Mercurial > repos > iuc > transit_hmm
view test-data/transit-in1-rep2.wig @ 5:7db455b6434b draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
author | iuc |
---|---|
date | Sat, 27 Nov 2021 09:49:41 +0000 |
parents | 32da07a53d3b |
children |
line wrap: on
line source
# from Griffin et al, (2011). PLOS Pathogens, e1002251. variableStep chrom=H37Rv 60 0 72 0 102 0 188 0 246 0 333 0 360 0 426 0 448 0 471 0 483 0 494 0 504 0 514 0 525 0 534 0 601 0 653 0 670 0 706 0 741 0 784 0 794 0 843 0 989 0 1092 0 1104 0 1267 0 1278 0 1345 0 1423 0 1522 124 1552 0 1635 201 1779 0 1782 0 1788 0 1847 0 1858 342 1921 21 2001 0 2012 0 2063 0 2104 0 2141 0 2232 0 2290 0 2315 0 2318 0 2333 0 2344 0 2363 0 2387 0 2404 0 2427 0 2479 0 2507 0 2537 0 2591 0 2648 0 2738 0 2774 0 2845 0 2920 0 3027 0 3056 0 3066 0 3070 0 3119 0 3131 0 3145 0 3222 0 3228 0 3277 0 3283 5 3329 107 3372 0 3379 0 3384 0 3396 0 3412 0 3425 0 3441 0 3467 56 3471 0 3513 0 3591 0 3682 0 3708 49 3728 0 3739 161 3770 0 3782 37 3796 0 3833 27 3925 13 3960 0 3967 0 3986 4 4011 6 4028 1 4094 0 4118 0 4121 110 4130 0 4158 0 4207 0 4217 0 4353 0 4664 0 4721 0 4789 0 4912 0 4961 0 4970 0 4989 23 4995 63 5066 58 5120 69 5128 40 5170 90 5230 0 5273 0 5287 0 5336 0 5364 0 5420 0 5439 0 5517 0 5547 0 5579 0 5586 0 5623 0 5631 0 5669 0 5687 0 5792 0 5977 0 5996 0 6055 0 6128 0 6230 0 6249 0 6286 0 6403 0 6490 0 6502 0 6526 0 6605 0 6612 0 6672 0 6729 0 6793 0 6809 0 6856 0 6944 0 6983 0 7067 0 7077 0 7093 0 7225 0 7265 0 7299 101 7383 0 7392 0 7470 0 7551 0 7578 0 7620 0 7686 0 7763 0 7767 0 7798 0 7865 0 7970 0 8031 0 8077 0 8099 0 8127 0 8219 0 8236 0 8288 0 8295 0 8338 0 8391 0 8394 0 8436 0 8486 0 8546 0 8786 0 8858 0 8874 0 8901 0 9030 0 9045 0 9100 0 9150 0 9165 0 9419 0 9465 0 9492 0 9503 0 9519 0 9526 0 9542 0 9564 0 9624 0 9776 127 9816 325 9850 0 9877 115 9894 21 9903 49 10023 0 10104 0 10277 0 10299 0 10414 0 10426 60 10583 32 10600 0 10608 0 10769 75 10826 105 10857 0 10876 0 10884 0 10892 0 10894 0 10907 0 10923 0 10953 0 11096 1 11119 0 11131 0 11176 0 11198 0 11207 15 11289 82 11301 0 11422 385 11444 0 11530 264 11556 31 11618 0 11659 0 11675 207 11679 452 11733 406 11739 237 11743 886 11749 0 11787 65 11848 22 12042 94 12054 178 12145 0 12250 98 12352 305 12466 156 12491 256 12512 9 12530 17 12621 216 12663 87 12750 63 12798 16 13025 1099 13046 138 13079 13 13155 25 13168 3 13275 0 13309 164 13322 65 13325 851 13369 20 13459 0 13469 0 13486 0 13560 289 13567 40 13595 0 13608 0 13669 0 13686 0 13699 0 13772 0 13852 0 13903 0 14021 43 14059 88 14080 266 14088 69 14096 699 14177 94 14367 0 14421 0 14454 0 14621 326 14661 366 14665 402 14667 1 14677 9 14749 3 14758 420 14782 0 14813 182 14821 0 14872 95 14902 0 14938 0 14968 0 15023 0 15084 0 15114 0 15221 0 15245 0 15269 0 15304 0 15327 0 15366 0 15464 0 15515 0 15576 0 15591 0 15657 0 15773 0 15812 0 15927 0 16161 0 16184 0 16273 0 16433 0 16520 0 16535 0 