Mercurial > repos > iuc > transit_hmm
changeset 1:3c83ed97f9ee draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 2281efd6260f058371013e21163fa5931de99080
| author | iuc |
|---|---|
| date | Tue, 25 Jun 2019 17:44:54 -0400 |
| parents | 7c29da8b0011 |
| children | 32da07a53d3b |
| files | macros.xml test-data/hmm-sites1.txt |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/macros.xml Mon Apr 22 14:43:15 2019 -0400 +++ b/macros.xml Tue Jun 25 17:44:54 2019 -0400 @@ -12,7 +12,7 @@ <yield /> </requirements> </xml> - <token name="@VERSION@">2.3.3</token> + <token name="@VERSION@">2.5.2</token> <xml name="outputs"> <yield /> <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" />
--- a/test-data/hmm-sites1.txt Mon Apr 22 14:43:15 2019 -0400 +++ b/test-data/hmm-sites1.txt Tue Jun 25 17:44:54 2019 -0400 @@ -1,9 +1,11 @@ #HMM - Sites # Tn-HMM -#Console: python /home/inithello/miniconda3/envs/__transit@2.3.3/bin/transit hmm input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -tC 0.0 -r Mean +#Console: python /home/inithello/miniconda3/envs/__transit@2.5.2/bin/transit hmm input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -tC 0.0 -r Mean # # Mean: 225.23 # Median: 112.00 +# Normalization: TTR +# LOESS Correction: False # pins (obs): 0.548435 # pins (est): 0.668453 # Run length (r): 5