Mercurial > repos > iuc > transit_gumbel
view test-data/transit-in1-rep1.wig @ 5:8fc50fe60127 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
author | iuc |
---|---|
date | Sat, 27 Nov 2021 09:48:57 +0000 |
parents | c980be2c002c |
children |
line wrap: on
line source
# from Griffin et al, (2011). PLOS Pathogens, e1002251. variableStep chrom=H37Rv 60 0 72 0 102 0 188 0 246 0 333 0 360 0 426 0 448 0 471 0 483 0 494 0 504 0 514 0 525 0 534 0 601 0 653 0 670 0 706 0 741 0 784 0 794 0 843 0 989 0 1092 0 1104 0 1267 0 1278 0 1345 0 1423 0 1522 0 1552 27 1635 14 1779 0 1782 0 1788 0 1847 0 1858 26 1921 0 2001 0 2012 0 2063 0 2104 0 2141 0 2232 0 2290 0 2315 0 2318 0 2333 0 2344 0 2363 0 2387 0 2404 0 2427 0 2479 0 2507 0 2537 0 2591 0 2648 0 2738 0 2774 0 2845 0 2920 0 3027 0 3056 0 3066 0 3070 0 3119 0 3131 0 3145 0 3222 0 3228 0 3277 0 3283 62 3329 0 3372 0 3379 0 3384 0 3396 0 3412 0 3425 0 3441 0 3467 0 3471 0 3513 0 3591 0 3682 0 3708 63 3728 0 3739 0 3770 13 3782 46 3796 0 3833 1 3925 0 3960 0 3967 0 3986 0 4011 0 4028 0 4094 0 4118 0 4121 0 4130 0 4158 0 4207 0 4217 0 4353 0 4664 0 4721 0 4789 0 4912 0 4961 0 4970 0 4989 0 4995 53 5066 226 5120 12 5128 0 5170 239 5230 0 5273 0 5287 0 5336 0 5364 0 5420 0 5439 0 5517 0 5547 0 5579 0 5586 0 5623 0 5631 0 5669 0 5687 0 5792 0 5977 0 5996 0 6055 0 6128 0 6230 0 6249 0 6286 0 6403 0 6490 0 6502 0 6526 0 6605 0 6612 0 6672 0 6729 0 6793 0 6809 0 6856 0 6944 0 6983 0 7067 0 7077 0 7093 0 7225 0 7265 31 7299 54 7383 0 7392 0 7470 0 7551 0 7578 0 7620 0 7686 0 7763 0 7767 0 7798 0 7865 0 7970 0 8031 0 8077 0 8099 0 8127 0 8219 0 8236 0 8288 0 8295 0 8338 0 8391 0 8394 0 8436 0 8486 0 8546 0 8786 0 8858 0 8874 0 8901 0 9030 0 9045 0 9100 0 9150 0 9165 0 9419 0 9465 0 9492 0 9503 0 9519 0 9526 0 9542 0 9564 0 9624 0 9776 95 9816 9 9850 0 9877 99 9894 0 9903 209 10023 0 10104 0 10277 0 10299 0 10414 0 10426 9 10583 0 10600 0 10608 0 10769 0 10826 61 10857 0 10876 0 10884 0 10892 0 10894 0 10907 0 10923 0 10953 0 11096 0 11119 0 11131 0 11176 0 11198 0 11207 92 11289 21 11301 0 11422 7 11444 0 11530 139 11556 57 11618 0 11659 0 11675 247 11679 202 11733 152 11739 108 11743 82 11749 0 11787 60 11848 8 12042 292 12054 4 12145 0 12250 111 12352 100 12466 54 12491 190 12512 0 12530 0 12621 69 12663 85 12750 58 12798 21 13025 339 13046 29 13079 23 13155 0 13168 77 13275 0 13309 0 13322 0 13325 431 13369 18 13459 0 13469 0 13486 0 13560 81 13567 0 13595 0 13608 0 13669 0 13686 0 13699 0 13772 0 13852 0 13903 0 14021 45 14059 121 14080 191 14088 69 14096 236 14177 146 14367 0 14421 0 14454 0 14621 72 14661 137 14665 214 14667 0 14677 0 14749 89 14758 39 14782 0 14813 51 14821 56 14872 60 14902 0 14938 0 14968 0 15023 0 15084 0 15114 0 15221 0 15245 0 15269 0 15304 0 15327 0 15366 0 15464 0 15515 0 15576 0 15591 7 15657 0 15773 0 15812 0 15927 0 16161 0 16184 0 16273 0 