16558 0 16683 0 16794 0 16851 0 16872 0 16926 0 17015 0 17176 0 17190 0 17205 0 17247 0 17313 0 17333 0 17439 0 17476 296 17483 0 17586 0 17862 0 17981 0 18010 0 18123 0 18140 0 18161 0 18215 0 18454 0 18488 0 18527 0 18666 0 18693 0 18725 0 18907 0 19038 1 19043 0 19081 0 19100 0 19107 0 19134 0 19138 74 19151 9 19179 0 19194 0 19226 0 19239 0 19259 0 19310 0 19453 10 19461 0 19582 18 19667 0 19693 44 19760 0 19771 0 19829 0 19838 2 19914 0 19935 0 19951 0 19963 56 19973 0 19984 0 20002 0 20037 0 20044 12 20092 149 20178 3 20211 0 20234 44 20266 0 20278 3 20345 54 20349 10 20376 10 20456 0 20497 41 20547 206 20650 0 20671 0 20680 2 20712 0 20756 0 20787 0 20859 0 20883 160 21041 0 21204 0 21210 1 21266 0 21359 53 21414 63 21477 0 21481 199 21548 0 21608 0 21777 0 22070 31 22092 0 22118 22 22144 0 22187 0 22195 1 22199 4 22202 23 22279 0 22314 0 22338 69 22454 45 22460 0 22578 0 22590 0 22625 0 22817 0 22836 0 22887 0 22932 0 23083 0 23099 0 23125 0 23153 0 23205 0 23330 0 23361 24 23381 81 23394 178 23413 0 23442 0 23512 0 23550 0 23582 0 23640 166 23663 0 23681 0 23723 219 23807 42 23856 34 23933 0 23947 0 24102 0 24136 0 24159 0 24174 0 24183 0 24207 0 24231 0 24237 0 24261 0 24282 0 24309 0 24318 0 24336 0 24351 0 24372 0 24384 0 24402 0 24447 0 24483 0 24492 0 24501 0 24534 0 24552 0 24564 0 24579 0 24621 0 24633 0 24657 0 24678 0 24696 0 24714 0 24732 0 24750 0 24768 0 24801 0 24819 0 24840 0 24909 0 24921 0 24924 0 24960 0 24986 0 25069 0 25099 0 25143 50 25168 88 25170 130 25252 0 25260 2 25438 41 25505 25 25528 0 25613 53 25616 434 25624 170 25730 581 25796 1 25832 0 25844 52 25906 0 25914 413 25960 4 25967 3 26040 355 26067 39 26141 1114 26175 220 26183 288 26193 422 26197 165 26261 22 26280 1 26290 0 26300 91 26377 73 26417 0 26622 48 26742 73 26780 12 26831 3 26838 0 26860 342 26873 21 26932 512 27213 471 27245 320 27252 99 27299 678 27354 33 27367 15 27399 14 27410 908 27470 0 27482 0 27484 0 27518 0 27526 0 27528 0 27530 0 27534 0 27558 0 27566 0 27569 0 27578 0 27683 0 27703 0 27784 0 27906 0 27925 0 27994 0 28003 0 28005 0 28145 0 28208 0 28232 0 28263 0 28368 109 28455 174 28512 14 28661 12 28670 140 28679 1 28687 0 28705 612 28803 0 28914 79 28974 46 29010 514 29205 227 29270 140 29354 53 29403 0 29457 46 29516 55 29567 68 29587 33 29605 0 29620 0 29659 104 29667 1205 29671 710 29776 5 29892 0 29920 0 29923 102 30009 0 30119 67 30195 0 30271 416 30449 163 30479 405 30679 119 30911 0 30968 172 31004 25 31066 179 31075 120 31149 185 31153 362 31223 139 31261 0 31323 49 31381 0 31410 0 31589 117 31597 182 31684 0 31701 0 31810 0 31825 159 31967 0 31978 0 32045 166 32051 0 32134 63 32163 73 32197 24 32253 230 32403 0 32434 115 32493 118 32518 0 32673 172 32755 50 32777 223 32886 292 32910 20 32995 0 33023 15 33045 116 33058 381 33113 200 33152 0 33217 588 33355 0 33359 99 33449 0 33490 0 33533 0 33560 0 33650 0 33797 249 33805 20 33857 36 33861 278 33863 