Mercurial > repos > iuc > transit_hmm
diff test-data/transit_tn5.prot @ 2:32da07a53d3b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
| author | iuc |
|---|---|
| date | Tue, 08 Oct 2019 08:24:28 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit_tn5.prot Tue Oct 08 08:24:28 2019 -0400 @@ -0,0 +1,500 @@ +- 190 255 + 21 - - thrL BW25113_0001 - +bifunctional: aspartokinase I (N-terminal)%3B homoserine dehydrogenase I (C-terminal) 337 2799 + 820 - - thrA BW25113_0002 - +- 2801 3733 + 310 - - thrB BW25113_0003 - +- 3734 5020 + 428 - - thrC BW25113_0004 - +- 5234 5530 + 98 - - yaaX BW25113_0005 - +- 5683 6459 - 258 - - yaaA BW25113_0006 - +inner membrane transport protein 6529 7959 - 476 - - yaaJ BW25113_0007 - +- 8238 9191 + 317 - - talB BW25113_0008 - +putative molybdochetalase in molybdopterine biosynthesis 9306 9893 + 195 - - mog BW25113_0009 - +- 9928 10494 - 188 - - satP BW25113_0010 - +- 10643 11356 - 237 - - yaaW BW25113_0011 - +- 11382 11786 - 134 - - yaaI BW25113_0013 - +chaperone Hsp70%3B DNA biosynthesis%3B autoregulated heat shock proteins 12163 14079 + 638 - - dnaK BW25113_0014 - +chaperone with DnaK%3B heat shock protein 14168 15298 + 376 - - dnaJ BW25113_0015 - +- 15445 16557 + 370 - - insL1 BW25113_0016 - +regulatory peptide whose translation enables hokC (gef) expression%3B completely contained in another CDS 16751 16960 - 69 - - mokC BW25113_0018 - +small toxic membrane polypeptide%3B completely contained in another CDS 16751 16903 - 50 - - hokC BW25113_4412 - +- 16952 17006 + 18 - - sokC BW25113_4413 - +Na+/H antiporter%2C pH dependent 17489 18655 + 388 - - nhaA BW25113_0019 - +- 18715 19620 + 301 - - nhaR BW25113_0020 - +- 19811 20314 - 167 - - insB1 BW25113_0021 - +- 20233 20508 - 91 - - insA BW25113_0022 - +- 20815 21078 - 87 - - rpsT BW25113_0023 - +- 21181 21399 + 72 - - yaaY BW25113_0024 - +- 21407 22348 + 313 - - ribF BW25113_0025 - +isoleucine tRNA synthetase 22391 25207 + 938 - - ileS BW25113_0026 - +prolipoprotein signal peptidase (SPase II) 25207 25701 + 164 - - lspA BW25113_0027 - +- 25826 26275 + 149 - - fkpB BW25113_0028 - +- 26277 27227 + 316 - - ispH BW25113_0029 - +- 27293 28207 + 304 - - rihC BW25113_0030 - +- 28374 29195 + 273 - - dapB BW25113_0031 - +- 29651 30799 + 382 - - carA BW25113_0032 - +- 30817 34038 + 1073 - - carB BW25113_0033 - +transcriptional regulator of cai operon 34300 34695 + 131 - - caiF BW25113_0034 - +possible synthesis of cofactor for carnitine racemase and dehydratase 34781 35371 - 196 - - caiE BW25113_0035 - +carnitine racemase 35377 36162 - 261 - - caiD BW25113_0036 - +probable crotonobetaine/carnitine-CoA ligase 36271 37824 - 517 - - caiC BW25113_0037 - +l-carnitine dehydratase 37898 39115 - 405 - - caiB BW25113_0038 - +probable carnitine operon oxidoreductase 39244 40386 - 380 - - caiA BW25113_0039 - +probable carnitine transporter 40417 41931 - 504 - - caiT BW25113_0040 - +probable flavoprotein subunit%2C carnitine metabolism 42403 43173 + 256 - - fixA BW25113_0041 - +probable flavoprotein subunit%2C carnitine metabolism 43188 44129 + 313 - - fixB BW25113_0042 - +flavoprotein%3B electron transport 44180 45466 + 428 - - fixC BW25113_0043 - +putative ferredoxin 45463 45750 + 95 - - fixX BW25113_0044 - +putative transport protein 45807 47138 + 443 - - yaaU BW25113_0045 - +putative NAD(P)H oxidoreductase 47246 47776 + 176 - - kefF BW25113_0046 - +K+ efflux antiporter%2C glutathione-regulated 47769 49631 + 620 - - kefC BW25113_0047 - +dihydrofolate reductase type I%3B trimethoprim resistance 49823 50302 + 159 - - folA BW25113_0048 - +- 50380 51222 - 280 - - apaH BW25113_0049 - +- 51229 51606 - 125 - - apaG BW25113_0050 - +- 51609 52430 - 273 - - rsmA BW25113_0051 - +pyridoxine biosynthesis 52427 53416 - 329 - - pdxA BW25113_0052 - +survival protein 53416 54702 - 428 - - surA BW25113_0053 - +organic solvent tolerance 54755 57109 - 784 - - lptD BW25113_0054 - +- 57364 58179 + 271 - - djlA BW25113_0055 - +- 59687 60346 - 219 - - rluA BW25113_0058 - +probable ATP-dependent RNA helicase 60358 63264 - 968 - - rapA BW25113_0059 - +- 63429 65780 - 783 - - polB BW25113_0060 - +transcriptional regulator for ara operon 66874 67752 + 292 - - araC BW25113_0064 - +- 67838 68602 + 254 - - yabI BW25113_0065 - +putative ATP-binding component of