16433 0 16520 0 16535 0 16558 0 16683 0 16794 0 16851 0 16872 0 16926 0 17015 0 17176 0 17190 0 17205 0 17247 0 17313 0 17333 0 17439 0 17476 76 17483 0 17586 0 17862 0 17981 0 18010 0 18123 0 18140 0 18161 0 18215 0 18454 0 18488 0 18527 0 18666 0 18693 0 18725 0 18907 0 19038 8 19043 0 19081 0 19100 48 19107 0 19134 0 19138 38 19151 0 19179 0 19194 0 19226 0 19239 0 19259 0 19310 0 19453 0 19461 0 19582 0 19667 0 19693 3 19760 0 19771 0 19829 0 19838 0 19914 0 19935 0 19951 0 19963 0 19973 0 19984 0 20002 0 20037 0 20044 0 20092 0 20178 0 20211 0 20234 131 20266 0 20278 0 20345 0 20349 0 20376 0 20456 0 20497 23 20547 119 20650 0 20671 0 20680 0 20712 0 20756 0 20787 0 20859 0 20883 79 21041 0 21204 0 21210 16 21266 0 21359 0 21414 0 21477 0 21481 36 21548 0 21608 0 21777 0 22070 0 22092 0 22118 20 22144 53 22187 0 22195 0 22199 16 22202 46 22279 0 22314 0 22338 0 22454 8 22460 0 22578 0 22590 0 22625 0 22817 0 22836 0 22887 0 22932 0 23083 0 23099 0 23125 0 23153 0 23205 1 23330 0 23361 30 23381 8 23394 297 23413 26 23442 243 23512 0 23550 0 23582 293 23640 30 23663 0 23681 0 23723 214 23807 98 23856 5 23933 0 23947 0 24102 0 24136 0 24159 0 24174 0 24183 0 24207 0 24231 0 24237 0 24261 0 24282 0 24309 0 24318 0 24336 0 24351 0 24372 0 24384 0 24402 0 24447 0 24483 0 24492 0 24501 0 24534 0 24552 0 24564 0 24579 0 24621 0 24633 0 24657 0 24678 0 24696 0 24714 0 24732 0 24750 0 24768 0 24801 0 24819 0 24840 0 24909 0 24921 0 24924 0 24960 0 24986 9 25069 0 25099 0 25143 1 25168 25 25170 43 25252 23 25260 43 25438 110 25505 0 25528 96 25613 0 25616 381 25624 111 25730 557 25796 5 25832 0 25844 0 25906 0 25914 123 25960 11 25967 2 26040 214 26067 0 26141 921 26175 71 26183 66 26193 197 26197 238 26261 0 26280 99 26290 0 26300 237 26377 120 26417 0 26622 95 26742 0 26780 3 26831 1 26838 0 26860 190 26873 0 26932 303 27213 279 27245 62 27252 6 27299 26 27354 42 27367 10 27399 0 27410 321 27470 0 27482 0 27484 0 27518 0 27526 0 27528 0 27530 0 27534 0 27558 0 27566 0 27569 0 27578 0 27683 0 27703 0 27784 0 27906 0 27925 0 27994 0 28003 0 28005 0 28145 0 28208 0 28232 0 28263 0 28368 166 28455 36 28512 185 28661 12 28670 9 28679 10 28687 0 28705 284 28803 0 28914 16 28974 0 29010 76 29205 6 29270 133 29354 1 29403 18 29457 34 29516 0 29567 0 29587 0 29605 1 29620 0 29659 53 29667 307 29671 197 29776 66 29892 0 29920 18 29923 16 30009 0 30119 0 30195 0 30271 170 30449 181 30479 6 30679 92 30911 0 30968 21 31004 0 31066 126 31075 40 31149 48 31153 170 31223 30 31261 0 31323 0 31381 0 31410 0 31589 5 31597 0 31684 0 31701 0 31810 0 31825 67 31967 0 31978 25 32045 1 32051 0 32134 9 32163 28 32197 21 32253 0 32403 0 32434 31 32493 79 32518 0 32673 25 32755 0 32777 79 32886 115 32910 67 32995 0 33023 0 33045 0 33058 269 33113 0 33152 0 33217 877 33355 0 33359 24 33449 0 33490 0 33533 0 33560 0 33650 0 33797 40 33805 0 