Mercurial > repos > iuc > transit_gumbel
diff macros.xml @ 2:c980be2c002c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
| author | iuc |
|---|---|
| date | Tue, 08 Oct 2019 08:24:12 -0400 |
| parents | 202a99525669 |
| children | ecce0cbe659f |
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--- a/macros.xml Tue Jun 25 17:43:58 2019 -0400 +++ b/macros.xml Tue Oct 08 08:24:12 2019 -0400 @@ -9,10 +9,11 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">transit</requirement> + <requirement type="package" version="3.7">python</requirement> <yield /> </requirements> </xml> - <token name="@VERSION@">2.5.2</token> + <token name="@VERSION@">3.0.1</token> <xml name="outputs"> <yield /> <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" /> @@ -43,10 +44,22 @@ <param name="nterm" argument="-iN" type="float" value="0" min="0" max="1" label="Ignore TAs occuring at given fraction of the N terminus." /> <param name="cterm" argument="-iC" type="float" value="0" min="0" max="1" label="Ignore TAs occuring at given fraction of the C terminus." /> </xml> + <xml name="normal"> + <param name="normalization" argument="-n" type="select" label="Normalization method" value="TTR"> + <option value="TTR">TTR</option> + <option value="nonorm">No Normalization</option> + <option value="nzmean">Non-Zero Mean</option> + <option value="totreads">Total read counts</option> + <option value="zinfnb">Zero inflated Negative Binomial model</option> + <option value="quantile">Quantile Normalization</option> + <option value="betageom">Beta-Geometric Correction</option> + </param> + </xml> <xml name="standard_inputs"> <expand macro="inputs" /> <yield /> <expand macro="ignore_tas" /> + <expand macro="normal" /> </xml> <token name="@LINK_INPUTS@"> <![CDATA[ @@ -64,5 +77,6 @@ <token name="@STANDARD_OPTIONS@"> -iN $nterm -tC $cterm + -n $normalization </token> </macros>