Mercurial > repos > iuc > transdecoder
diff test-data/raw/test.fa.transdecoder.gff3 @ 0:8aef9a17faae draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transdecoder commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
| author | iuc |
|---|---|
| date | Fri, 20 Nov 2015 06:49:25 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/raw/test.fa.transdecoder.gff3 Fri Nov 20 06:49:25 2015 -0500 @@ -0,0 +1,41 @@ +CUFF.36.1 transdecoder gene 1 1498 . + . ID=CUFF.36.1|g.4;Name=ORF%20CUFF.36.1%7Cg.4%20CUFF.36.1%7Cm.4%20type%3Acomplete%20len%3A131%20%28%2B%29 +CUFF.36.1 transdecoder mRNA 1 1498 . + . ID=CUFF.36.1|m.4;Parent=CUFF.36.1|g.4;Name=ORF%20CUFF.36.1%7Cg.4%20CUFF.36.1%7Cm.4%20type%3Acomplete%20len%3A131%20%28%2B%29 +CUFF.36.1 transdecoder five_prime_UTR 1 894 . + . ID=CUFF.36.1|m.4.utr5p1;Parent=CUFF.36.1|m.4 +CUFF.36.1 transdecoder exon 1 1498 . + . ID=CUFF.36.1|m.4.exon1;Parent=CUFF.36.1|m.4 +CUFF.36.1 transdecoder CDS 895 1287 . + . ID=cds.CUFF.36.1|m.4;Parent=CUFF.36.1|m.4 +CUFF.36.1 transdecoder three_prime_UTR 1288 1498 . + . ID=CUFF.36.1|m.4.utr3p1;Parent=CUFF.36.1|m.4 + +CUFF.4.1 transdecoder gene 1 555 . + . ID=CUFF.4.1|g.5;Name=ORF%20CUFF.4.1%7Cg.5%20CUFF.4.1%7Cm.5%20type%3A3prime_partial%20len%3A120%20%28%2B%29 +CUFF.4.1 transdecoder mRNA 1 555 . + . ID=CUFF.4.1|m.5;Parent=CUFF.4.1|g.5;Name=ORF%20CUFF.4.1%7Cg.5%20CUFF.4.1%7Cm.5%20type%3A3prime_partial%20len%3A120%20%28%2B%29 +CUFF.4.1 transdecoder five_prime_UTR 1 198 . + . ID=CUFF.4.1|m.5.utr5p1;Parent=CUFF.4.1|m.5 +CUFF.4.1 transdecoder exon 1 555 . + . ID=CUFF.4.1|m.5.exon1;Parent=CUFF.4.1|m.5 +CUFF.4.1 transdecoder CDS 199 555 . + . ID=cds.CUFF.4.1|m.5;Parent=CUFF.4.1|m.5 + +CUFF.51.1 transdecoder gene 1 4342 . + . ID=CUFF.51.1|g.2;Name=ORF%20CUFF.51.1%7Cg.2%20CUFF.51.1%7Cm.2%20type%3Acomplete%20len%3A347%20%28%2B%29 +CUFF.51.1 transdecoder mRNA 1 4342 . + . ID=CUFF.51.1|m.2;Parent=CUFF.51.1|g.2;Name=ORF%20CUFF.51.1%7Cg.2%20CUFF.51.1%7Cm.2%20type%3Acomplete%20len%3A347%20%28%2B%29 +CUFF.51.1 transdecoder five_prime_UTR 1 316 . + . ID=CUFF.51.1|m.2.utr5p1;Parent=CUFF.51.1|m.2 +CUFF.51.1 transdecoder exon 1 4342 . + . ID=CUFF.51.1|m.2.exon1;Parent=CUFF.51.1|m.2 +CUFF.51.1 transdecoder