33857 0 33861 96 33863 27 33901 0 33907 0 33927 0 33933 0 33942 0 34010 0 34028 0 34158 0 34163 0 34182 0 34207 0 34241 0 34313 1 34364 106 34367 59 34401 3 34418 105 34420 0 34504 0 34590 18 34679 204 34688 63 34743 0 34849 0 34874 99 34893 0 34937 6 34999 18 35021 0 35075 0 35079 0 35117 0 35119 0 35135 0 35160 0 35182 0 35203 0 35206 0 35213 0 35250 0 35261 149 35293 0 35304 0 35326 0 35343 0 35353 0 35388 0 35409 0 35422 0 35453 0 35480 0 35489 0 35570 0 35630 0 35703 178 35750 0 35781 3 35873 95 35910 160 36029 98 36191 177 36326 262 36356 104 36368 29 36428 11 36455 601 36515 33 36519 226 36606 0 36677 68 36734 16 36802 121 37093 69 37125 9 37184 0 37214 66 37224 0 37353 63 37361 341 37404 0 37512 0 37626 147 37666 69 37674 0 37752 0 37775 163 37784 208 37829 8 37944 32 37977 0 38003 103 38047 0 38065 39 38096 12 38133 87 38249 20 38363 0 38444 210 38517 285 38588 0 38846 107 38902 0 39125 23 39290 138 39312 171 39343 648 39845 376 39873 147 39878 5 39937 0 39941 0 39967 283 40011 0 40025 638 40141 37 40156 107 40200 0 40238 94 40326 0 40392 83 40474 196 40496 83 40543 0 40585 0 40849 0 40876 0 40930 10 40961 0 41179 0 41242 158 41248 188 41374 375 41427 68 41496 140 41593 0 41632 82 41718 71 41727 0 41910 134 41915 168 41986 2 42060 0 42083 0 42208 41 42276 377 42362 149 42434 0 42473 0 42493 0 42644 0 42713 80 42806 0 42852 6 42854 7 42881 58 43245 0 43421 88 43515 11 43547 330 43549 140 43634 0 43640 0 43642 0 43660 0 43698 0 43796 0 43838 0 43856 0 43865 0 43885 0 43902 0 43937 0 43944 0 43966 0 44069 0 44094 0 44100 0 44102 0 44145 0 44249 0 44261 0 44298 0 44302 0 44408 0 44600 0 44684 0 44720 0 44798 0 44849 0 44864 0 44869 0 44937 0 44952 0 44968 0 44984 0 44986 0 45017 0 45140 0 45167 0 45239 0 45315 0 45353 0 45401 0 45413 0 45464 0 45524 0 45563 0 45590 0 45623 0 45647 0 45649 0 45659 0 45665 0 45686 0 45731 0 45784 0 45804 0 45830 0 45841 0 45854 0 45920 0 46009 0 46014 0 46072 0 46087 0 46100 0 46164 0 46192 0 46271 0 46295 0 46320 0 46432 0 46469 7 46503 0 46515 0 46525 0 46532 0 46568 0 46576 0 46779 0 46959 0 47084 0 47097 0 47119 36 47220 16 47224 0 47301 0 47316 0 47363 0 47367 0 47391 0 47459 0 47577 4 47610 146 47682 0 47706 0 47907 0 48038 3 48079 0 48087 0 48104 182 48108 58 48203 0 48282 47 48388 108 48446 187 48450 78 48466 30 48481 9 48489 43 48514 512 48648 0 48654 172 48663 22 48691 0 48730 0 48765 0 48782 0 48870 54 48895 105 48954 18 48983 29 48991 0 49038 0 49290 73 49388 12 49553 0 49616 60 49656 56 49750 156 49934 253 49951 0 49973 0 50022 0 50097 0 50214 0 50265 0 50552 0 50641 0 50655 0 50691 0 50778 0 50781 0 50803 0 50955 0 50987 0 51012 0 51015 0 51018 0 51104 0 51125 0 51138 0 51146 0 51186 0 51297 0 51453 324 51519 0 51609 0 51611 84 51621 0 51675 0 51745 0 51765 0 51793 0 51804 0 51806 0 51838 0 51880 38 51892 0 51899 0 51907 335 51967 57 52123 201 52127 210 52129 