scf3, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/001/406/815/GCF_001406815.1_genomic.fna.gz 1.5558 1.2700 98.46 1.761 98.40-98.52 1.761 1.67-1.86 2 2.491 7346/14285 97.88 348 NZ_CVRR01000001.1 Roseburia faecis strain M72, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/020/605/GCF_000020605.1_genomic.fna.gz 1.4175 1.1970 97.99 1.605 97.90-98.08 1.605 1.51-1.69 2 2.237 5973/14021 97.28 307 NC_012781.1 Agathobacter rectalis ATCC 33656, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/011/065/GCF_000011065.1_genomic.fna.gz 1.3166 2.0283 98.40 1.491 98.34-98.46 1.491 1.44-1.54 2 2.051 12610/26733 97.61 773 NC_004663.1 Bacteroides thetaiotaomicron VPI-5482, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/012/845/GCF_000012845.1_genomic.fna.gz 1.2919 1.5215 99.25 1.463 99.19-99.30 1.463 1.41-1.52 2 2.036 12557/20586 98.42 126 NC_009615.1 Parabacteroides distasonis ATCC 8503, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/010/509/575/GCF_010509575.1_genomic.fna.gz 1.1909 0.9044 97.83 1.348 97.71-97.97 1.348 1.24-1.44 2 2.242 4866/12970 96.89 1208 NZ_CP048437.1 Faecalibacterium duncaniae strain JCM 31915 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/023/347/255/GCF_023347255.1_genomic.fna.gz 1.1060 0.8445 98.34 1.252 98.24-98.44 1.252 1.19-1.32 2 2.335 5523/12942 97.29 894 NZ_CP094466.1 Faecalibacterium sp. I4-3-84 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/902/463/235/GCA_902463235.1_genomic.fna.gz 1.0907 0.4205 95.61 1.235 95.39-95.81 1.235 1.09-1.41 2 2.469 1197/6777 94.56 1554 CABQER010000001.1 MAG TPA_asm: uncultured Faecalibacterium sp. isolate MGYG-HGUT-00512 genome assembly, contig: GUT_GENOME014039_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/205/025/GCF_000205025.1_genomic.fna.gz 1.0830 0.7507 98.38 1.226 98.29-98.52 1.226 1.14-1.28 1 1.771 5156/12065 97.29 10 NZ_GL883674.1 Parasutterella excrementihominis YIT 11859 Scfld0, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/028/539/415/GCF_028539415.1_genomic.fna.gz 0.9730 1.6144 98.98 1.102 98.92-99.04 1.102 1.07-1.13 1 1.776 14258/29270 97.71 62 NZ_JANSWE010000001.1 Bacteroides cellulosilyticus DSM 14838 contig_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/002/549/775/GCF_002549775.1_genomic.fna.gz 0.8953 0.6186 98.87 1.014 98.76-99.01 1.014 0.94-1.06 2 2.371 5465/12104 97.47 7 NZ_NMTR01000002.1 Faecalibacterium prausnitzii strain CNCM I 4541 NODE_10_length_98653_cov_44.1352_ID_5561, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/190/535/GCF_000190535.1_genomic.fna.gz 0.6610 0.7107 99.44 0.748 99.32-99.55 0.748 0.71-0.78 1 1.504 8257/18480 97.43 7 NC_015160.1 Odoribacter splanchnicus DSM 20712, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/265/365/GCF_000265365.1_genomic.fna.gz 0.6517 0.5957 97.83 0.738 97.64-97.97 0.738 0.69-0.78 1 1.557 4065/15352 95.80 437 NC_018011.1 Alistipes finegoldii DSM 17242, complete sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/009/680/455/GCF_009680455.1_genomic.fna.gz 0.6000 0.4441 98.20 0.679 98.03-98.34 0.679 0.64-0.73 1 1.456 3715/13152 96.00 291 NZ_WKRD01000010.1 Lachnospira eligens strain BIOML-A1 scaffold10_size99411, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/435/555/GCA_000435555.1_genomic.fna.gz 0.5999 0.2337 99.28 0.679 99.10-99.46 0.679 0.63-0.73 1 1.358 2696/6846 97.04 0 FR881491.1 Firmicutes bacterium CAG:176 genomic scaffold, scf4, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/019/411/365/GCA_019411365.1_genomic.fna.gz 0.5684 