comparison transit_resampling.xml @ 5:885459e1c83b draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"

4:ad4d42fabf32

<?xml version="1.0"?>
<tool id="transit_resampling" name="Resampling" version="@VERSION@+galaxy0">
    <description>- determine per-gene p-values</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

        <test>
            <param name="inputs" ftype="wig" value="transit-in1-rep1.wig,transit-in1-rep2.wig" />
            <param name="controls" ftype="wig" value="transit-co1-rep1.wig,transit-co1-rep2.wig,transit-co1-rep3.wig" />
            <param name="annotation" ftype="tabular" value="transit-in1.prot" />
            <param name="samples" value="1000" />
            <param name="burnin" value="100" />
            <param name="replicates" value="Replicates" />
            <output name="sites" file="resampling-sites1.txt" ftype="tabular" compare="sim_size" />
        </test>
    </tests>

5:885459e1c83b

<?xml version="1.0"?>
<tool id="transit_resampling" name="TRANSIT Resampling" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>- determine per-gene p-values</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

        <test>
            <param name="inputs" ftype="wig" value="transit-in1-rep1.wig,transit-in1-rep2.wig" />
            <param name="controls" ftype="wig" value="transit-co1-rep1.wig,transit-co1-rep2.wig,transit-co1-rep3.wig" />
            <param name="annotation" ftype="tabular" value="transit-in1.prot" />
            <param name="samples" value="1000" />
            <param name="replicates" value="Replicates" />
            <output name="sites" file="resampling-sites1.txt" ftype="tabular" compare="sim_size" />
        </test>
    </tests>