140 52180 151 52189 38 52204 0 52366 163 52524 78 52541 266 52659 257 52706 491 52709 254 52746 0 52774 2 52797 274 52829 101 52837 0 52844 0 52873 9 52918 0 53033 0 53114 113 53152 43 53187 0 53242 32 53488 5 53634 0 53648 0 53702 214 53740 0 53809 0 53888 0 53977 0 53987 5 54091 3 54113 0 54128 0 54146 0 54173 3 54300 0 54560 0 54635 0 54638 0 54703 0 54752 0 54759 2 54869 38 54872 0 55025 0 55058 0 55081 0 55085 0 55104 0 55191 0 55232 0 55251 0 55288 1 55337 0 55354 0 55398 0 55421 0 55523 0 55560 0 55612 3 55642 31 55767 0 55796 0 55835 0 55995 0 56008 48 56011 33 56023 0 56031 0 56044 15 56057 0 56080 0 56131 150 56155 0 56157 0 56164 0 56185 164 56191 110 56207 0 56218 73 56228 0 56354 0 56402 4 56521 0 56539 17 56716 25 56822 0 56842 0 57043 100 57046 350 57050 415 57052 0 57157 65 57183 0 57278 0 57392 0 57510 28 57615 18 57702 0 57734 155 57878 270 57931 0 57956 133 57985 0 58049 55 58105 0 58191 0 58201 0 58247 0 58284 0 58339 0 58369 0 58460 0 58480 1 58522 0 58526 7 58703 0 58759 0 58822 0 58834 0 58919 0 59113 0 59175 0 59215 0 59242 0 59358 0 59374 0 59405 191 59481 5 59489 0 59584 22 59593 13 59641 0 59747 0 59839 0 59865 95 59986 78 60027 0 60071 0 60126 14 60135 87 60152 0 60162 0 60211 0 60236 0 60256 124 60273 53 60290 0 60334 10 60345 0 60357 0 60415 0 60453 0 60538 0 60550 0 60567 0 60591 0 60612 0 60699 0 60747 0 60750 0 60793 0 60819 0 60825 0 60885 0 61004 0 61310 0 61404 0 61434 0 61550 0 61556 0 61628 0 61817 0 61888 0 61989 0 62048 0 62070 0 62116 0 62161 0 62167 0 62197 0 62209 0 62310 0 62313 0 62327 0 62572 0 62733 0 62794 0 62828 0 62974 0 63194 46 63212 0 63241 0 63377 525 63379 179 63431 0 63467 10 63494 8 63501 1 63521 0 63576 273 63626 0 63756 120 63758 3 63788 0 63800 48 63802 121 63825 0 63863 172 63884 81 63887 256 63890 64 63908 0 63918 0 64023 0 64044 0 64073 0 64179 0 64181 0 64306 0 64347 0 64420 0 64440 0 64518 0 64552 0 64572 0 64581 0 64603 0 64688 0 64691 0 64708 0 64716 0 64800 0 64823 0 64914 0 64955 126 64986 49 65109 106 65125 0 65169 66 65226 2 65315 0 65323 0 65434 60 65500 117 65549 73 65551 87 65666 0 65692 205 65715 291 65758 0 65840 26 65933 0 65987 60 66035 187 66061 8 66065 258 66098 21 66233 5 66275 0 66364 0 66386 8 66410 0 66449 54 66511 33 66578 22 66652 0 66659 174 66692 0 66764 0 66787 0 67009 0 67071 162 67127 160 67136 0 67138 0 67156 0 67247 120 67290 0 67299 141 67316 9 67364 11 67898 73 67916 626 67955 0 68150 305 68185 0 68222 0 68237 152 68246 233 68256 171 68276 1 68310 29 68321 132 68360 173 68377 1046 68380 55 68387 17 68407 0 68444 0 68577 0 68594 0 68608 15 68726 0 68733 0 68737 0 68792 206 68861 0 68872 0 68894 103 69044 0 69085 0 69121 0 69170 0 69190 53 69281 132 69301 0 69316 0 69339 41 69367 24 69375 0 69422 0 69444 0 69589 26 69591 52 69625 0 69652 0 69657 129 69661 12 69675 0 69744 5 69792 72 69806 0 69823 0 69850 111 69928 