a transport system 68716 69414 - 232 - - thiQ BW25113_0066 - +- 69398 71008 - 536 - - thiP BW25113_0067 - +thiamin-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily 70984 71967 - 327 - - thiB BW25113_0068 - +putative transport protein 72131 73786 - 551 - - sgrR BW25113_0069 - +- 73854 74080 + 75 - - sgrS BW25113_4577 - +- 73875 74006 + 43 - - sgrT BW25113_4662 - +- 74108 75286 + 392 - - setA BW25113_0070 - +isopropylmalate isomerase subunit 75335 75940 - 201 - - leuD BW25113_0071 - +3-isopropylmalate isomerase (dehydratase) subunit 75951 77351 - 466 - - leuC BW25113_0072 - +- 77354 78445 - 363 - - leuB BW25113_0073 - +- 78445 80016 - 523 - - leuA BW25113_0074 - +- 80109 80195 - 28 - - leuL BW25113_0075 - +probable transcriptional activator for leuABCD operon 80855 81799 + 314 - - leuO BW25113_0076 - +acetolactate synthase III%2C valine sensitive%2C large subunit 82117 83841 + 574 - - ilvI BW25113_0077 - +acetolactate synthase III%2C valine sensitive%2C small subunit 83844 84335 + 163 - - ilvH BW25113_0078 - +transcriptional repressor of fru operon and others 84515 85519 + 334 - - cra BW25113_0080 - +- 86121 86579 + 152 - - mraZ BW25113_0081 - +putative apolipoprotein 86581 87522 + 313 - - rsmH BW25113_0082 - +cell division protein%3B ingrowth of wall at septum 87519 87884 + 121 - - ftsL BW25113_0083 - +septum formation%3B penicillin-binding protein 3%3B peptidoglycan synthetase 87900 89666 + 588 - - ftsI BW25113_0084 - +- 89653 91140 + 495 - - murE BW25113_0085 - +- 91137 92495 + 452 - - murF BW25113_0086 - +phospho-N-acetylmuramoyl-pentapeptide transferase? 92489 93571 + 360 - - mraY BW25113_0087 - +- 93574 94890 + 438 - - murD BW25113_0088 - +cell division%3B membrane protein involved in shape determination 94890 96134 + 414 - - ftsW BW25113_0089 - +- 96131 97198 + 355 - - murG BW25113_0090 - +- 97252 98727 + 491 - - murC BW25113_0091 - +D-alanine-D-alanine ligase B%2C affects cell division 98720 99640 + 306 - - ddlB BW25113_0092 - +cell division protein%3B ingrowth of wall at septum 99642 100472 + 276 - - ftsQ BW25113_0093 - +ATP-binding cell division protein%2C septation process%2C complexes with FtsZ%2C associated with junctions of inner and outer membranes 100469 101731 + 420 - - ftsA BW25113_0094 - +cell division%3B forms circumferential ring%3B tubulin-like GTP-binding protein and GTPase 101792 102943 + 383 - - ftsZ BW25113_0095 - +UDP-3-O-acyl N-acetylglucosamine deacetylase%3B lipid A biosynthesis 103044 103961 + 305 - - lpxC BW25113_0096 - +- 104192 104704 + 170 - - secM BW25113_0097 - +preprotein translocase%3B secretion protein 104766 107471 + 901 - - secA BW25113_0098 - +7%2C8-dihydro-8-oxoguanine-triphosphatase%2C prefers dGTP%2C causes AT-GC transversions 107531 107920 + 129 - - mutT BW25113_0099 - +- 108136 108333 - 65 - - yacG BW25113_0101 - +- 108343 109086 - 247 - - zapD BW25113_0102 - +putative DNA repair protein 109086 109706 - 206 - - coaE BW25113_0103 - +- 109931 110974 + 347 - - guaC BW25113_0104 - +putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 111009 112211 - 400 - - hofC BW25113_0106 - +putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 112201 113586 - 461 - - hofB BW25113_0107 - +prelipin peptidase dependent protein 113596 114036 - 146 - - ppdD BW25113_0108 - +- 114239 115132 - 297 - - nadC BW25113_0109 - +regulates ampC 115220 115771 + 183 - - ampD BW25113_0110 - +regulates ampC 115768 116622 + 284 - - ampE BW25113_0111 - +aromatic amino acid transport protein 116665 118038 - 457 - - aroP BW25113_0112 - +transcriptional regulator for pyruvate dehydrogenase complex 118579 119343 + 254 - - pdhR BW25113_0113 - +pyruvate dehydrogenase (decarboxylase component) 119504 122167 + 887 - - aceE BW25113_0114 - +pyruvate dehydrogenase (dihydrolipoyltransacetylase component) 122182 124074 + 630 - - aceF BW25113_0115 - +lipoamide dehydrogenase (NADH)%3B component of 2-oxodehydrogenase and pyruvate complexes%3B L-protein of glycine cleavage complex 124399 125823 + 474 - - lpd BW25113_0116 - +putative membrane protein 125894 127747 - 617 - - yacH BW25113_0117 - +aconitate hydrase B 128102 130699 + 865 - - acnB BW25113_0118 - +- 130875 131237 + 120 - - yacL BW25113_0119 - +- 131275 132069 - 264 - - speD BW25113_0120 - +spermidine synthase %3D putrescine