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view test-data/gencode/test.fa.transdecoder.gff3 @ 4:0db979fead3a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transdecoder commit f0e5f4748034bc0f1faafcec65bffa34b64a4781
author iuc
date Thu, 01 Jun 2017 06:04:12 -0400
parents 8aef9a17faae
children
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CUFF.36.1	transdecoder	gene	1	1498	.	+	.	ID=CUFF.36.1|g.5;Name=ORF%20CUFF.36.1%7Cg.5%20CUFF.36.1%7Cm.5%20type%3Acomplete%20len%3A169%20%28%2B%29
CUFF.36.1	transdecoder	mRNA	1	1498	.	+	.	ID=CUFF.36.1|m.5;Parent=CUFF.36.1|g.5;Name=ORF%20CUFF.36.1%7Cg.5%20CUFF.36.1%7Cm.5%20type%3Acomplete%20len%3A169%20%28%2B%29
CUFF.36.1	transdecoder	five_prime_UTR	1	894	.	+	.	ID=CUFF.36.1|m.5.utr5p1;Parent=CUFF.36.1|m.5
CUFF.36.1	transdecoder	exon	1	1498	.	+	.	ID=CUFF.36.1|m.5.exon1;Parent=CUFF.36.1|m.5
CUFF.36.1	transdecoder	CDS	895	1401	.	+	.	ID=cds.CUFF.36.1|m.5;Parent=CUFF.36.1|m.5
CUFF.36.1	transdecoder	three_prime_UTR	1402	1498	.	+	.	ID=CUFF.36.1|m.5.utr3p1;Parent=CUFF.36.1|m.5

CUFF.4.1	transdecoder	gene	1	555	.	+	.	ID=CUFF.4.1|g.7;Name=ORF%20CUFF.4.1%7Cg.7%20CUFF.4.1%7Cm.7%20type%3A3prime_partial%20len%3A120%20%28%2B%29
CUFF.4.1	transdecoder	mRNA	1	555	.	+	.	ID=CUFF.4.1|m.7;Parent=CUFF.4.1|g.7;Name=ORF%20CUFF.4.1%7Cg.7%20CUFF.4.1%7Cm.7%20type%3A3prime_partial%20len%3A120%20%28%2B%29
CUFF.4.1	transdecoder	five_prime_UTR	1	198	.	+	.	ID=CUFF.4.1|m.7.utr5p1;Parent=CUFF.4.1|m.7
CUFF.4.1	transdecoder	exon	1	555	.	+	.	ID=CUFF.4.1|m.7.exon1;Parent=CUFF.4.1|m.7
CUFF.4.1	transdecoder	CDS	199	555	.	+	.	ID=cds.CUFF.4.1|m.7;Parent=CUFF.4.1|m.7

CUFF.51.1	transdecoder	gene	1	4342	.	+	.	ID=CUFF.51.1|g.1;Name=ORF%20CUFF.51.1%7Cg.1%20CUFF.51.1%7Cm.1%20type%3Acomplete%20len%3A372%20%28%2B%29
CUFF.51.1	transdecoder	mRNA	1	4342	.	+	.	ID=CUFF.51.1|m.1;Parent=CUFF.51.1|g.1;Name=ORF%20CUFF.51.1%7Cg.1%20CUFF.51.1%7Cm.1%20type%3Acomplete%20len%3A372%20%28%2B%29
CUFF.51.1	transdecoder	five_prime_UTR	1	2631	.	+	.	ID=CUFF.51.1|m.1.utr5p1;Parent=CUFF.51.1|m.1
CUFF.51.1	transdecoder	exon	1	4342	.	+	.	ID=CUFF.51.1|m.1.exon1;Parent=CUFF.51.1|m.1
CUFF.51.1	transdecoder	CDS	2632	3747	.	+	.	ID=cds.CUFF.51.1|m.1;Parent=CUFF.51.1|m.1
CUFF.51.1	transdecoder	three_prime_UTR	3748	4342	.	+	.	ID=CUFF.51.1|m.1.utr3p1;Parent=CUFF.51.1|m.1