0 69999 0 70021 0 70028 0 70030 204 70099 0 70102 0 70135 0 70177 0 70198 184 70204 37 70206 0 70390 0 70435 0 70453 1 70459 0 70534 21 70542 0 70570 47 70583 0 70699 0 70728 0 70744 170 70821 0 70843 1 70909 4 70933 0 70963 0 70988 0 71098 0 71143 41 71158 1 71266 0 71300 12 71399 2 71519 0 71557 0 71571 20 71588 12 71594 0 71637 120 71679 412 71681 148 71834 42 71922 0 72031 0 72049 0 72076 246 72089 0 72109 0 72121 0 72255 0 72333 0 72356 0 72359 0 72388 0 72506 0 72518 0 72612 0 72636 0 72654 0 72770 0 72826 0 72857 0 72923 0 72989 0 73031 0 73247 0 73349 0 73415 0 73494 0 73549 0 73604 0 73682 0 73799 0 73961 0 73987 0 74045 0 74095 0 74129 0 74177 0 74192 0 74224 0 74281 0 74313 0 74320 0 74342 0 74374 0 74447 0 74483 0 74562 0 74572 0 74578 0 74696 0 74722 0 74749 0 74761 0 74908 0 75047 0 75049 0 75103 0 75128 0 75142 0 75156 0 75189 133 75203 0 75242 0 75244 0 75253 0 75275 0 75286 287 75500 7 75613 737 75615 0 75808 0 75826 0 75862 48 75881 0 75983 11 76069 41 76097 12 76105 0 76198 0 76298 7 76715 0 76727 0 76889 108 77005 0 77055 0 77108 0 77192 0 77289 0 77385 1808 77422 0 77530 1 77641 119 77650 0 77838 0 77925 0 77955 3 78293 0 78364 0 78442 120 78463 19 78478 0 78567 0 78628 87 78662 0 78703 0 78706 0 78721 0 78733 68 78784 298 78921 0 79152 8 79256 71 79325 264 79365 0 79398 218 79427 43 79474 0 79485 0 79724 207 79787 268 79825 253 79894 28 79917 986 80115 0 80143 0 80149 0 80228 0 80352 21 80385 0 80426 0 80521 392 80551 0 80612 145 80787 141 80832 37 81165 38 81179 3 81196 0 81216 448 81220 329 81245 0 81374 110 81396 55 81445 0 81462 0 81552 0 81566 121 81576 0 81610 0 81671 0 81712 200 81715 803 81727 74 81735 19 81896 120 81919 25 81927 75 82004 76 82038 69 82361 59 82417 10 82504 0 82517 112 82585 0 82587 14 82666 200 82686 79 82765 30 82807 0 82826 0 82912 0 82996 87 83114 33 83141 0 83239 0 83326 2 83357 0 83403 93 83409 0 83566 52 83585 0 83738 33 83846 0 83940 0 83946 0 83966 53 83981 301 83992 255 84065 9 84081 169 84173 0 84233 0 84313 0 84353 132 84434 185 84493 310 84508 0 84520 0 84543 8 84559 0 84617 36 84742 0 84811 0 84833 82 84872 352 84918 33 84930 0 84952 68 84956 218 85010 211 85113 0 85135 62 85166 42 85178 134 85223 147 85276 33 85300 0 85575 136 85637 105 85720 0 85873 0 85915 0 85976 24 85986 0 86103 249 86135 4 86272 5 86280 92 86359 14 86378 113 86429 309 86436 20 86448 99 86486 0 86492 0 86509 0 86514 0 86527 0 86613 0 86621 11 86681 0 86698 0 86709 70 86835 0 86924 0 87124 0 87131 18 87276 0 87288 215 87309 0 87343 25 87433 0 87586 0 87605 286 87615 96 87631 121 87774 66 87875 33 87955 349 88015 0 88076 0 88232 544 88280 36 88299 0 88427 0 88439 0 88454 0 88604 14 88631 139 88665 0 88681 306 88732 71 88778 764 88954 63 88963 0 89271 64 89370 0 89383 520 89471 0 89478 0 89516 0 89523 0 89549 0 89593 64 89747 251 89797 183 89817 0 89885 134 89917 82 89982 0 89994 