Mercurial > repos > iuc > tooldistillator_summarize

view test-data/plasmidfinder/plasmid_hit.fasta @ 11:f4f71128f097 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/tooldistillator commit 5afafa93bbb331db2e3f2e700714ff60bf467b27
author iuc
date Wed, 05 Nov 2025 12:59:52 +0000
parents 05c1bcba20c9
children
line wrap: on
line source

>contig00073 len=5209 cov=684.6 corr=0 origname=NODE_73_length_5209_cov_684.601877_pilon sw=shovill-spades/1.1.0 date=20240109:2682..2833:Col156_1__NC_009781:94.155844
TACGGGATGGGGCGAAACTGCCACCTGTTCGAAATGACGCGCAAATGGGCTTACAGGGCG
ATTCGTCAGGGCTGGCCTGAATTCTCACAGTGGCTTGATGCCGTGATTCAGCGTGTCGAA
ATGTACAACGCATCGCTTCCTGTTCCGCTTTCAC
>contig00076 len=4283 cov=1084.3 corr=0 origname=NODE_76_length_4283_cov_1084.318052_pilon sw=shovill-spades/1.1.0 date=20240109:2022..2135:Col440I_1__CP023920:95.614035
ATGCACGAACCCCCCGTTCAGTCCGACTGCTGCGTCTTATCCGGTAACTATCATCTTGAG
TCCAACCCGGTAAGACATGCAAAAGCACCACTGGCAGCAGCCACCGGTAACTGA
>contig00062 len=8415 cov=15.1 corr=0 origname=NODE_62_length_8415_cov_15.096154_pilon sw=shovill-spades/1.1.0 date=20240109:5809..6490:IncFIB(AP001918)_1__AP001918:99.266862
CTGTTTATTCTTTTACTGTCCACAGGCAGAAGGCTTTCTGGAAAACGAAAATTCAGACAT
CAAAAAACTGTTCGGCGAGGTGGATAAGTCGTCCGGTGAGCTGGTGACACTGACACCAAA
CAATAACAACACCGTACAACCTGTGGCGCTGATGCGTCTGGGCGTTTTTGTACCGACCCT
TAAATCACTGAAGAACAGTAAAAAAAATACACTGTCACGTACTGATGCCACGGAAGAGCT
GACTCGTCTTTCCC
>contig00028 len=62434 cov=14.4 corr=0 origname=NODE_28_length_62434_cov_14.440783_pilon sw=shovill-spades/1.1.0 date=20240109:9123..9384:IncFII_1__AY458016:96.183206
CACACCATCCTGCACTTACAATGCGCAGAAGGAGCGAGCACAGAAAGAAGTCTTGAACTT
TTCCGGGCATATAACTATACTCCCCGCATAGCTGAATTGTTGGCTATACGGTTTAAGTGG
GCCCCGGTAATCTT-TTCGTACTCGCCAAAGTTGAAGAAGATTATCGGGGTTTTTGCTTT
TCTGGCTCCTGTAAATCCACATCAGAACCAGTTCCTTGCCACCTTACGGCGTGGCCAGCC
ACAAAATTCCTTAAACGATCAG
>contig00051 len=2083 cov=17.5 corr=0 origname=NODE_51_length_2083_cov_17.526074_pilon sw=shovill-spades/1.1.0 date=20230213:127..897:repUS12_2_repB(SAP014A)_GQ900379:88.013699
ATGTGTCCTAATAGTAGCATTTATTCAGATGAAAAATCAAGGGTTTTAGTGGACAAGACA
AAAAGTGGAAAAGTGAGACCATGGAGAGAAAAGAAAATCGCTAATGTTGATTACTTTGAA
CTTCTGCATATTCTTGAATTTAAAAAGGCTGAAAGAGTAAAAGATTGTGCTGAAATATTA
GAGTATAAACAAAATCGTGAAACAGGCGAAAGAAAGTTGTATCGAGTGTGGTTTTGTAAA
TCCAGGCTTTGTCCAATGTGCAACTGGAGGAGAGCAATGAAACATGGCATTCAGTCACAA
AAGGTTGTTGCTGAAGT