CUFF.51.1	transdecoder	gene	1	4342	.	+	.	ID=CUFF.51.1|g.2;Name=ORF%20CUFF.51.1%7Cg.2%20CUFF.51.1%7Cm.2%20type%3Acomplete%20len%3A347%20%28%2B%29
CUFF.51.1	transdecoder	mRNA	1	4342	.	+	.	ID=CUFF.51.1|m.2;Parent=CUFF.51.1|g.2;Name=ORF%20CUFF.51.1%7Cg.2%20CUFF.51.1%7Cm.2%20type%3Acomplete%20len%3A347%20%28%2B%29
CUFF.51.1	transdecoder	five_prime_UTR	1	316	.	+	.	ID=CUFF.51.1|m.2.utr5p1;Parent=CUFF.51.1|m.2
CUFF.51.1	transdecoder	exon	1	4342	.	+	.	ID=CUFF.51.1|m.2.exon1;Parent=CUFF.51.1|m.2
CUFF.51.1	transdecoder	CDS	317	1357	.	+	.	ID=cds.CUFF.51.1|m.2;Parent=CUFF.51.1|m.2
CUFF.51.1	transdecoder	three_prime_UTR	1358	4342	.	+	.	ID=CUFF.51.1|m.2.utr3p1;Parent=CUFF.51.1|m.2

CUFF.57.1	transdecoder	gene	1	3853	.	+	.	ID=CUFF.57.1|g.4;Name=ORF%20CUFF.57.1%7Cg.4%20CUFF.57.1%7Cm.4%20type%3Acomplete%20len%3A1032%20%28%2B%29
CUFF.57.1	transdecoder	mRNA	1	3853	.	+	.	ID=CUFF.57.1|m.4;Parent=CUFF.57.1|g.4;Name=ORF%20CUFF.57.1%7Cg.4%20CUFF.57.1%7Cm.4%20type%3Acomplete%20len%3A1032%20%28%2B%29
CUFF.57.1	transdecoder	five_prime_UTR	1	188	.	+	.	ID=CUFF.57.1|m.4.utr5p1;Parent=CUFF.57.1|m.4
CUFF.57.1	transdecoder	exon	1	3853	.	+	.	ID=CUFF.57.1|m.4.exon1;Parent=CUFF.57.1|m.4
CUFF.57.1	transdecoder	CDS	189	3284	.	+	.	ID=cds.CUFF.57.1|m.4;Parent=CUFF.57.1|m.4
CUFF.57.1	transdecoder	three_prime_UTR	3285	3853	.	+	.	ID=CUFF.57.1|m.4.utr3p1;Parent=CUFF.57.1|m.4

CUFF.9.1	transdecoder	gene	1	804	.	+	.	ID=CUFF.9.1|g.8;Name=ORF%20CUFF.9.1%7Cg.8%20CUFF.9.1%7Cm.8%20type%3Acomplete%20len%3A156%20%28%2B%29
CUFF.9.1	transdecoder	mRNA	1	804	.	+	.	ID=CUFF.9.1|m.8;Parent=CUFF.9.1|g.8;Name=ORF%20CUFF.9.1%7Cg.8%20CUFF.9.1%7Cm.8%20type%3Acomplete%20len%3A156%20%28%2B%29
CUFF.9.1	transdecoder	five_prime_UTR	1	172	.	+	.	ID=CUFF.9.1|m.8.utr5p1;Parent=CUFF.9.1|m.8
CUFF.9.1	transdecoder	exon	1	804	.	+	.	ID=CUFF.9.1|m.8.exon1;Parent=CUFF.9.1|m.8
CUFF.9.1	transdecoder	CDS	173	640	.	+	.	ID=cds.CUFF.9.1|m.8;Parent=CUFF.9.1|m.8
CUFF.9.1	transdecoder	three_prime_UTR	641	804	.	+	.	ID=CUFF.9.1|m.8.utr3p1;Parent=CUFF.9.1|m.8