0.3757 97.32 0.644 97.07-97.52 0.644 0.59-0.71 2 3.684 2399/11654 95.03 4327 DXQT01000001.1 MAG TPA_asm: Roseburia sp. isolate HRGM_Genome_1601 HRGM_Genome_1601_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/001/414/325/GCA_001414325.1_genomic.fna.gz 0.5364 0.4740 98.92 0.607 98.72-99.07 0.607 0.57-0.65 1 1.561 5045/15277 96.49 2 LLKB01000001.1 Butyribacter intestini strain TF01-11 TF01-11.Scaf1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/296/465/GCF_000296465.1_genomic.fna.gz 0.5354 0.4514 98.50 0.606 98.35-98.63 0.606 0.57-0.65 1 1.749 4375/14696 96.17 264 NZ_JH815203.1 Barnesiella intestinihominis YIT 11860 supercont1.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/174/195/GCF_000174195.1_genomic.fna.gz 0.5229 0.5182 96.67 0.592 96.47-96.91 0.592 0.54-0.63 1 1.584 2763/17492 94.22 2150 NZ_ACFY01000179.1 Roseburia inulinivorans DSM 16841 R_inulinivorans-1.0.1_Cont604.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/567/195/GCF_025567195.1_genomic.fna.gz 0.4842 0.4029 98.90 0.548 98.72-99.06 0.548 0.51-0.58 1 1.495 4374/14520 96.20 11 NZ_JAOQJF010000001.1 Alitiscatomonas aceti strain f_CCE .18048_1_85.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/613/465/GCA_000613465.1_genomic.fna.gz 0.4625 0.6330 98.80 0.524 98.66-98.93 0.524 0.49-0.55 1 1.423 6839/24226 96.00 283 BAJA01000118.1 Bacteroides nordii WAL 11050 = JCM 12987 DNA, contig: JCM12987.contig00118, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/464/595/GCF_003464595.1_genomic.fna.gz 0.4549 0.7356 96.44 0.515 96.29-96.60 0.515 0.48-0.54 1 1.334 3957/28565 93.82 3236 NZ_QRZF01000001.1 Bacteroides intestinalis strain AF14-32 AF14-32.Scaf1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/014/297/285/GCF_014297285.1_genomic.fna.gz 0.4399 0.3953 96.67 0.498 96.45-96.93 0.498 0.45-0.54 1 1.397 2116/15406 93.80 542 NZ_JACOQI010000001.1 Dysosmobacter segnis strain BX15 BX-15_ctg0001, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/025/150/425/GCA_025150425.1_genomic.fna.gz 0.4390 0.2896 97.02 0.497 96.74-97.29 0.497 0.46-0.56 1 1.298 1753/11421 94.13 76 CP102281.1 [Eubacterium] siraeum strain DSM 15702 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/151/215/GCF_025151215.1_genomic.fna.gz 0.3613 0.3872 99.58 0.409 99.43-99.77 0.409 0.38-0.43 1 1.224 5764/18503 96.31 0 NZ_CP102286.1 Parabacteroides merdae ATCC 43184 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/269/275/GCF_003269275.1_genomic.fna.gz 0.3607 0.2046 98.54 0.408 98.28-98.86 0.408 0.36-0.45 1 1.217 2104/9898 95.13 3 NZ_QLTS01000001.1 Phascolarctobacterium faecium DSM 14760 Ga0215641_101, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/005/121/165/GCF_005121165.3_genomic.fna.gz 0.3522 0.3083 97.94 0.399 97.69-98.20 0.399 0.36-0.43 1 1.376 2616/15083 94.51 759 NZ_CP034413.3 Dysosmobacter welbionis strain J115 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/020/687/385/GCF_020687385.1_genomic.fna.gz 0.3439 0.2599 97.90 0.389 97.64-98.16 0.389 0.35-0.43 1 1.290 2228/13312 94.40 84 NZ_JAJEQM010000010.1 Hominilimicola fabiformis strain CLA-AA-H232 NODE_10_length_105690_cov_43.690493, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/701/705/GCF_000701705.1_genomic.fna.gz 0.3226 0.3657 98.58 0.365 98.39-98.79 0.365 0.34-0.39 1 1.215 3877/19755 94.88 2 NZ_JNJP01000001.1 Bilophila wadsworthia ATCC 49260 T370DRAFT_scaffold00001.1_C, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/019/410/105/GCA_019410105.1_genomic.fna.gz 0.3148 0.1121 99.03 