Mercurial > repos > iuc > transit_hmm
changeset 3:a15f2773a7d7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit bd061799ebd49ada1a666d0815720c18291728da"
| author | iuc |
|---|---|
| date | Wed, 16 Oct 2019 04:32:33 -0400 |
| parents | 32da07a53d3b |
| children | 532a84f0de1e |
| files | macros.xml transit_hmm.xml |
| diffstat | 2 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/macros.xml Tue Oct 08 08:24:28 2019 -0400 +++ b/macros.xml Wed Oct 16 04:32:33 2019 -0400 @@ -18,10 +18,10 @@ <yield /> <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" /> </xml> - <xml name="replicates"> - <param name="replicates" type="select" label="How to handle replicates"> + <xml name="handle_replicates"> + <param name="handle_replicates" type="select" label="How to handle replicates" value="Mean"> + <option value="Sum">Sum</option> <option value="Mean">Mean</option> - <option value="Sum">Sum</option> </param> </xml> <xml name="inputs"> @@ -78,5 +78,6 @@ -iN $nterm -tC $cterm -n $normalization + -r $handle_replicates </token> </macros>
--- a/transit_hmm.xml Tue Oct 08 08:24:28 2019 -0400 +++ b/transit_hmm.xml Wed Oct 16 04:32:33 2019 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="transit_hmm" name="HMM" version="@VERSION@+galaxy1"> +<tool id="transit_hmm" name="HMM" version="@VERSION@+galaxy2"> <description>- determine essentiality of a genome</description> <macros> <import>macros.xml</import> @@ -9,13 +9,12 @@ @LINK_INPUTS@ transit hmm $input_files annotation.dat transit_out.txt @STANDARD_OPTIONS@ - -r $replicates $loess ]]> </command> <inputs> <expand macro="standard_inputs"> - <expand macro="replicates" /> + <expand macro="handle_replicates" /> <param name="loess" argument="-l" type="boolean" truevalue="-l" falsevalue="" label="Perform LOESS Correction" help="Helps remove possible genomic position bias." /> </expand> </inputs>