aminopropyltransferase 132085 132951 - 288 - - speE BW25113_0121 - +- 133057 133404 - 115 - - yacC BW25113_0122 - +- 133570 135120 + 516 - - cueO BW25113_0123 - +- 135322 137712 - 796 - - gcd BW25113_0124 - +- 137918 138454 + 178 - - hpt BW25113_0125 - +putative carbonic anhdrase 138495 139157 - 220 - - can BW25113_0126 - +putative ATP-binding component of a transport system 139266 140192 + 308 - - yadG BW25113_0127 - +- 140189 140959 + 256 - - yadH BW25113_0128 - +putative PTS enzyme II B component 141064 141504 + 146 - - yadI BW25113_0129 - +conserved hypothetical protein 141568 142797 + 409 - - yadE BW25113_0130 - +- 142801 143181 - 126 - - panD BW25113_0131 - +- 143455 144357 + 300 - - yadD BW25113_0132 - +- 144431 145282 - 283 - - panC BW25113_0133 - +- 145294 146088 - 264 - - panB BW25113_0134 - +putative fimbrial-like protein 146202 147440 - 412 - - yadC BW25113_0135 - +putative fimbrial protein 147490 148086 - 198 - - yadK BW25113_0136 - +putative fimbrial protein 148113 148718 - 201 - - yadL BW25113_0137 - +putative fimbrial-like protein 148730 149299 - 189 - - yadM BW25113_0138 - +probable outer membrane porin protein involved in fimbrial assembly 149316 151913 - 865 - - htrE BW25113_0139 - +probable pilin chaperone similar to PapD 151948 152688 - 246 - - yadV BW25113_0140 - +putative fimbrial-like protein 152786 153370 - 194 - - yadN BW25113_0141 - +7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase 153740 154219 - 159 - - folK BW25113_0142 - +- 154216 155613 - 465 - - pcnB BW25113_0143 - +putative tRNA synthetase 155673 156599 - 308 - - gluQ BW25113_0144 - +dnaK suppressor protein 156636 157091 - 151 - - dksA BW25113_0145 - +probable regulator for maltose metabolism 157269 157973 - 234 - - sfsA BW25113_0146 - +- 157988 158518 - 176 - - ligT BW25113_0147 - +helicase%2C ATP-dependent 158592 161021 + 809 - - hrpB BW25113_0148 - +peptidoglycan synthetase%3B penicillin-binding protein 1B 161217 163751 + 844 - - mrcB BW25113_0149 - +outer membrane protein receptor for ferrichrome%2C colicin M%2C and phages T1%2C T5%2C and phi80 163971 166214 + 747 - - fhuA BW25113_0150 - +ATP-binding component of hydroxymate-dependent iron transport 166265 167062 + 265 - - fhuC BW25113_0151 - +hydroxamate-dependent iron uptake%2C cytoplasmic membrane component%3B periplasmic-binding component of ABC superfamily 167062 167952 + 296 - - fhuD BW25113_0152 - +- 167949 169931 + 660 - - fhuB BW25113_0153 - +- 170089 171369 - 426 - - hemL BW25113_0154 - +putative channel transporter 171594 173015 + 473 - - clcA BW25113_0155 - +- 173097 173441 + 114 - - erpA BW25113_0156 - +- 173488 174111 - 207 - - yadS BW25113_0157 - +- 174149 174949 - 266 - - btuF BW25113_0158 - +- 174942 175640 - 232 - - mtn BW25113_0159 - +- 175724 177241 + 505 - - dgt BW25113_0160 - +periplasmic serine protease Do%3B heat shock protein HtrA 177371 178795 + 474 - - degP BW25113_0161 - +- 178950 180107 + 385 - - cdaR BW25113_0162 - +putative structural protein 180196 180582 - 128 - - yaeH BW25113_0163 - +- 180744 181556 - 270 - - yaeI BW25113_0164 - +- 181610 182434 - 274 - - dapD BW25113_0166 - +protein PII%3B uridylyltransferase acts on regulator of glnA 182465 185137 - 890 - - glnD BW25113_0167 - +- 185199 185993 - 264 - - map BW25113_0168 - +- 186199 186334 + 45 - - tff BW25113_4414 - +- 186361 187086 + 241 - - rpsB BW25113_0169 - +- 187344 188195 + 283 - - tsf BW25113_0170 - +- 188342 189067 + 241 - - pyrH BW25113_0171 - +ribosome releasing factor 189359 189916 + 185 - - frr BW25113_0172 - +- 190008 191204 + 398 - - dxr BW25113_0173 - +undecaprenyl pyrophosphate synthetase (di-trans%2Cpoly-cis-decaprenylcistransferase) 191390 192151 + 253 - - ispU BW25113_0174 - +CDP-diglyceride synthetase 192164 193021 + 285 - - cdsA BW25113_0175 - +- 193033 194385 + 450 - - rseP BW25113_0176 - +putative outer membrane antigen 194415 196847 + 810 - - bamA BW25113_0177 - +periplasmic molecular chaperone for outer membrane proteins 196969 197454 + 161 - - skp BW25113_0178 - +- 197458 198483 + 341 - - lpxD BW25113_0179 - +- 198588 199043 + 151 - - fabZ BW25113_0180 - +UDP-N-acetylglucosamine acetyltransferase%3B lipid A biosynthesis 199047 199835 + 262 - - lpxA BW25113_0181 - +tetraacyldisaccharide-1-P%3B lipid A biosynthesis%2C penultimate step 199835 200983 + 382 - - lpxB BW25113_0182 - +RNAse HII%2C degrades RNA of DNA-RNA hybrids 200980 201576 + 198 - - rnhB BW25113_0183 - +DNA polymerase III%2C alpha subunit 201613 205095 + 1160 - - dnaE BW25113_0184 - +acetylCoA carboxylase%2C carboxytransferase component%2C alpha subunit 205108 206067 + 319 - - accA BW25113_0185 - +- 206166 208307 + 713 - - ldcC BW25113_0186 - +- 208364 208753 + 129 - - yaeR BW25113_0187 - +- 208818 210116 + 432 - - tilS BW25113_0188 - +- 210165 210419 - 84 - - rof BW25113_0189 - +conserved hypothetical protein 210412 210612 - 66 - - yaeP BW25113_4406 - +- 210778 211323 + 181 - - yaeQ BW25113_0190 - +- 211320 211742 + 140 - - arfB BW25113_0191 - +copper homeostasis protein (lipoprotein) 211756 212466 + 236 - - nlpE BW25113_0192 - +- 212666 213490 - 274 - - yaeF BW25113_0193 - +proline tRNA synthetase 213544 215262 - 572 - - proS BW25113_0194 - +- 215374 216081 - 235 - - tsaA BW25113_0195 - +regulator in colanic acid synthesis%3B interacts with RcsB 216078 216482 - 134 - - rcsF BW25113_0196 - +D-methionine transport protein (ABC superfamily%2C peri_bind) 216600 217415 - 271 - - metQ BW25113_0197 - +D- and L-methionine transport protein (ABC superfamily%2C membrane) 217455 218108 - 217 - - metI BW25113_0198 - +D- and L-methionine transport protein (ABC superfamily%2C atp_bind) 218101 219132 - 343 - - metN BW25113_0199 - +- 219320 219895 + 191 - - gmhB BW25113_0200 - +- 220258 221799 + 513 - - rrsH BW25113_0201 - +- 221868 221944 + 25 - - ileV BW25113_0202 - +- 221987 222062 + 25 - - alaV BW25113_0203 - +- 222246 225149 + 967 - - rrlH BW25113_0204 - +- 225243 225362 + 39 - - rrfH BW25113_0205 - +- 225415 225491 + 25 - - aspU BW25113_0206 - +- 225654 226457 + 267 - - dkgB BW25113_0207 - +putative transcriptional regulator LYSR-type 226454 227368 - 304 - - yafC BW25113_0208 - +- 227609 228409 + 266 - - yafD BW25113_0209 - +putative biotin synthesis protein 228413 229036 + 207 - - yafE BW25113_0210 - +- 229084 230442 - 452 - - mltD BW25113_0211 - +probable hydroxyacylglutathione hydrolase 230514 231269 - 251 - - gloB BW25113_0212 - +- 231303 232025 + 240 - - yafS BW25113_0213 - +RNase HI%2C degrades RNA of DNA-RNA hybrids%2C participates in DNA replication 232022 232489 - 155 - - rnhA BW25113_0214 - +DNA polymerase III%2C epsilon subunit 232554 233285 + 243 - - dnaQ BW25113_0215 - +- 233418 233494 + 25 - - aspV BW25113_0216 - +putative aminopeptidase 233822 234607 + 261 - - yafT BW25113_0217 - +- 234744 235223 - 159 - - ykfM BW25113_4586 - +putative EC 3.5. amidase-type enzyme 235906 236676 - 256 - - yafV BW25113_0219 - +inhibitor of vertebrate C-type lysozyme%2C periplasmic 236830 237303 + 157 - - ivy BW25113_0220 - +- 237346 239790 - 814 - - fadE BW25113_0221 - +phosphoheptose isomerase 240030 240608 + 192 - - gmhA BW25113_0222 - +putative amidotransferase 240814 241581 + 255 - - yafJ BW25113_0223 - +- 241552 242292 - 246 - - yafK BW25113_0224 - +- 242448 242726 - 92 - - yafQ BW25113_0225 - +damage-inducible protein J 242729 242989 - 86 - - dinJ BW25113_0226 - +putative lipoprotein 243199 243948 + 249 - - yafL BW25113_0227 - +- 244124 244621 + 165 - - rayT BW25113_0228 - +DNA polymerase IV%3B DNA polymerase IV%2C devoid of proofreading%2C damage-inducible protein P 247385 248440 + 351 - - dinB BW25113_0231 - +- 248492 248785 + 97 - - yafN BW25113_0232 - +- 248788 249186 + 132 - - yafO BW25113_0233 - +- 249196 249648 + 150 - - yafP BW25113_0234 - +- 250746 252203 - 485 - - pepD BW25113_0237 - +- 252464 252922 + 152 - - gpt BW25113_0238 - +- 253014 254258 + 414 - - frsA BW25113_0239 - +sigma factor-binding protein%2C stimulates RNA polymerase holoenzyme formation%3Bregulator%3B Surface structures%3B transcriptional regulator of cryptic csgA gene for curli surface fibers 254316 254717 + 133 - - crl BW25113_0240 - +outer membrane pore protein E (E%2CIc%2CNmpAB) 254756 255811 - 351 - - phoE BW25113_0241 - +- 256099 257202 + 367 - - proB BW25113_0242 - +- 257214 258467 + 417 - - proA BW25113_0243 - +- 258582 258657 + 25 - - thrW BW25113_0244 - +- 259039 259380 - 113 - - ykfI BW25113_0245 - +- 259401 259718 - 105 - - yafW BW25113_0246 - +- 259737 259958 - 73 - - ykfH BW25113_4504 - +putative DNA repair protein 259967 260443 - 158 - - ykfG BW25113_0247 - +- 260459 260917 - 152 - - yafX