0.356 98.66-99.46 0.356 0.30-0.41 1 1.208 1378/6219 95.26 4 DXTB01000001.1 MAG TPA_asm: Clostridiales bacterium isolate HRGM_Genome_2519 HRGM_Genome_2519_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/020/564/355/GCF_020564355.1_genomic.fna.gz 0.3070 0.2265 98.41 0.348 98.10-98.72 0.348 0.31-0.38 1 1.249 2307/12905 94.60 195 NZ_JAJCRR010000001.1 Lachnospira pectinoschiza strain SL.1.13 OMCMFGFK_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/003/573/975/GCA_003573975.1_genomic.fna.gz 0.2985 0.2600 97.85 0.338 97.53-98.17 0.338 0.30-0.37 1 1.310 2150/14679 93.99 480 AP018533.1 Clostridiales bacterium CCNA10 DNA, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/477/605/GCF_003477605.1_genomic.fna.gz 0.2984 0.2270 97.78 0.338 97.42-98.07 0.338 0.30-0.37 1 1.301 1925/13453 93.92 151 NZ_QUDR01000001.1 Clostridium sp. AF37-5 AF37-5.Scaf1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/239/295/GCF_000239295.1_genomic.fna.gz 0.2887 0.2699 97.76 0.327 97.41-98.05 0.327 0.29-0.36 1 1.198 2260/16381 93.81 772 NZ_JH417617.1 Flavonifractor plautii ATCC 29863 Scfld0, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/145/845/GCF_025145845.1_genomic.fna.gz 0.2869 0.2675 97.86 0.325 97.58-98.14 0.325 0.29-0.35 1 1.476 2417/15600 94.16 338 NZ_CP102253.1 Alistipes shahii WAL 8301 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/004/000/625/GCA_004000625.1_genomic.fna.gz 0.2678 0.1657 98.48 0.303 98.07-98.85 0.303 0.27-0.34 1 1.186 1760/10810 94.31 40 SAUS01000023.1 MAG: Candidatus Cibiobacter qucibialis isolate SGB15286A NODE_1001_length_34658_cov_24.6781, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/958/387/885/GCF_958387885.1_genomic.fna.gz 0.2676 0.3571 95.55 0.303 95.17-95.95 0.303 0.26-0.34 1 1.856 1513/23470 91.54 3812 NZ_CATXNQ010000001.1 MAG: uncultured Bacteroides sp. isolate SRR17798034_bin.10_MetaWRAP_v1.3_MAG ERZ18698386.37, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/020/687/125/GCA_020687125.1_genomic.fna.gz 0.2572 0.2107 96.58 0.291 96.13-96.98 0.291 0.25-0.33 1 1.265 1246/14465 92.40 497 JAJEPY010000100.1 Oscillospiraceae bacterium CLA-AA-H269 NODE_100_length_8506_cov_27.135485, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/145/285/GCF_025145285.1_genomic.fna.gz 0.2413 0.2286 96.80 0.273 96.42-97.10 0.273 0.25-0.31 1 1.180 1447/16516 92.45 981 NZ_CP102251.1 Alistipes onderdonkii strain DSM 19147 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/425/045/GCF_000425045.1_genomic.fna.gz 0.2201 0.1230 99.61 0.249 99.20-100.02 0.249 0.22-0.29 1 1.142 1899/9707 94.87 2 NZ_AULA01000001.1 Acidaminococcus intestini DSM 21505 H503DRAFT_scaffold00001.1_C, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/014/287/635/GCF_014287635.1_genomic.fna.gz 0.2102 0.1803 96.89 0.238 96.43-97.48 0.238 0.19-0.27 1 1.682 1225/15162 92.20 1151 NZ_JACOPH010000001.1 Roseburia zhanii strain BX1005 DNA.677_ctg0001, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/902/490/355/GCA_902490355.1_genomic.fna.gz 0.2085 0.1261 97.67 0.236 97.15-98.05 0.236 0.21-0.28 1 1.120 1067/10545 92.88 42 CABUDN010000001.1 MAG TPA_asm: uncultured Oscillibacter sp. isolate MGYG-HGUT-03910 genome assembly, contig: GUT_GENOME249374_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/150/745/GCF_025150745.1_genomic.fna.gz 0.1970 0.1377 98.16 0.223 97.69-98.67 0.223 0.18-0.26 1 1.401 1338/11828 93.21 233 NZ_CP102282.1 Eubacterium ventriosum strain ATCC 27560 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/478/335/GCF_003478335.1_genomic.fna.gz 