Mercurial > repos > iuc > transit_hmm
diff test-data/tn5gaps-sites1.txt @ 2:32da07a53d3b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
| author | iuc |
|---|---|
| date | Tue, 08 Oct 2019 08:24:28 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tn5gaps-sites1.txt Tue Oct 08 08:24:28 2019 -0400 @@ -0,0 +1,512 @@ +#Tn5 Gaps +#Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit tn5gaps transit-in-tn5_smoll.wig,transit-in2-tn5_smol.wig transit_tn5_smol.prot tn5gaps-sites1_smol.txt +#Data: b'transit-in-tn5_smoll.wig,transit-in2-tn5_smol.wig' +#Annotation path: b'transit_tn5_smol.prot' +#Time: 1.1462020874023438 +#Essential gene count: 1 +#Minimum reads: 1 +#Replicate combination method: Sum +#Minimum significant run length: 216 +#Expected run length: 6.88000 +#Expected max run length: 52.61348258987123 +#Orf Name Desc k n r ovr lenovr pval padj call +BW25113_0001 thrL - 14 63 10 8 8 1.00000 1.00000 Non-essential +BW25113_0002 thrA bifunctional: aspartokinase I (N-terminal)%3B homoserine dehydrogenase I (C-terminal) 356 2460 48 48 48 0.72170 1.00000 Non-essential +BW25113_0003 thrB - 160 930 32 32 32 1.00000 1.00000 Non-essential +BW25113_0004 thrC - 194 1284 54 54 54 0.38483 1.00000 Non-essential +BW25113_0005 yaaX - 48 294 32 32 32 1.00000 1.00000 Non-essential +BW25113_0006 yaaA - 115 774 41 41 41 0.98087 1.00000 Non-essential +BW25113_0007 yaaJ inner membrane transport protein 214 1428 46 46 46 0.82900 1.00000 Non-essential +BW25113_0008 talB - 181 951 54 54 54 0.38483 1.00000 Non-essential +BW25113_0009 mog putative molybdochetalase in molybdopterine biosynthesis 95 585 45 24 24 1.00000 1.00000 Non-essential +BW25113_0010 satP - 108 564 37 37 37 0.99947 1.00000 Non-essential +BW25113_0011 yaaW - 113 711 34 34 34 1.00000 1.00000 Non-essential +BW25113_0013 yaaI - 77 402 26 26 26 1.00000 1.00000 Non-essential +BW25113_0014 dnaK chaperone Hsp70%3B DNA biosynthesis%3B autoregulated heat shock proteins 34 1914 835 216 216 0.00000 0.00000 Essential +BW25113_0015 dnaJ chaperone with DnaK%3B heat shock protein 169 1128 67 67 67 0.05791 1.00000 Non-essential +BW25113_0016 insL1 - 235 1110 36 36 36 0.99986 1.00000 Non-essential +BW25113_0018 mokC regulatory peptide whose translation enables hokC (gef) expression%3B completely contained in another CDS 68 207 12 12 12 1.00000 1.00000 Non-essential +BW25113_0019 nhaA Na+/H antiporter%2C pH dependent 171 1164 36 36 36 0.99986 1.00000 Non-essential +BW25113_0020 nhaR - 116 903 38 38 38 0.99837 1.00000 Non-essential +BW25113_0021 insB1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0022 insA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0023 rpsT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0024 yaaY - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0025 ribF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0026 ileS isoleucine tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0027 lspA prolipoprotein signal peptidase (SPase II) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0028 fkpB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0029 ispH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0030 rihC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0031 dapB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0032 carA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0033 carB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0034 caiF transcriptional regulator of cai operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0035 caiE possible synthesis of cofactor for carnitine racemase and dehydratase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0036 caiD carnitine racemase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0037 caiC probable crotonobetaine/carnitine-CoA ligase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0038 caiB l-carnitine dehydratase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0039 caiA probable carnitine operon oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0040 caiT probable carnitine transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0041 fixA probable flavoprotein subunit%2C carnitine metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0042 fixB probable flavoprotein subunit%2C carnitine metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0043 fixC flavoprotein%3B electron transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0044 fixX putative ferredoxin 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0045 yaaU putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0046 kefF putative NAD(P)H oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0047 kefC K+ efflux antiporter%2C glutathione-regulated 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0048 folA dihydrofolate reductase type I%3B trimethoprim resistance 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0049 apaH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0050 apaG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0051 rsmA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0052 pdxA pyridoxine biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0053 surA survival protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0054 lptD organic solvent tolerance 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0055 djlA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0058 rluA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0059 rapA probable ATP-dependent RNA helicase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0060 polB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0064 araC transcriptional regulator for ara operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0065 yabI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0066 thiQ putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0067 thiP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0068 thiB thiamin-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0069 sgrR putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0070 setA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0071 leuD isopropylmalate isomerase subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0072 leuC 3-isopropylmalate isomerase (dehydratase) subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0073 leuB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0074 leuA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0075 leuL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0076 leuO probable transcriptional activator for leuABCD operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0077 ilvI acetolactate synthase III%2C valine sensitive%2C large subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0078 ilvH acetolactate synthase III%2C valine sensitive%2C small subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0080 cra transcriptional repressor of fru operon and others 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0081 mraZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0082 rsmH putative apolipoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0083 ftsL cell division protein%3B ingrowth of wall at septum 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0084 ftsI septum formation%3B penicillin-binding protein 3%3B peptidoglycan synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0085 murE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0086 murF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0087 mraY phospho-N-acetylmuramoyl-pentapeptide transferase? 