83 33901 0 33907 0 33927 0 33933 0 33942 0 34010 0 34028 0 34158 0 34163 0 34182 66 34207 0 34241 0 34313 0 34364 9 34367 10 34401 45 34418 103 34420 20 34504 171 34590 48 34679 425 34688 18 34743 0 34849 0 34874 163 34893 0 34937 25 34999 1 35021 0 35075 0 35079 0 35117 0 35119 0 35135 0 35160 0 35182 0 35203 0 35206 0 35213 0 35250 0 35261 8 35293 0 35304 0 35326 0 35343 0 35353 0 35388 0 35409 0 35422 342 35453 0 35480 0 35489 0 35570 108 35630 0 35703 388 35750 0 35781 104 35873 30 35910 189 36029 114 36191 587 36326 447 36356 282 36368 65 36428 19 36455 1041 36515 110 36519 128 36606 0 36677 157 36734 6 36802 120 37093 512 37125 267 37184 15 37214 28 37224 0 37353 301 37361 251 37404 57 37512 0 37626 105 37666 172 37674 0 37752 32 37775 190 37784 573 37829 34 37944 512 37977 14 38003 103 38047 25 38065 33 38096 54 38133 296 38249 42 38363 8 38444 345 38517 387 38588 12 38846 294 38902 0 39125 43 39290 772 39312 117 39343 708 39845 454 39873 67 39878 0 39937 0 39941 57 39967 43 40011 44 40025 897 40141 54 40156 11 40200 0 40238 167 40326 0 40392 0 40474 54 40496 3 40543 0 40585 0 40849 0 40876 0 40930 0 40961 0 41179 47 41242 60 41248 134 41374 389 41427 303 41496 242 41593 0 41632 18 41718 115 41727 0 41910 297 41915 248 41986 9 42060 0 42083 0 42208 117 42276 582 42362 469 42434 0 42473 0 42493 0 42644 17 42713 156 42806 0 42852 2 42854 14 42881 21 43245 0 43421 79 43515 0 43547 146 43549 323 43634 0 43640 0 43642 0 43660 0 43698 0 43796 0 43838 0 43856 0 43865 0 43885 0 43902 0 43937 0 43944 0 43966 0 44069 0 44094 0 44100 0 44102 0 44145 0 44249 0 44261 0 44298 0 44302 0 44408 0 44600 0 44684 0 44720 0 44798 0 44849 0 44864 0 44869 0 44937 0 44952 0 44968 0 44984 0 44986 0 45017 0 45140 0 45167 0 45239 0 45315 0 45353 0 45401 0 45413 0 45464 0 45524 0 45563 0 45590 0 45623 0 45647 0 45649 0 45659 0 45665 0 45686 0 45731 0 45784 0 45804 0 45830 0 45841 0 45854 0 45920 0 46009 0 46014 0 46072 0 46087 0 46100 0 46164 0 46192 0 46271 0 46295 0 46320 0 46432 0 46469 105 46503 0 46515 55 46525 0 46532 0 46568 0 46576 0 46779 0 46959 137 47084 0 47097 121 47119 21 47220 0 47224 0 47301 0 47316 0 47363 1 47367 33 47391 0 47459 78 47577 138 47610 217 47682 83 47706 0 47907 128 48038 36 48079 0 48087 169 48104 87 48108 510 48203 0 48282 0 48388 67 48446 1164 48450 312 48466 147 48481 25 48489 31 48514 742 48648 0 48654 4 48663 70 48691 0 48730 20 48765 0 48782 62 48870 0 48895 8 48954 66 48983 159 48991 1 49038 79 49290 292 49388 139 49553 23 49616 208 49656 327 49750 183 49934 236 49951 0 49973 0 50022 0 50097 0 50214 0 50265 0 50552 0 50641 0 50655 0 50691 0 50778 0 50781 0 50803 0 50955 0 50987 0 51012 0 51015 0 51018 0 51104 0 51125 0 51138 0 51146 210 51186 0 51297 0 51453 341 51519 61 51609 0 51611 48 51621 0 51675 0 51745 0 51765 41 51793 0 51804 33 51806 27 51838 117 51880 25 51892 0 51899 7 51907 941 51967 51 52123 196 52127 515 52129 502 52180 668 52189 