0.1937 0.1510 97.60 0.219 97.16-97.95 0.219 0.19-0.25 1 1.216 1247/13379 92.63 544 NZ_QUFB01000001.1 Clostridium sp. AM49-4BH AM49-4BH.Scaf1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/900/549/885/GCA_900549885.1_genomic.fna.gz 0.1905 0.1261 98.99 0.216 98.52-99.43 0.216 0.19-0.25 1 1.144 1652/11652 93.89 18 URQA01000001.1 uncultured Clostridiales bacterium isolate UMGS1232 genome assembly, contig: NODE_121_length_87095_cov_7.098794, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/437/595/GCA_000437595.1_genomic.fna.gz 0.1778 0.1269 97.81 0.201 97.24-98.14 0.201 0.18-0.24 1 1.101 1165/12681 92.59 7 FR899776.1 Faecalibacterium sp. CAG:74 genomic scaffold, scf6, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/433/315/GCA_000433315.1_genomic.fna.gz 0.1760 0.0704 97.80 0.199 97.22-98.35 0.199 0.16-0.24 1 1.102 644/7106 92.55 1 FR893351.1 Firmicutes bacterium CAG:345 genomic scaffold, scf3, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/024/715/GCF_003024715.1_genomic.fna.gz 0.1759 0.1411 96.48 0.199 95.83-97.02 0.199 0.16-0.25 1 1.429 836/13933 91.32 573 NZ_PYLO01000001.1 Clostridium fessum strain SNUG30386 scaffold_0, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/567/565/GCF_025567565.1_genomic.fna.gz 0.1665 0.1252 96.24 0.189 95.46-96.94 0.189 0.15-0.24 1 1.283 693/13204 90.93 451 NZ_JAOQKF010000001.1 Muriventricola aceti strain H5_61 .14207_7_60.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/003/507/655/GCA_003507655.1_genomic.fna.gz 0.1650 0.0894 97.59 0.187 96.90-98.07 0.187 0.15-0.24 1 1.100 767/9598 92.17 45 DNUZ01000039.1 MAG TPA_asm: Lachnospiraceae bacterium isolate UBA11774 contig_1120, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/003/112/755/GCA_003112755.1_genomic.fna.gz 0.1573 0.1648 97.57 0.178 97.07-98.05 0.178 0.15-0.21 1 1.112 1228/16161 92.02 168 BFBT01000001.1 Lawsonibacter asaccharolyticus DNA, contig01, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/916/720/325/GCA_916720325.1_genomic.fna.gz 0.1512 0.0512 97.67 0.171 96.99-98.34 0.171 0.12-0.22 1 1.092 447/5906 92.01 0 CAKAQT010000001.1 MAG TPA_asm: Haemophilus parainfluenzae isolate SRR15235652_bin.8_metaWRAP_v1.1_MAG genome assembly, contig: NODE_155_length_42209_cov_65.040233, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/020/686/965/GCF_020686965.1_genomic.fna.gz 0.1448 0.1239 96.21 0.164 95.37-96.92 0.164 0.12-0.21 1 1.147 688/15067 90.52 441 NZ_JAJEPS010000010.1 Hominiventricola filiformis strain CLA-AA-H276 NODE_10_length_115340_cov_22.532009, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/905/214/375/GCA_905214375.1_genomic.fna.gz 0.1399 0.0590 96.19 0.158 95.14-96.95 0.158 0.12-0.22 1 1.085 329/7492 90.41 191 CAJMMG010000001.1 TPA_asm: uncultured bacterium isolate ERR1600749-bin.20 genome assembly, contig: NODE_6_length_302762_cov_605.600554, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/900/083/545/GCF_900083545.1_genomic.fna.gz 0.1334 0.1243 95.70 0.151 95.02-96.55 0.151 0.11-0.19 1 1.369 582/16195 89.83 433 NZ_LT559258.1 Alistipes provencensis strain Marseille-P2431T, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/003/531/585/GCA_003531585.1_genomic.fna.gz 0.1301 0.0843 98.60 0.147 97.87-99.16 0.147 0.12-0.19 1 1.096 1004/11335 92.48 3 DQFX01000062.1 MAG TPA_asm: Oscillospiraceae bacterium isolate UBA10671 contig_1103, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/000/153/925/GCF_000153925.1_genomic.fna.gz 0.1211 0.0813 98.23 0.137 