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0088 murD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0089 ftsW cell division%3B membrane protein involved in shape determination 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0090 murG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0091 murC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0092 ddlB D-alanine-D-alanine ligase B%2C affects cell division 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0093 ftsQ cell division protein%3B ingrowth of wall at septum 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0094 ftsA ATP-binding cell division protein%2C septation process%2C complexes with FtsZ%2C associated with junctions of inner and outer membranes 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0095 ftsZ cell division%3B forms circumferential ring%3B tubulin-like GTP-binding protein and GTPase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0096 lpxC UDP-3-O-acyl N-acetylglucosamine deacetylase%3B lipid A biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0097 secM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0098 secA preprotein translocase%3B secretion protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0099 mutT 7%2C8-dihydro-8-oxoguanine-triphosphatase%2C prefers dGTP%2C causes AT-GC transversions 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0101 yacG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0102 zapD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0103 coaE putative DNA repair protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0104 guaC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0106 hofC putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0107 hofB putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0108 ppdD prelipin peptidase dependent protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0109 nadC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0110 ampD regulates ampC 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0111 ampE regulates ampC 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0112 aroP aromatic amino acid transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0113 pdhR transcriptional regulator for pyruvate dehydrogenase complex 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0114 aceE pyruvate dehydrogenase (decarboxylase component) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0115 aceF pyruvate dehydrogenase (dihydrolipoyltransacetylase component) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0116 lpd lipoamide dehydrogenase (NADH)%3B component of 2-oxodehydrogenase and pyruvate complexes%3B L-protein of glycine cleavage complex 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0117 yacH putative membrane protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0118 acnB aconitate hydrase B 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0119 yacL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0120 speD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0121 speE spermidine synthase %3D putrescine aminopropyltransferase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0122 yacC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0123 cueO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0124 gcd - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0125 hpt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0126 can putative carbonic anhdrase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0127 yadG putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0128 yadH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0129 yadI putative PTS enzyme II B component 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0130 yadE conserved hypothetical protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0131 panD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0132 yadD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0133 panC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0134 panB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0135 yadC putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0136 yadK putative fimbrial protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0137 yadL putative fimbrial protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0138 yadM putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0139 htrE probable outer membrane porin protein involved in fimbrial assembly 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0140 yadV probable pilin chaperone similar to PapD 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0141 yadN putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0142 folK 7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0143 pcnB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0144 gluQ putative tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0145 dksA dnaK suppressor protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0146 sfsA probable regulator for maltose metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0147 ligT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0148 hrpB helicase%2C ATP-dependent 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0149 mrcB peptidoglycan synthetase%3B penicillin-binding protein 1B 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0150 fhuA outer membrane protein receptor for ferrichrome%2C colicin M%2C and phages T1%2C T5%2C and phi80 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0151 fhuC ATP-binding component of hydroxymate-dependent iron transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0152 fhuD hydroxamate-dependent iron uptake%2C cytoplasmic membrane component%3B periplasmic-binding component of ABC superfamily 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0153 fhuB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0154 hemL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0155 clcA putative channel transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0156 erpA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0157 yadS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0158 btuF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0159 mtn - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0160 dgt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0161 degP periplasmic serine protease Do%3B heat shock protein HtrA 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0162 cdaR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0163 yaeH putative structural protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0164 yaeI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0166 dapD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0167 glnD protein PII%3B uridylyltransferase acts on regulator of glnA 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0168 map - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0169 rpsB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0170 tsf - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0171 pyrH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0172 frr ribosome releasing factor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0173 dxr - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0174 ispU undecaprenyl pyrophosphate synthetase (di-trans%2Cpoly-cis-decaprenylcistransferase) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0175 cdsA CDP-diglyceride synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0176 rseP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0177 bamA putative outer membrane antigen 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0178 skp periplasmic molecular chaperone for outer membrane proteins 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0179 lpxD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0180 fabZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0181 lpxA UDP-N-acetylglucosamine acetyltransferase%3B lipid A biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0182 lpxB tetraacyldisaccharide-1-P%3B lipid A biosynthesis%2C penultimate step 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0183 rnhB RNAse HII%2C degrades RNA of DNA-RNA hybrids 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0184 dnaE DNA polymerase III%2C alpha subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0185 accA acetylCoA carboxylase%2C carboxytransferase component%2C alpha subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0186 ldcC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0187 yaeR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0188 tilS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0189 rof - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0190 yaeQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0191 arfB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0192 nlpE copper homeostasis protein (lipoprotein) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0193 yaeF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0194 proS proline tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0195 tsaA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0196 rcsF regulator in colanic acid synthesis%3B interacts with RcsB 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0197 metQ D-methionine transport protein (ABC superfamily%2C peri_bind) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0198 metI D- and L-methionine transport protein (ABC superfamily%2C membrane) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0199 metN D- and L-methionine transport protein (ABC superfamily%2C atp_bind) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0200 gmhB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0201 rrsH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0202 ileV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0203 alaV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0204 rrlH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0205 rrfH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0206 aspU - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0207 dkgB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0208 yafC putative transcriptional regulator LYSR-type 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0209 yafD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0210 yafE putative biotin synthesis protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0211 mltD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0212 gloB probable hydroxyacylglutathione hydrolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0213 yafS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0214 rnhA RNase HI%2C degrades RNA of DNA-RNA hybrids%2C participates in DNA replication 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0215 dnaQ DNA polymerase III%2C epsilon subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0216 aspV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0217 yafT putative aminopeptidase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0219 yafV putative EC 3.5. amidase-type enzyme 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0220 ivy inhibitor of vertebrate C-type lysozyme%2C periplasmic 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0221 fadE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0222 gmhA phosphoheptose isomerase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0223 yafJ putative amidotransferase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0224 yafK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0225 yafQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0226 dinJ damage-inducible protein J 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0227 yafL putative lipoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0228 rayT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0231 dinB DNA polymerase IV%3B DNA polymerase IV%2C devoid of proofreading%2C damage-inducible protein P 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0232 yafN - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0233 yafO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0234 yafP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0237 pepD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0238 gpt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0239 frsA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0240 crl sigma factor-binding protein%2C stimulates RNA polymerase holoenzyme formation%3Bregulator%3B Surface structures%3B transcriptional regulator of cryptic csgA gene for curli surface fibers 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0241 phoE outer membrane pore protein E (E%2CIc%2CNmpAB) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0242 proB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0243 proA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0244 thrW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0245 ykfI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0246 yafW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0247 ykfG putative DNA repair protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0248 yafX - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0249 ykfF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0250 ykfB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0251 yafY hypothetical transcriptional regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0252 yafZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0253 ykfA putative GTP-binding protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0254 perR peroxide resistance protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0256 insI1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0259 insH1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0260 mmuP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0261 mmuM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0262 afuC putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0264 insB1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0265 insA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0267 yagA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0268 yagE putative lyase/synthase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0269 yagF putative dehydratase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0270 yagG putative permease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0271 yagH putative beta-xylosidase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0272 yagI putative regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0273 argF ornithine carbamoyltransferase 2%2C chain F 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0274 insB1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0275 insA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0277 yagK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0278 yagL DNA-binding protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0279 yagM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0280 yagN - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0281 intF putative phage integrase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0283 paoD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0284 paoC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0285 paoB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0286 paoA putative xanthine dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0287 yagU - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0288 ykgJ putative ferredoxin 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0289 ecpE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0290 ecpD putative receptor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0291 ecpC putative enzyme 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0292 ecpB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0293 ecpA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0294 ecpR putative regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0295 ykgL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0296 ykgM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0298 insE1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0299 insF1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0301 rclC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0303 rclB the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene%2C and has been deaccessioned 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0304 rclA putative oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0305 rclR putative ARAC-type regulatory protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0306 ykgE putative dehydrogenase subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0307 ykgF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0308 ykgG putative transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0310 ykgH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0311 betA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0312 betB NAD+-dependent betaine aldehyde dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0313 betI probably transcriptional repressor of bet genes 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0314 betT high-affinity choline transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0315 yahA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0316 yahB putative transcriptional regulator LYSR-type 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0317 yahC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0318 yahD putative transcription factor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0319 yahE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0320 yahF putative oxidoreductase subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0321 yahG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0323 yahI putative kinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0324 yahJ putative deaminase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0325 yahK putative oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0326 yahL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0327 yahM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0328 yahN putative cytochrome subunit of dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0329 yahO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0330 prpR regulator for prp operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0331 prpB putative phosphonomutase 2 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0333 prpC putative citrate synthase%3B propionate metabolism? 