84 52204 37 52366 76 52524 126 52541 492 52659 38 52706 812 52709 249 52746 0 52774 203 52797 620 52829 489 52837 62 52844 0 52873 201 52918 0 53033 36 53114 60 53152 258 53187 0 53242 35 53488 21 53634 0 53648 12 53702 35 53740 0 53809 0 53888 0 53977 0 53987 44 54091 42 54113 0 54128 0 54146 0 54173 16 54300 0 54560 29 54635 0 54638 0 54703 72 54752 0 54759 7 54869 85 54872 0 55025 0 55058 0 55081 0 55085 59 55104 0 55191 0 55232 0 55251 0 55288 0 55337 0 55354 0 55398 0 55421 0 55523 0 55560 62 55612 37 55642 0 55767 0 55796 72 55835 0 55995 0 56008 62 56011 40 56023 0 56031 0 56044 0 56057 10 56080 93 56131 222 56155 0 56157 99 56164 0 56185 281 56191 0 56207 0 56218 51 56228 0 56354 0 56402 25 56521 0 56539 17 56716 2 56822 0 56842 0 57043 21 57046 265 57050 737 57052 0 57157 5 57183 0 57278 27 57392 0 57510 88 57615 9 57702 117 57734 272 57878 272 57931 0 57956 194 57985 0 58049 0 58105 48 58191 0 58201 0 58247 0 58284 0 58339 0 58369 0 58460 0 58480 0 58522 0 58526 56 58703 0 58759 0 58822 0 58834 0 58919 0 59113 0 59175 0 59215 0 59242 0 59358 54 59374 0 59405 327 59481 0 59489 97 59584 15 59593 5 59641 0 59747 0 59839 110 59865 45 59986 251 60027 0 60071 0 60126 93 60135 0 60152 0 60162 15 60211 0 60236 0 60256 145 60273 49 60290 0 60334 59 60345 0 60357 0 60415 0 60453 0 60538 0 60550 0 60567 0 60591 0 60612 0 60699 0 60747 0 60750 0 60793 0 60819 0 60825 0 60885 0 61004 0 61310 0 61404 0 61434 0 61550 0 61556 0 61628 0 61817 0 61888 0 61989 0 62048 0 62070 0 62116 0 62161 0 62167 0 62197 0 62209 0 62310 0 62313 0 62327 0 62572 0 62733 0 62794 0 62828 0 62974 0 63194 71 63212 79 63241 0 63377 911 63379 464 63431 2 63467 88 63494 86 63501 44 63521 0 63576 114 63626 161 63756 0 63758 0 63788 0 63800 130 63802 86 63825 0 63863 106 63884 145 63887 494 63890 124 63908 122 63918 0 64023 0 64044 0 64073 0 64179 0 64181 0 64306 0 64347 0 64420 0 64440 0 64518 0 64552 0 64572 0 64581 0 64603 0 64688 0 64691 0 64708 0 64716 0 64800 0 64823 0 64914 0 64955 126 64986 0 65109 465 65125 0 65169 55 65226 27 65315 0 65323 0 65434 191 65500 110 65549 437 65551 118 65666 83 65692 318 65715 218 65758 12 65840 173 65933 0 65987 260 66035 218 66061 73 66065 377 66098 46 66233 0 66275 145 66364 3 66386 67 66410 36 66449 86 66511 119 66578 195 66652 0 66659 150 66692 0 66764 0 66787 26 67009 0 67071 107 67127 289 67136 0 67138 0 67156 0 67247 331 67290 44 67299 75 67316 29 67364 141 67898 93 67916 62 67955 201 68150 556 68185 536 68222 26 68237 95 68246 289 68256 308 68276 14 68310 27 68321 45 68360 359 68377 971 68380 567 68387 70 68407 0 68444 0 68577 0 68594 0 68608 31 68726 0 68733 0 68737 50 68792 176 68861 107 68872 0 68894 14 69044 107 69085 0 69121 0 69170 0 69190 142 69281 180 69301 0 69316 0 69339 368 69367 109 69375 0 69422 1 69444 0 69589 0 69591 62 69625 0 69652 0 69657 103 69661 0 69675 0 69744 51 69792 43 69806 0 69823 0 69850 46 69928 0 69999 1 70021 0 70028 0 