CDS 317 1357 . + . ID=cds.CUFF.51.1|m.2;Parent=CUFF.51.1|m.2 +CUFF.51.1 transdecoder three_prime_UTR 1358 4342 . + . ID=CUFF.51.1|m.2.utr3p1;Parent=CUFF.51.1|m.2 + +CUFF.51.1 transdecoder gene 1 4342 . + . ID=CUFF.51.1|g.1;Name=ORF%20CUFF.51.1%7Cg.1%20CUFF.51.1%7Cm.1%20type%3Acomplete%20len%3A372%20%28%2B%29 +CUFF.51.1 transdecoder mRNA 1 4342 . + . ID=CUFF.51.1|m.1;Parent=CUFF.51.1|g.1;Name=ORF%20CUFF.51.1%7Cg.1%20CUFF.51.1%7Cm.1%20type%3Acomplete%20len%3A372%20%28%2B%29 +CUFF.51.1 transdecoder five_prime_UTR 1 2631 . + . ID=CUFF.51.1|m.1.utr5p1;Parent=CUFF.51.1|m.1 +CUFF.51.1 transdecoder exon 1 4342 . + . ID=CUFF.51.1|m.1.exon1;Parent=CUFF.51.1|m.1 +CUFF.51.1 transdecoder CDS 2632 3747 . + . ID=cds.CUFF.51.1|m.1;Parent=CUFF.51.1|m.1 +CUFF.51.1 transdecoder three_prime_UTR 3748 4342 . + . ID=CUFF.51.1|m.1.utr3p1;Parent=CUFF.51.1|m.1 + +CUFF.57.1 transdecoder gene 1 3853 . + . ID=CUFF.57.1|g.3;Name=ORF%20CUFF.57.1%7Cg.3%20CUFF.57.1%7Cm.3%20type%3Acomplete%20len%3A1032%20%28%2B%29 +CUFF.57.1 transdecoder mRNA 1 3853 . + . ID=CUFF.57.1|m.3;Parent=CUFF.57.1|g.3;Name=ORF%20CUFF.57.1%7Cg.3%20CUFF.57.1%7Cm.3%20type%3Acomplete%20len%3A1032%20%28%2B%29 +CUFF.57.1 transdecoder five_prime_UTR 1 188 . + . ID=CUFF.57.1|m.3.utr5p1;Parent=CUFF.57.1|m.3 +CUFF.57.1 transdecoder exon 1 3853 . + . ID=CUFF.57.1|m.3.exon1;Parent=CUFF.57.1|m.3 +CUFF.57.1 transdecoder CDS 189 3284 . + . ID=cds.CUFF.57.1|m.3;Parent=CUFF.57.1|m.3 +CUFF.57.1 transdecoder three_prime_UTR 3285 3853 . + . ID=CUFF.57.1|m.3.utr3p1;Parent=CUFF.57.1|m.3 + +CUFF.9.1 transdecoder gene 1 804 . + . ID=CUFF.9.1|g.6;Name=ORF%20CUFF.9.1%7Cg.6%20CUFF.9.1%7Cm.6%20type%3Acomplete%20len%3A156%20%28%2B%29 +CUFF.9.1 transdecoder mRNA 1 804 . + . ID=CUFF.9.1|m.6;Parent=CUFF.9.1|g.6;Name=ORF%20CUFF.9.1%7Cg.6%20CUFF.9.1%7Cm.6%20type%3Acomplete%20len%3A156%20%28%2B%29 +CUFF.9.1 transdecoder five_prime_UTR 1 172 . + . ID=CUFF.9.1|m.6.utr5p1;Parent=CUFF.9.1|m.6 +CUFF.9.1 transdecoder exon 1 804 . + . ID=CUFF.9.1|m.6.exon1;Parent=CUFF.9.1|m.6 +CUFF.9.1 transdecoder CDS 173 640 . + . ID=cds.CUFF.9.1|m.6;Parent=CUFF.9.1|m.6 +CUFF.9.1 transdecoder three_prime_UTR 641 804 . + . ID=CUFF.9.1|m.6.utr3p1;Parent=CUFF.9.1|m.6 +