BW25113_0248 - +- 261015 261254 - 79 - - ykfF BW25113_0249 - +- 261331 261798 - 155 - - ykfB BW25113_0250 - +hypothetical transcriptional regulator 261821 262264 - 147 - - yafY BW25113_0251 - +- 262895 263716 - 273 - - yafZ BW25113_0252 - +putative GTP-binding protein 263808 264671 - 287 - - ykfA BW25113_0253 - +peroxide resistance protein 265000 265893 - 297 - - perR BW25113_0254 - +- 266314 267465 + 383 - - insI1 BW25113_0256 - +- 268291 268365 + 24 - - eyeA BW25113_4690 - +- 269812 270828 - 338 - - insH1 BW25113_0259 - +- 271036 272439 + 467 - - mmuP BW25113_0260 - +- 272426 273358 + 310 - - mmuM BW25113_0261 - +putative ATP-binding component of a transport system 273467 274513 - 348 - - afuC BW25113_0262 - +- 274889 275392 - 167 - - insB1 BW25113_0264 - +- 275311 275586 - 91 - - insA BW25113_0265 - +- 276540 277694 - 384 - - yagA BW25113_0267 - +putative lyase/synthase 277989 278897 + 302 - - yagE BW25113_0268 - +putative dehydratase 278912 280879 + 655 - - yagF BW25113_0269 - +putative permease 281106 282488 + 460 - - yagG BW25113_0270 - +putative beta-xylosidase 282500 284110 + 536 - - yagH BW25113_0271 - +putative regulator 284115 284873 - 252 - - yagI BW25113_0272 - +ornithine carbamoyltransferase 2%2C chain F 285012 286016 - 334 - - argF BW25113_0273 - +- 286360 286863 - 167 - - insB1 BW25113_0274 - +- 286782 287057 - 91 - - insA BW25113_0275 - +- 288033 288659 - 208 - - yagK BW25113_0277 - +DNA-binding protein 288931 289629 - 232 - - yagL BW25113_0278 - +- 289656 290510 - 284 - - yagM BW25113_0279 - +- 290850 291290 - 146 - - yagN BW25113_0280 - +putative phage integrase 291407 292807 - 466 - - intF BW25113_0281 - +- 293481 294437 - 318 - - paoD BW25113_0283 - +- 294447 296645 - 732 - - paoC BW25113_0284 - +- 296642 297598 - 318 - - paoB BW25113_0285 - +putative xanthine dehydrogenase 297595 298284 - 229 - - paoA BW25113_0286 - +- 298702 299316 + 204 - - yagU BW25113_0287 - +putative ferredoxin 299564 299893 - 109 - - ykgJ BW25113_0288 - +- 300206 300916 - 236 - - ecpE BW25113_0289 - +putative receptor 300885 302528 - 547 - - ecpD BW25113_0290 - +putative enzyme 302518 305043 - 841 - - ecpC BW25113_0291 - +- 305069 305737 - 222 - - ecpB BW25113_0292 - +- 305795 306382 - 195 - - ecpA BW25113_0293 - +putative regulator 306457 307047 - 196 - - ecpR BW25113_0294 - +- 307823 308050 + 75 - - ykgL BW25113_0295 - +- 308085 308225 - 46 - - ykgO BW25113_4506 - +- 308225 308488 - 87 - - ykgM BW25113_0296 - +- 308852 308953 - 33 - - ykgR BW25113_4671 - +- 311002 311301 + 99 - - insE1 BW25113_0298 - +- 311298 312164 + 288 - - insF1 BW25113_0299 - +- 313437 314030 - 197 - - rclC BW25113_0301 - +the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene%2C and has been deaccessioned 314042 314278 - 78 - - rclB BW25113_0303 - +putative oxidoreductase 314387 315712 - 441 - - rclA BW25113_0304 - +putative ARAC-type regulatory protein 315938 316792 + 284 - - rclR BW25113_0305 - +putative dehydrogenase subunit 317319 318038 + 239 - - ykgE BW25113_0306 - +- 318049 319476 + 475 - - ykgF BW25113_0307 - +putative transporter 319469 320164 + 231 - - ykgG BW25113_0308 - +- 320407 321075 - 222 - - ykgH BW25113_0310 - +- 321288 322958 - 556 - - betA BW25113_0311 - +NAD+-dependent betaine aldehyde dehydrogenase 322972 324444 - 490 - - betB BW25113_0312 - +probably transcriptional repressor of bet genes 324458 325045 - 195 - - betI BW25113_0313 - +high-affinity choline transport 325174 327207 + 677 - - betT BW25113_0314 - +- 328082 329170 + 362 - - yahA BW25113_0315 - +putative transcriptional regulator LYSR-type 329212 330144 - 310 - - yahB BW25113_0316 - +- 330236 330733 - 165 - - yahC BW25113_0317 - +putative transcription factor 330991 331596 + 201 - - yahD BW25113_0318 - +- 331636 332499 + 287 - - yahE BW25113_0319 - +putative oxidoreductase subunit 332489 334036 + 515 - - yahF BW25113_0320 - +- 334036 335454 + 472 - - yahG BW25113_0321 - +putative kinase 335876 336826 + 316 - - yahI BW25113_0323 - +putative deaminase 336836 338218 + 460 - - yahJ BW25113_0324 - +putative oxidoreductase 338595 339644 + 349 - - yahK BW25113_0325 - +- 339887 340702 + 271 - - yahL BW25113_0326 - +- 341115 341360 + 81 - - yahM BW25113_0327 - +putative cytochrome subunit of dehydrogenase 341377 342048 - 223 - - yahN BW25113_0328 - +- 342195 342470 + 91 - - yahO BW25113_0329 - +regulator for prp operon 342568 344154 - 528 - - prpR BW25113_0330 - +putative phosphonomutase 2 344393 345283 + 296 - - prpB BW25113_0331 - +putative citrate synthase%3B propionate metabolism? 