97.49-98.87 0.137 0.11-0.17 1 1.178 824/11176 91.93 76 NZ_DS264383.1 [Ruminococcus] torques ATCC 27756 Scfld0240, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/019/418/625/GCA_019418625.1_genomic.fna.gz 0.1160 0.0722 96.34 0.131 95.26-97.20 0.131 0.09-0.18 1 1.091 427/11031 90.04 113 DYBL01000001.1 MAG TPA_asm: Clostridiales bacterium isolate HRGM_Genome_1975 HRGM_Genome_1975_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/004/154/955/GCF_004154955.1_genomic.fna.gz 0.1158 0.0914 96.55 0.131 95.57-97.37 0.131 0.09-0.19 1 1.065 570/13798 90.23 113 NZ_CP011524.1 Intestinimonas butyriciproducens strain SRB-521-5-I chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/027/667/425/GCF_027667425.1_genomic.fna.gz 0.1156 0.1071 96.24 0.131 95.45-96.95 0.131 0.09-0.17 1 1.245 616/16352 89.96 712 NZ_JAQEGR010000001.1 Fusicatenibacter saccharivorans strain AM67-22ACA AM67-22ACA.Scaf1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/020/555/865/GCA_020555865.1_genomic.fna.gz 0.1128 0.0608 98.02 0.128 97.10-99.00 0.128 0.09-0.17 1 1.107 610/9466 91.53 64 JAJCJJ010000001.1 Bacterium 210917-DFI.7.65 strain DFI.7.65 OHJDKNLD_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/025/567/095/GCF_025567095.1_genomic.fna.gz 0.1111 0.1040 96.75 0.126 95.92-97.62 0.126 0.09-0.16 1 1.128 690/16241 90.31 385 NZ_JAOQJH010000001.1 Anthropogastromicrobium aceti strain H6_35 .14207_7_90.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/904/394/705/GCA_904394705.1_genomic.fna.gz 0.1095 0.0532 98.70 0.124 97.86-99.47 0.124 0.10-0.16 1 1.067 671/8626 92.09 4 CAJFNJ010000001.1 Candidatus Avimicrobium caecorum isolate Coassembly_mag_137 genome assembly, contig: MAGpy_11413_min2k_bin_137_fak87_61810, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/018/918/025/GCF_018918025.1_genomic.fna.gz 0.1020 0.0675 96.01 0.116 94.81-97.21 0.116 0.07-0.17 1 1.107 355/11498 89.39 185 NZ_JAHLPT010000001.1 Oscillibacter sp. MSJ-31 M31_ctg0001, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/002/834/225/GCF_002834225.1_genomic.fna.gz 0.1007 0.0531 96.07 0.114 94.63-97.53 0.114 0.07-0.19 1 1.092 282/9053 89.41 16 NZ_NNSR01000001.1 Ruminococcus bromii strain ATCC 27255 contig000001, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/003/697/165/GCF_003697165.2_genomic.fna.gz 0.0905 0.1115 96.91 0.102 95.87-97.75 0.102 0.08-0.14 1 1.051 781/21223 89.90 2 NZ_CP033092.2 Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 chromosome, complete genome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/900/543/625/GCA_900543625.1_genomic.fna.gz 0.0817 0.0409 96.94 0.093 95.47-98.45 0.093 0.06-0.16 1 1.044 294/8707 89.65 18 UQSF01000001.1 uncultured Clostridiales bacterium isolate UMGS596 genome assembly, contig: NODE_6_length_233473_cov_17.826093, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/001/517/625/GCF_001517625.2_genomic.fna.gz 0.0792 0.0661 96.34 0.090 95.18-98.10 0.090 0.05-0.12 1 1.171 385/14279 89.00 185 NZ_LN999822.1 Clostridium sp. AT4 strain AT5, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/018/408/705/GCF_018408705.1_genomic.fna.gz 0.0771 0.0643 95.56 0.087 94.16-97.31 0.087 0.05-0.14 1 1.092 292/14246 88.21 603 NZ_AP023420.1 Pusillibacter faecalis strain MM59 chromosome ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/014/288/115/GCF_014288115.1_genomic.fna.gz 0.0761 0.0538 98.03 0.086 97.09-99.29 0.086 0.06-0.12 1 1.161 572/12439 90.54 140 NZ_JACOOK010000001.1 Alistipes hominis strain New-7 