70030 662 70099 9 70102 0 70135 0 70177 38 70198 114 70204 9 70206 19 70390 0 70435 0 70453 144 70459 62 70534 115 70542 0 70570 53 70583 0 70699 0 70728 0 70744 193 70821 0 70843 4 70909 64 70933 0 70963 1 70988 0 71098 1 71143 207 71158 26 71266 0 71300 45 71399 0 71519 0 71557 55 71571 1 71588 49 71594 196 71637 1 71679 986 71681 529 71834 1 71922 59 72031 1 72049 0 72076 246 72089 0 72109 48 72121 0 72255 0 72333 0 72356 0 72359 0 72388 0 72506 0 72518 0 72612 0 72636 0 72654 0 72770 0 72826 0 72857 0 72923 0 72989 0 73031 0 73247 0 73349 0 73415 0 73494 0 73549 0 73604 0 73682 0 73799 0 73961 0 73987 0 74045 12 74095 0 74129 0 74177 0 74192 0 74224 0 74281 0 74313 0 74320 0 74342 0 74374 0 74447 0 74483 0 74562 0 74572 6 74578 0 74696 18 74722 0 74749 0 74761 0 74908 0 75047 0 75049 25 75103 17 75128 0 75142 0 75156 0 75189 231 75203 0 75242 0 75244 0 75253 0 75275 155 75286 109 75500 19 75613 367 75615 1 75808 0 75826 2 75862 28 75881 0 75983 30 76069 0 76097 146 76105 0 76198 25 76298 87 76715 14 76727 2 76889 12 77005 0 77055 0 77108 56 77192 0 77289 0 77385 494 77422 0 77530 8 77641 0 77650 0 77838 0 77925 0 77955 35 78293 8 78364 0 78442 182 78463 28 78478 48 78567 0 78628 0 78662 0 78703 141 78706 105 78721 0 78733 294 78784 525 78921 0 79152 106 79256 84 79325 220 79365 0 79398 361 79427 5 79474 0 79485 0 79724 27 79787 709 79825 200 79894 31 79917 481 80115 0 80143 0 80149 0 80228 261 80352 111 80385 0 80426 59 80521 266 80551 0 80612 215 80787 331 80832 1 81165 54 81179 170 81196 25 81216 953 81220 455 81245 30 81374 199 81396 128 81445 12 81462 8 81552 0 81566 253 81576 0 81610 0 81671 0 81712 470 81715 820 81727 209 81735 119 81896 286 81919 221 81927 393 82004 108 82038 75 82361 98 82417 125 82504 0 82517 121 82585 48 82587 78 82666 241 82686 142 82765 0 82807 0 82826 0 82912 0 82996 259 83114 63 83141 0 83239 0 83326 8 83357 5 83403 239 83409 0 83566 34 83585 0 83738 290 83846 1 83940 0 83946 140 83966 122 83981 77 83992 475 84065 12 84081 171 84173 0 84233 30 84313 0 84353 215 84434 476 84493 198 84508 3 84520 0 84543 252 84559 0 84617 18 84742 30 84811 0 84833 240 84872 367 84918 57 84930 23 84952 161 84956 222 85010 148 85113 50 85135 25 85166 38 85178 150 85223 176 85276 24 85300 92 85575 583 85637 133 85720 0 85873 0 85915 0 85976 13 85986 0 86103 127 86135 16 86272 49 86280 62 86359 155 86378 57 86429 375 86436 49 86448 451 86486 0 86492 0 86509 0 86514 0 86527 0 86613 0 86621 4 86681 0 86698 0 86709 33 86835 0 86924 0 87124 3 87131 9 87276 0 87288 35 87309 11 87343 1 87433 6 87586 136 87605 271 87615 65 87631 128 87774 44 87875 214 87955 252 88015 70 88076 19 88232 524 88280 14 88299 0 88427 5 88439 18 88454 0 88604 35 88631 126 88665 133 88681 783 88732 65 88778 734 88954 208 88963 0 89271 277 89370 0 89383 765 89471 15 89478 0 89516 0 89523 0 89549 186 89593 179 89747 302 89797 516 89817 0 89885 41 89917 270 89982 0 89994 0 90015 0 90101 