345723 346892 + 389 - - prpC BW25113_0333 - +- 346926 348377 + 483 - - prpD BW25113_0334 - +putative propionyl-CoA synthetase 348417 350303 + 628 - - prpE BW25113_0335 - +cytosine permease/transport 350633 351892 + 419 - - codB BW25113_0336 - +- 351882 353165 + 427 - - codA BW25113_0337 - +cyn operon positive regulator 353502 354401 - 299 - - cynR BW25113_0338 - +- 354510 355169 + 219 - - cynT BW25113_0339 - +cyanate aminohydrolase%2C cyanase 355200 355670 + 156 - - cynS BW25113_0340 - +cyanate transport 355703 356857 + 384 - - cynX BW25113_0341 - +- 356960 357571 - 203 - - lacA BW25113_0342 - +galactoside permease (lactose permease%2C M protein) (MFS family) 357637 358890 - 417 - - lacY BW25113_0343 - +transcriptional repressor of the lac operon 360661 361743 - 360 - - lacI BW25113_0345 - +transcriptional regulator for mhp operon 361820 362653 - 277 - - mhpR BW25113_0346 - +- 362844 364508 + 554 - - mhpA BW25113_0347 - +- 364510 365454 + 314 - - mhpB BW25113_0348 - +- 367571 368380 + 269 - - mhpD BW25113_0350 - +acetaldehyde dehydrogenase 368377 369327 + 316 - - mhpF BW25113_0351 - +4-hydroxy-2-ketovalerate aldolase 369324 370337 + 337 - - mhpE BW25113_0352 - +putative transport protein 370915 372126 + 403 - - mhpT BW25113_0353 - +- 372228 372767 + 179 - - yaiL BW25113_0354 - +putative S-formylglutathione hydrolase 372991 373824 - 277 - - frmB BW25113_0355 - +alcohol dehydrogenase class III%3B formaldehyde dehydrogenase%2C glutathione-dependent 373918 375027 - 369 - - frmA BW25113_0356 - +repressor of frmRAB 375062 375337 - 91 - - frmR BW25113_0357 - +- 375525 376298 - 257 - - yaiO BW25113_0358 - +- 376807 377172 + 121 - - insC1 BW25113_0360 - +- 377130 378035 + 301 - - insD1 BW25113_0361 - +polysaccharide metabolism 378195 379391 - 398 - - yaiP BW25113_0363 - +- 379515 380072 - 185 - - yaiS BW25113_0364 - +taurine transport system periplasmic protein 380688 381650 + 320 - - tauA BW25113_0365 - +taurine ATP-binding component of a transport system 381663 382430 + 255 - - tauB BW25113_0366 - +taurine transport system permease protein 382427 383254 + 275 - - tauC BW25113_0367 - +- 383251 384102 + 283 - - tauD BW25113_0368 - +5-aminolevulinate dehydratase %3D porphobilinogen synthase 384209 385183 - 324 - - hemB BW25113_0369 - +- 387195 388061 - 288 - - insF1 BW25113_0372 - +- 388058 388357 - 99 - - insE1 BW25113_0373 - +- 389962 390585 + 207 - - yaiV BW25113_0375 - +- 390586 391743 - 385 - - ampH BW25113_0376 - +sensitivity to microcin B17%2C possibly envelop protein 392095 393315 + 406 - - sbmA BW25113_0377 - +- 393328 394422 + 364 - - yaiW BW25113_0378 - +- 394481 394789 - 102 - - yaiY BW25113_0379 - +- 395049 395261 + 70 - - yaiZ BW25113_0380 - +- 395285 396379 - 364 - - ddlA BW25113_0381 - +- 396842 397102 + 86 - - iraP BW25113_0382 - +alkaline phosphatase%3B start codon corrected 397203 398618 + 471 - - phoA BW25113_0383 - +induced by phosphate starvation 398737 399057 + 106 - - psiF BW25113_0384 - +- 399159 400274 + 371 - - yaiC BW25113_0385 - +pyrroline-5-carboxylate reductase 400291 401100 - 269 - - proC BW25113_0386 - +- 401220 401678 + 152 - - yaiI BW25113_0387 - +- 401861 402385 + 174 - - aroL BW25113_0388 - +- 402435 402626 + 63 - - yaiA BW25113_0389 - +protein of aro operon%2C regulated by aroR 402884 403561 + 225 - - aroM BW25113_0390 - +- 403633 403917 + 94 - - yaiE BW25113_0391 - +- 404564 405475 - 303 - - rdgC BW25113_0393 - +possible NAGC-like transcriptional regulator 405600 406508 + 302 - - mak BW25113_0394 - +involved in either transport or processing of arabinose polymers 406753 407937 - 394 - - araJ BW25113_0396 - +ATP-dependent dsDNA exonuclease 408063 411209 - 1048 - - sbcC BW25113_0397 - +ATP-dependent dsDNA exonuclease 411206 412408 - 400 - - sbcD BW25113_0398 - +positive response regulator for pho regulon%2C sensor is PhoR (or CreC) 412598 413287 + 229 - - phoB BW25113_0399 - +positive and negative sensor protein for pho regulon 413345 414640 + 431 - - phoR BW25113_0400 - +branched chain amino acid transport system II carrier protein 