0 90015 0 90101 216 90240 230 90290 111 90321 7 90497 173 90587 0 90607 100 90619 0 90811 13 90935 29 90939 14 91072 4 91165 137 91216 0 91281 0 91291 0 91353 1 91937 0 92035 254 92134 97 92136 0 92155 131 92194 0 92196 181 92269 0 92278 25 92294 103 92334 0 92338 223 92393 0 92407 0 92638 0 92816 150 92857 40 92973 189 93199 0 93294 1 93434 0 93603 0 93773 84 94215 42 94244 0 94256 0 94269 6 94345 0 94428 97 94472 0 94485 11 94538 0 94564 0 94611 0 94776 0 94872 0 95042 0 95410 7 95445 0 95463 0 95549 0 95567 0 95594 0 95611 0 95636 0 95684 0 95727 0 95797 0 95840 0 96143 0 96188 0 96267 0 96319 0 96392 38 96458 2 96513 136 96566 0 96642 88 96647 0 96655 0 96688 0 96718 0 96872 0 96890 0 96912 0 96920 0 96936 0 96974 0 96980 83 97071 29 97102 0 97273 0 97285 0 97330 0 97335 0 97399 0 97470 0 97509 0 97581 75 97592 0 97623 0 97668 32 97688 30 97707 67 97718 0 97788 0 97823 0 97888 46 97893 18 98092 0 98152 96 98260 28 98297 0 98313 75 98330 12 98349 8 98379 0 98396 153 98437 0 98468 225 98552 77 98613 274 98692 0 98709 0 98751 0 98818 28 98836 0 98963 127 99023 3 99137 48 99151 0 99188 4 99322 19 99343 2 99444 24 99546 0 99609 0 99638 0 99732 119 99791 0 99848 41 99940 554 100020 109 100068 0 100176 157 100179 363 100206 94 100256 0 100310 0 100459 0 100505 8 100517 772 100629 55 100805 115 100887 0 100983 33 101082 345 101095 0 101123 147 101166 33 101194 153 101198 36 101246 0 101319 200 101331 0 101409 85 101643 106 101686 19 101697 0 101715 49 101850 126 101864 4 102093 0 102135 0 102231 0 102385 109 102456 40 102531 223 102612 4 102683 33 102809 0 102816 0 102889 0 103041 6 103052 0 103106 0 103214 15 103405 0 103534 44 103630 211 103809 28 103957 21 104034 10 104050 8 104092 42 104113 39 104157 19 104424 87 104464 0 104472 10 104491 141 104562 84 104587 22 104611 49 104806 28 104952 0 105089 4 105096 0 105112 0 105146 0 105177 0 105188 259 105198 113 105208 0 105249 0 105259 126 105288 13 105319 0 105329 137 105331 48 105416 477 105426 71 105507 0 105528 0 105586 0 105603 0 105732 82 105774 0 105808 1 105863 0 105871 0 105877 62 105908 0 105933 0 105939 0 105982 0 106017 0 106032 0 106038 139 106041 15 106050 0 106105 0 106154 0 106323 233 106355 9 106367 0 106483 38 106491 0 106535 31 106601 0 106667 447 106688 0 106742 400 106805 0 106807 41 106829 0 106836 0 106858 83 106906 0 106926 54 106929 0 106941 138 107024 0 107031 72 107033 0 107039 0 107106 302 107226 0 107245 0 107278 0 107288 1 107328 53 107436 0 107452 130 107456 459 107466 0 107553 0 107592 0 107696 0 107717 0 107735 29 107765 0 107795 7 107797 0 107858 88 107927 0 107947 0 108059 0 108129 0 108149 0 108179 0 108197 0 108272 0 108285 0 108344 0 108356 53 108393 0 108565 0 108586 0 108596 0 108692 0 108718 0 108807 0 108850 121 108854 124 108899 0 108952 0 108976 0 109024 0 109032 0 109070 0 109079 0 109104 0 109197 0 109215 0 109226 0