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0334 prpD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0335 prpE putative propionyl-CoA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0336 codB cytosine permease/transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0337 codA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0338 cynR cyn operon positive regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0339 cynT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0340 cynS cyanate aminohydrolase%2C cyanase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0341 cynX cyanate transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0342 lacA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0343 lacY galactoside permease (lactose permease%2C M protein) (MFS family) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0345 lacI transcriptional repressor of the lac operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0346 mhpR transcriptional regulator for mhp operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0347 mhpA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0348 mhpB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0350 mhpD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0351 mhpF acetaldehyde dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0352 mhpE 4-hydroxy-2-ketovalerate aldolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0353 mhpT putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0354 yaiL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0355 frmB putative S-formylglutathione hydrolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0356 frmA alcohol dehydrogenase class III%3B formaldehyde dehydrogenase%2C glutathione-dependent 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0357 frmR repressor of frmRAB 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0358 yaiO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0360 insC1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0361 insD1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0363 yaiP polysaccharide metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0364 yaiS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0365 tauA taurine transport system periplasmic protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0366 tauB taurine ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0367 tauC taurine transport system permease protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0368 tauD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0369 hemB 5-aminolevulinate dehydratase %3D porphobilinogen synthase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0372 insF1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0373 insE1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0375 yaiV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0376 ampH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0377 sbmA sensitivity to microcin B17%2C possibly envelop protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0378 yaiW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0379 yaiY - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0380 yaiZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0381 ddlA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0382 iraP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0383 phoA alkaline phosphatase%3B start codon corrected 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0384 psiF induced by phosphate starvation 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0385 yaiC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0386 proC pyrroline-5-carboxylate reductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0387 yaiI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0388 aroL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0389 yaiA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0390 aroM protein of aro operon%2C regulated by aroR 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0391 yaiE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0393 rdgC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0394 mak possible NAGC-like transcriptional regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0396 araJ involved in either transport or processing of arabinose polymers 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0397 sbcC ATP-dependent dsDNA exonuclease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0398 sbcD ATP-dependent dsDNA exonuclease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0399 phoB positive response regulator for pho regulon%2C sensor is PhoR (or CreC) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0400 phoR positive and negative sensor protein for pho regulon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0401 brnQ branched chain amino acid transport system II carrier protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0402 proY proline permease transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0403 malZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0404 acpH putative glycoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0405 queA synthesis of queuine in tRNA%3B probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0406 tgt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0407 yajC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0408 secD protein secretion%3B membrane protein%2C part of the channel 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0409 secF protein secretion%2C membrane protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0410 yajD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0411 tsx nucleoside channel%3B receptor of phage T6 and colicin K 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0412 yajI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0413 nrdR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0414 ribD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0415 ribE riboflavin synthase%2C beta chain 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0416 nusB transcription termination%3B L factor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0417 thiL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0418 pgpA phosphatidylglycerophosphatase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0419 yajO putative NAD(P)H-dependent xylose reductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0420 dxs 1-deoxyxylulose-5-phosphate synthase%3B flavoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0421 ispA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0422 xseB exonuclease VII%2C small subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0423 thiI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0424 yajL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0425 panE 2-dehydropantoate 2-reductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0426 yajQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0427 yajR putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0428 cyoE protoheme IX farnesyltransferase (haeme O biosynthesis) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0429 cyoD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0430 cyoC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0431 cyoB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0432 cyoA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0433 ampG regulates beta-lactamase synthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0434 yajG putative