45 90240 114 90290 245 90321 63 90497 677 90587 0 90607 182 90619 53 90811 137 90935 110 90939 230 91072 201 91165 139 91216 0 91281 0 91291 0 91353 20 91937 0 92035 324 92134 368 92136 43 92155 14 92194 73 92196 370 92269 0 92278 97 92294 72 92334 117 92338 193 92393 7 92407 22 92638 17 92816 302 92857 126 92973 55 93199 0 93294 48 93434 0 93603 0 93773 140 94215 13 94244 0 94256 14 94269 34 94345 0 94428 45 94472 0 94485 79 94538 0 94564 20 94611 0 94776 28 94872 0 95042 58 95410 0 95445 0 95463 0 95549 0 95567 0 95594 42 95611 0 95636 0 95684 0 95727 0 95797 0 95840 0 96143 32 96188 0 96267 0 96319 0 96392 13 96458 100 96513 108 96566 0 96642 194 96647 0 96655 75 96688 0 96718 0 96872 0 96890 0 96912 0 96920 0 96936 0 96974 0 96980 139 97071 30 97102 1 97273 0 97285 0 97330 0 97335 0 97399 0 97470 0 97509 0 97581 47 97592 0 97623 0 97668 0 97688 1 97707 38 97718 0 97788 75 97823 0 97888 3 97893 64 98092 43 98152 139 98260 125 98297 0 98313 310 98330 34 98349 71 98379 43 98396 343 98437 0 98468 374 98552 47 98613 122 98692 0 98709 116 98751 0 98818 64 98836 0 98963 201 99023 207 99137 128 99151 0 99188 72 99322 186 99343 45 99444 70 99546 0 99609 0 99638 0 99732 86 99791 118 99848 26 99940 1185 100020 23 100068 0 100176 347 100179 316 100206 76 100256 0 100310 0 100459 12 100505 131 100517 854 100629 53 100805 124 100887 0 100983 207 101082 147 101095 48 101123 81 101166 76 101194 141 101198 1 101246 17 101319 313 101331 0 101409 373 101643 304 101686 47 101697 0 101715 10 101850 12 101864 16 102093 0 102135 0 102231 0 102385 0 102456 75 102531 360 102612 28 102683 126 102809 0 102816 0 102889 0 103041 29 103052 0 103106 1 103214 0 103405 0 103534 152 103630 57 103809 40 103957 10 104034 27 104050 120 104092 43 104113 160 104157 102 104424 61 104464 47 104472 30 104491 124 104562 67 104587 51 104611 71 104806 10 104952 0 105089 0 105096 0 105112 0 105146 0 105177 0 105188 159 105198 19 105208 0 105249 0 105259 69 105288 132 105319 0 105329 196 105331 209 105416 1060 105426 232 105507 38 105528 106 105586 0 105603 4 105732 176 105774 1 105808 29 105863 0 105871 0 105877 139 105908 0 105933 10 105939 0 105982 0 106017 61 106032 9 106038 109 106041 63 106050 0 106105 0 106154 0 106323 388 106355 100 106367 0 106483 147 106491 119 106535 0 106601 0 106667 860 106688 0 106742 73 106805 0 106807 0 106829 0 106836 47 106858 0 106906 0 106926 0 106929 0 106941 71 107024 0 107031 38 107033 0 107039 0 107106 155 107226 0 107245 166 107278 0 107288 18 107328 74 107436 8 107452 152 107456 881 107466 124 107553 0 107592 0 107696 0 107717 19 107735 57 107765 0 107795 41 107797 0 107858 19 107927 109 107947 40 108059 4 108129 0 108149 0 108179 0 108197 0 108272 0 108285 0 108344 0 108356 86 108393 0 108565 0 108586 0 108596 0 108692 0 108718 0 108807 0 108850 101 108854 37 108899 0 108952 102 108976 0 109024 0 109032 0 109070 0 109079 0 109104 0 109197 11 109215 130 109226 0