N7_ctg01, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/432/135/GCA_000432135.1_genomic.fna.gz 0.0732 0.0455 97.51 0.083 96.09-98.62 0.083 0.06-0.13 1 1.045 403/11056 89.87 9 HF990512.1 Firmicutes bacterium CAG:124 genomic scaffold, scf7, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/900/549/405/GCA_900549405.1_genomic.fna.gz 0.0688 0.0345 98.42 0.078 96.84-99.93 0.078 0.05-0.13 1 1.042 401/8773 90.53 97 URNZ01000001.1 uncultured Clostridiales bacterium isolate UMGS1178 genome assembly, contig: NODE_166_length_104531_cov_4.723898, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/019/419/425/GCA_019419425.1_genomic.fna.gz 0.0647 0.0325 96.37 0.073 94.33-98.32 0.073 0.03-0.14 1 1.035 198/8826 88.47 5 DXZZ01000001.1 MAG TPA_asm: Collinsella sp. isolate HRGM_Genome_0506 HRGM_Genome_0506_1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/905/196/875/GCF_905196875.1_genomic.fna.gz 0.0629 0.0872 97.47 0.071 96.36-98.50 0.071 0.05-0.10 1 1.050 761/24489 89.41 75 NZ_CAJJWO010000001.1 MAG: uncultured Parabacteroides sp. isolate ERR260169-bin.9, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/959/608/595/GCA_959608595.1_genomic.fna.gz 0.0535 0.0155 96.57 0.061 93.63-96.87 0.061 0.06-0.14 1 1.029 102/5113 88.14 0 CAUHTB010000001.1 MAG TPA_asm: uncultured Veillonella sp. isolate SRR16280078_bin.7_MetaWRAP_v1.3_MAG genome assembly, contig: ERZ19289626.1243, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/905/209/085/GCA_905209085.1_genomic.fna.gz 0.0474 0.0358 98.07 0.054 96.21-99.83 0.054 0.03-0.09 1 1.026 383/13425 89.16 0 CAJLRM010000001.1 MAG TPA_asm: uncultured Clostridiales bacterium isolate ERR1600743-bin.83 genome assembly, contig: NODE_1_length_705068_cov_32.696169, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/944/387/035/GCA_944387035.1_genomic.fna.gz 0.0472 0.0261 96.94 0.053 94.85-98.34 0.053 0.03-0.10 1 1.036 193/9700 88.13 246 CALXDJ010000001.1 MAG: uncultured Oscillospiraceae bacterium isolate BRZ_EH__bin138 genome assembly, contig: BRZ_EH__NODE_92_length_207987_cov_11.079886, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/900/545/815/GCA_900545815.1_genomic.fna.gz 0.0465 0.0224 95.89 0.053 93.38-96.42 0.053 0.05-0.12 1 1.042 118/8452 87.13 30 URAM01000001.1 uncultured Clostridiales bacterium isolate UMGS818 genome assembly, contig: NODE_16_length_217724_cov_5.471505, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/900/553/545/GCA_900553545.1_genomic.fna.gz 0.0401 0.0166 97.19 0.045 94.30-97.86 0.045 0.04-0.11 1 1.022 135/7341 87.91 27 USDP01000001.1 uncultured Clostridiales bacterium isolate UMGS1621 genome assembly, contig: NODE_647_length_45097_cov_3.755917, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/910/585/405/GCA_910585405.1_genomic.fna.gz 0.0332 0.0244 98.75 0.038 96.77-100.78 0.038 0.02-0.07 1 1.027 328/13070 88.79 0 CAJUDO010000001.1 MAG TPA_asm: uncultured Peptococcaceae bacterium isolate MGBC129548 genome assembly, contig: MGBC129548.1, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCA/000/431/335/GCA_000431335.1_genomic.fna.gz 0.0327 0.0114 99.13 0.037 95.65-99.47 0.037 0.03-0.09 1 1.018 165/5958 89.07 0 FR888013.1 Clostridium sp. CAG:343 genomic scaffold, scf4, whole genome shotgun sequence ../../ASAIM/data/CSM7KOLE_R1.fastq.gz gtdb_genomes_reps_r220/database/GCF/900/106/845/GCF_900106845.1_genomic.fna.gz 0.0183 0.0139 100.00 0.021 97.74-100.83 0.021 0.02-0.05 1 1.027 296/12280 88.68 0 NZ_LT629846.1 Romboutsia timonensis strain Marseille-P326, whole genome shotgun sequence