polymerase/proteinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0435 bolA possible regulator of murein genes 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0436 tig trigger factor%3B a molecular chaperone involved in cell division 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0437 clpP ATP-dependent proteolytic subunit of clpA-clpP serine protease%2C heat shock protein F21.5 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0438 clpX ATP-dependent specificity component of clpP serine protease%2C chaperone 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0439 lon DNA-binding%2C ATP-dependent protease La%3B heat shock K-protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0440 hupB DNA-binding protein HU-beta%2C NS1 (HU-1) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0441 ppiD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0442 ybaV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0443 fadM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0444 queC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0445 ybaE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0446 cof - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0447 ybaO putative LRP-like transcriptional regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0448 mdlA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0449 mdlB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0450 glnK nitrogen regulatory protein P-II 2 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0451 amtB probable ammonium transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0452 tesB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0453 ybaY glycoprotein/polysaccharide metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0454 ybaZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0455 ffs - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0456 ybaA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0457 ylaB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0458 ylaC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0459 maa - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0460 hha haemolysin expression modulating protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0461 tomB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0462 acrB acridine efflux pump 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0463 acrA acridine efflux pump 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0464 acrR acrAB operon repressor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0465 mscK mechanosensitive channel protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0466 ybaM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0467 priC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0468 ybaN putative gene 58 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0469 apt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0470 dnaX DNA polymerase III%2C tau and gamma subunits%3B DNA elongation factor III 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0471 ybaB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0472 recR recombination and repair 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0473 htpG chaperone Hsp90%2C heat shock protein C 62.5 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0474 adk adenylate kinase activity%3B pleiotropic effects on glycerol-3-phosphate acyltransferase activity 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0475 hemH ferrochelatase: final enzyme of heme biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0476 aes - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0477 gsk inosine-guanosine kinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0478 ybaL putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0479 fsr fosmidomycin resistance protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0480 ushA UDP-sugar hydrolase (5'-nucleotidase) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0481 ybaK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0482 ybaP putative ligase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0483 ybaQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0484 copA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0485 glsA putative glutaminase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0486 ybaT putative amino acid/amine transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0487 cueR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0488 ybbJ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0489 qmcA putative protease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0490 fetA putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0491 fetB putative metal resistance protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0492 ybbN putative thioredoxin-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0493 ybbO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0494 tesA acyl-CoA thioesterase I%3B also functions as protease I 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0495 ybbA putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0496 ybbP putative oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0497 rhsD rhsD protein in rhs element 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0498 ybbC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0503 mnmH putative capsule anchoring protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0504 allS putative transcriptional regulator LYSR-type 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0505 allA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0506 allR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0507 gcl - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0508 hyi - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0509 glxR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0511 ybbW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0512 allB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0513 ybbY - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0514 glxK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0515 allE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0516 allC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0517 allD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0518 fdrA involved in protein transport%3B multicopy suppressor of dominant negative ftsH mutants 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0520 ylbF putative carboxylase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0521 ybcF putative carbamate kinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0522 purK phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C CO(2)-fixing subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0523 purE phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C catalytic subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0524 lpxH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0525 ppiB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0526 cysS cysteine tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0527 ybcI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0528 ybcJ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0529 folD 5%2C10-methylene-tetrahydrofolate dehydrogenase%3B 5%2C10-methylene-tetrahydrofolate cyclohydrolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0530 sfmA putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0531 sfmC putative chaperone 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4406 yaeP conserved hypothetical protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4412 hokC small toxic membrane polypeptide%3B completely contained in another CDS 36 150 12 12 12 1.00000 1.00000 Non-essential +BW25113_4413 sokC - 20 52 12 12 12 1.00000 1.00000 Non-essential +BW25113_4414 tff - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4504 ykfH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4506 ykgO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4572 ylbE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4577 sgrS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4585 chiX - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4586 ykfM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4662 sgrT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4671 ykgR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4690 eyeA - 0 0 0 0 0 1.00000 1.00000 Non-essential