415047 416366 + 439 - - brnQ BW25113_0401 - +proline permease transport protein 416442 417815 + 457 - - proY BW25113_0402 - +- 417974 419788 + 604 - - malZ BW25113_0403 - +putative glycoprotein 419793 420374 - 193 - - acpH BW25113_0404 - +synthesis of queuine in tRNA%3B probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase 420467 421537 + 356 - - queA BW25113_0405 - +- 421593 422720 + 375 - - tgt BW25113_0406 - +- 422743 423075 + 110 - - yajC BW25113_0407 - +protein secretion%3B membrane protein%2C part of the channel 423103 424950 + 615 - - secD BW25113_0408 - +protein secretion%2C membrane protein 424961 425932 + 323 - - secF BW25113_0409 - +- 426061 426408 + 115 - - yajD BW25113_0410 - +nucleoside channel%3B receptor of phage T6 and colicin K 426585 427469 - 294 - - tsx BW25113_0411 - +- 427768 428307 - 179 - - yajI BW25113_0412 - +- 428458 428907 + 149 - - nrdR BW25113_0413 - +- 428911 430014 + 367 - - ribD BW25113_0414 - +riboflavin synthase%2C beta chain 430103 430573 + 156 - - ribE BW25113_0415 - +transcription termination%3B L factor 430593 431012 + 139 - - nusB BW25113_0416 - +- 431090 432067 + 325 - - thiL BW25113_0417 - +phosphatidylglycerophosphatase 432045 432563 + 172 - - pgpA BW25113_0418 - +putative NAD(P)H-dependent xylose reductase 432617 433591 - 324 - - yajO BW25113_0419 - +1-deoxyxylulose-5-phosphate synthase%3B flavoprotein 433771 435633 - 620 - - dxs BW25113_0420 - +- 435658 436557 - 299 - - ispA BW25113_0421 - +exonuclease VII%2C small subunit 436557 436799 - 80 - - xseB BW25113_0422 - +- 437005 438453 + 482 - - thiI BW25113_0423 - +- 438507 439097 - 196 - - yajL BW25113_0424 - +2-dehydropantoate 2-reductase 439060 439971 - 303 - - panE BW25113_0425 - +- 440139 440630 + 163 - - yajQ BW25113_0426 - +putative transport protein 440758 442122 - 454 - - yajR BW25113_0427 - +protoheme IX farnesyltransferase (haeme O biosynthesis) 442271 443161 - 296 - - cyoE BW25113_0428 - +- 443173 443502 - 109 - - cyoD BW25113_0429 - +- 443502 444116 - 204 - - cyoC BW25113_0430 - +- 444106 446097 - 663 - - cyoB BW25113_0431 - +- 446119 447066 - 315 - - cyoA BW25113_0432 - +regulates beta-lactamase synthesis 447526 449001 - 491 - - ampG BW25113_0433 - +putative polymerase/proteinase 449045 449623 - 192 - - yajG BW25113_0434 - +possible regulator of murein genes 449928 450245 + 105 - - bolA BW25113_0435 - +trigger factor%3B a molecular chaperone involved in cell division 450589 451887 + 432 - - tig BW25113_0436 - +ATP-dependent proteolytic subunit of clpA-clpP serine protease%2C heat shock protein F21.5 452133 452756 + 207 - - clpP BW25113_0437 - +ATP-dependent specificity component of clpP serine protease%2C chaperone 452882 454156 + 424 - - clpX BW25113_0438 - +DNA-binding%2C ATP-dependent protease La%3B heat shock K-protein 454344 456698 + 784 - - lon BW25113_0439 - +DNA-binding protein HU-beta%2C NS1 (HU-1) 456907 457179 + 90 - - hupB BW25113_0440 - +- 457371 459242 + 623 - - ppiD BW25113_0441 - +- 459393 459764 + 123 - - ybaV BW25113_0442 - +- 459858 460256 + 132 - - fadM BW25113_0443 - +- 460308 461003 - 231 - - queC BW25113_0444 - +- 461068 462768 - 566 - - ybaE BW25113_0445 - +- 462868 463686 + 272 - - cof BW25113_0446 - +putative LRP-like transcriptional regulator 463839 464297 + 152 - - ybaO BW25113_0447 - +- 464327 466099 + 590 - - mdlA BW25113_0448 - +- 466092 467873 + 593 - - mdlB BW25113_0449 - +nitrogen regulatory protein P-II 2 468054 468392 + 112 - - glnK BW25113_0450 - +probable ammonium transporter 468422 469708 + 428 - - amtB BW25113_0451 - +- 469757 470617 - 286 - - tesB BW25113_0452 - +glycoprotein/polysaccharide metabolism 470835 471407 + 190 - - ybaY BW25113_0453 - +- 471438 471827 - 129 - - ybaZ BW25113_0454 - +- 471904 472017 + 37 - - ffs BW25113_0455 - +- 472128 472481 + 117 - - ybaA BW25113_0456 - +- 472523 474073 - 516 - - ylaB BW25113_0457 - +- 474237 474707 - 156 - - ylaC BW25113_0458 - +- 474823 475374 - 183 - - maa BW25113_0459 - +haemolysin expression modulating protein 475546 475764 - 72 - - hha BW25113_0460 - +- 475790 476164 - 124 - - tomB BW25113_0461 - +acridine efflux pump 476710 479859 - 1049 - - acrB BW25113_0462 - +acridine efflux pump 479882 481075 - 397 - - acrA BW25113_0463 - +acrAB operon repressor 481217 481864 + 215 - - acrR BW25113_0464 - +mechanosensitive channel protein 481992 485354 + 1120 - - mscK BW25113_0465 - +- 485566 485727 - 53 - - ybaM BW25113_0466 - +- 485741 486268 - 175 - - priC BW25113_0467 - +putative gene 58 486338 486715 + 125 - - ybaN BW25113_0468 - +- 486868 487419 + 183 - - apt BW25113_0469 - +DNA polymerase III%2C tau and gamma subunits%3B DNA elongation factor III 487548 489479 + 643 - - dnaX BW25113_0470 - +- 489532 489861 + 109 - - ybaB BW25113_0471 - +recombination and repair 489861 490466 + 201 - - recR BW25113_0472 - +chaperone Hsp90%2C heat shock protein C 62.5 490576 492450 + 624 - - htpG BW25113_0473 - +adenylate kinase activity%3B pleiotropic effects on glycerol-3-phosphate acyltransferase activity 492631 493275 + 214 - - adk BW25113_0474 - +ferrochelatase: final enzyme of heme biosynthesis 493511 494473 + 320 - - hemH BW25113_0475 - +- 494470 495429 - 319 - - aes BW25113_0476 - +inosine-guanosine kinase 495581 496885 + 434 - - gsk BW25113_0477 - +putative transport protein 497018 498694 - 558 - - ybaL BW25113_0478 - +fosmidomycin resistance protein 498932 500152 - 406 - - fsr BW25113_0479 - +UDP-sugar hydrolase (5'-nucleotidase) 500370 502022 + 550 - - ushA BW25113_0480 - +- 502059 502538 - 159 - - ybaK BW25113_0481 - +- 502660 502743 + 27 - - chiX BW25113_4585 - +putative ligase 502742 503536 - 264 - - ybaP BW25113_0482 - +- 503674 504015 + 113 - - ybaQ BW25113_0483 - +- 504331 506835 - 834 - - copA BW25113_0484 - +putative glutaminase 507097 508029 + 310 - - glsA BW25113_0485 - +putative amino acid/amine transport protein 508032 509324 + 430 - - ybaT BW25113_0486 - +- 509449 509856 + 135 - - cueR BW25113_0487 - +- 509857 510315 - 152 - - ybbJ BW25113_0488 - +putative protease 510312 511229 - 305 - - qmcA BW25113_0489 - +putative ATP-binding component of a transport system 511375 512052 + 225 - - fetA BW25113_0490 - +putative metal resistance protein 512039 512818 + 259 - - fetB BW25113_0491 - +putative thioredoxin-like protein 512881 513735 - 284 - - ybbN BW25113_0492 - +- 513796 514605 - 269 - - ybbO BW25113_0493 - +acyl-CoA thioesterase I%3B also functions as protease I 514595 515221 - 208 - - tesA BW25113_0494 - +putative ATP-binding component of a transport system 515189 515875 + 228 - - ybbA BW25113_0495 - +putative oxidoreductase 515872 518286 + 804 - - ybbP BW25113_0496 - +rhsD protein in rhs element 518717 522997 + 1426 - - rhsD BW25113_0497 - +- 523037 523405 + 122 - - ybbC BW25113_0498 - +putative capsule anchoring protein 525588 526682 - 364 - - mnmH BW25113_0503 - +putative transcriptional regulator LYSR-type 526751 527677 - 308 - - allS BW25113_0504 - +- 527907 528389 + 160 - - allA BW25113_0505 - +- 528467 529282 + 271 - - allR BW25113_0506 - +- 529372 531153 + 593 - - gcl BW25113_0507 - +- 531166 531942 + 258 - - hyi BW25113_0508 - +- 532042 532920 + 292 - - glxR BW25113_0509 - +- 533089 534543 + 484 - - ybbW BW25113_0511 - +- 534603 535964 + 453 - - allB BW25113_0512 - +- 536021 537322 + 433 - - ybbY BW25113_0513 - +- 537344 538489 + 381 - - glxK BW25113_0514 - +- 538717 539502 - 261 - - allE BW25113_0515 - +- 539513 540748 - 411 - - allC BW25113_0516 - +- 540770 541819 - 349 - - allD BW25113_0517 - +involved in protein transport%3B multicopy suppressor of dominant negative ftsH mutants 542136 543803 + 555 - - fdrA BW25113_0518 - +- 543813 545072 + 419 - - ylbE BW25113_4572 - +putative carboxylase 545083 545898 + 271 - - ylbF BW25113_0520 - +putative carbamate kinase 545895 546788 + 297 - - ybcF BW25113_0521 - +phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C CO(2)-fixing subunit 546983 548050 - 355 - - purK BW25113_0522 - +phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C catalytic subunit 548047 548556 - 169 - - purE BW25113_0523 - +- 548674 549396 - 240 - - lpxH BW25113_0524 - +- 549399 549893 - 164 - - ppiB BW25113_0525 - +cysteine tRNA synthetase 550067 551452 + 461 - - cysS BW25113_0526 - +- 551488 552009 - 173 - - ybcI BW25113_0527 - +- 552117 552329 - 70 - - ybcJ BW25113_0528 - +5%2C10-methylene-tetrahydrofolate dehydrogenase%3B 5%2C10-methylene-tetrahydrofolate cyclohydrolase 552331 553197 - 288 - - folD BW25113_0529 - +putative fimbrial-like protein 553668 554210 + 180 - - sfmA BW25113_0530 - +putative chaperone 554430 555122 + 230 - - sfmC BW25113_0531 -