Mercurial > repos > iuc > transit_hmm

diff transit_hmm.xml @ 3:a15f2773a7d7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit bd061799ebd49ada1a666d0815720c18291728da"
author iuc
date Wed, 16 Oct 2019 04:32:33 -0400
parents 32da07a53d3b
children 532a84f0de1e
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--- a/transit_hmm.xml	Tue Oct 08 08:24:28 2019 -0400
+++ b/transit_hmm.xml	Wed Oct 16 04:32:33 2019 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="transit_hmm" name="HMM" version="@VERSION@+galaxy1">
+<tool id="transit_hmm" name="HMM" version="@VERSION@+galaxy2">
     <description>- determine essentiality of a genome</description>
     <macros>
         <import>macros.xml</import>
@@ -9,13 +9,12 @@
     	@LINK_INPUTS@
         transit hmm $input_files annotation.dat transit_out.txt
         @STANDARD_OPTIONS@
-        -r $replicates
         $loess
         ]]>
     </command>
     <inputs>
         <expand macro="standard_inputs">
-        	<expand macro="replicates" />
+        	<expand macro="handle_replicates" />
             <param name="loess" argument="-l" type="boolean" truevalue="-l" falsevalue="" label="Perform LOESS Correction" help="Helps remove possible genomic position bias." />
         </expand>
     </inputs>