>contig00026 len=35051 cov=66.2 corr=0 origname=NODE_26_length_35051_cov_66.162954_pilon sw=shovill-spades/1.1.0 date=20230213:21156..22313:repUS40_1_repB(pE394)_KP399637:100.000000
ATGCTCAATTCTAGTATATCACGAAAGGTACTTATGATGAATGACATTCAAAACAAAAAA
ATAGTTCAAGACAATGATTTAATTGTAAGTGTCGCAAAAATGGATAAGACACCCATGAAA
TTTTTTGAATTAGCAGTCGCCAGTTTAGATATTAAGAATATTCCTGCTGATCGAACTGTT
CATGTTTCTAAAGAATTATTGTATTCCTTCTTTGACGCAAAAAGTGAAAATAAACATACA
CGCTTTAAAGACGCTGTTCTAACTGTTCATGAGCAAGCAGTGTTTCTAATGCGAGAATTA
AATGAGCGCAAAGGAAAATATGAATATCAAGTGATTAGTCCATTGGAAAGAACTTCTTGG
AATGATTATGA
>contig00023 len=45935 cov=46.6 corr=0 origname=NODE_23_length_45935_cov_46.624847_pilon sw=shovill-spades/1.1.0 date=20230213:3630..4643:rep9b_2_prgW(EF62pC)_CP002494:100.000000
ATGAACGATTTTCAATTTATTTCAGCTAATGAAACCTATAGAAATTTGTATTACCAATTA
CCTAAAGTACTTTTTACATCAGAATTTTATAAGACTATGTCTAATGATAGTAAAATAGCT
TACGCAATGTTGCAAGACCGATGTGAATATTCAATACAAAATAATTGGATTGATCAAGAT
GGGCATATATATTTTATCTTTACACGAAATGAACTGATGGATATTTTAGGGTGTAAAGAA
AATAAAATTGCAAAAATAAAAAAAGAATTAAAAGACAAAAATTTACTTTATGAAAAACGT
ATTCCTCCGAAAAAACTCTCTACTGGTGAATTCAA
>contig00048 len=5336 cov=19.5 corr=0 origname=NODE_48_length_5336_cov_19.468228_pilon sw=shovill-spades/1.1.0 date=20230213:3276..4214:rep7a_8_ORF11(pRE25)_X92945:100.000000
ATGAAGAAAATTGATGAAAAATTAGCTGCAGAAATCTCACTAAAAAAACCGGCCGTCTCT
AATAGCCGGTTAAGTAATAGCCGGTTAAGTGGTCAAACTTTGGGAAAATCTCAACCCGCA
TTAAGTTTTGATGCCATGACAATCGTTGGAAATTTGAACAAAACTAATGCTAAAAAGCTA
TCTGACTTTATGAGTGTAGAGCCACAAATACGACTTTGGGATATACTTCAAACAAAGTTT
AAAGCTAAGGCACTTCAAGAAAAAGTTTATATCGAATATGACAAAGTAAAAGCAGATACT
TGGGATAGACGTAATATGCGTGTTGAATTTAATCCCAATAAACTCACACATGAAGAAATG
ATTTGGTTAAAA
>contig00040 len=12074 cov=69.2 corr=0 origname=NODE_40_length_12074_cov_69.205993_pilon sw=shovill-spades/1.1.0 date=20230213:8225..9430:repUS43_1_CDS12738(DOp1)_CP003584:100.000000
TTGGAGGGATTTTTACTGAATGAACAAACTTGGTTACAGCATTTAAAAGAAAAACGCTTG
GCTTATGGACTATCTCAAAACCGTTTAGCTGTTGCGACTGGTATTACAAGGCAGTATCTA
AGCGATATTGAAACAGGAAAAGTCAAGCCATCAGAGGATTTACAGCAGTCCCTTTGGGAA
>CJ_080_C_ESCO_S157_contig67:6947..7088:Col156_1__NC_009781:90.909091
TACGGGATGGGGCGAAACTGCCACCTGTTCGAAATGACGCGCAAATGGGCTTACAGGGCG
ATTCGTCAGGGCTGGCCTGAATTCTCACAGTGGCTTGATGCCGTGATTCAGCGTGTCGAA
ATGTACAACGCATCGCTTCCTGTTCCGCTTTCAC
>CJ_080_C_ESCO_S157_contig1
TTTTCGCCACCACAATGGCCAGATCGCCGTAATACCCCTTGAAGGACACCACTGCGCCCA
GATCTTTCACTGCCGTTTCGAGTTGAGAATTTGAACCGCGACGGGTATCCAGTTTTTCGC
GGAACAGCTTAAAACCATTCAGAAGACGCCAGCCGGTACCGTCCATAATGGCAATATTCA
CAAGACCGCTGGCCTGGTCGCAGTAGAGGTCAATATCATGTGTAGGATCGAACGTGTCAC