Mercurial > repos > iuc > transit_tn5gaps
changeset 0:e4f44f327cf1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
| author | iuc |
|---|---|
| date | Tue, 08 Oct 2019 08:24:46 -0400 |
| parents | |
| children | c68753eedf72 |
| files | gff_to_prot.py macros.xml test-data/gff_to_prot-in1.gff3 test-data/gff_to_prot-out1.txt test-data/gumbel-sites1.txt test-data/hmm-genes1.txt test-data/hmm-sites1.txt test-data/resampling-sites1.txt test-data/tn5gaps-sites1.txt test-data/transit-co1-rep1.wig test-data/transit-co1-rep2.wig test-data/transit-co1-rep3.wig test-data/transit-in-tn5.wig test-data/transit-in1-rep1.wig test-data/transit-in1-rep2.wig test-data/transit-in1.prot test-data/transit-in2-tn5.wig test-data/transit_tn5.prot transit_tn5gaps.xml |
| diffstat | 19 files changed, 22063 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gff_to_prot.py Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,65 @@ +#!/usr/bin/env python +import csv +import os +import sys + + +def get_description(line, parent): + cols = line.split('\t') + labels = {} + for pair in cols[8].split(";"): + k, v = pair.split('=') + labels[k] = v + + if (cols[2]) == "CDS" and labels["Parent"] == parent: + return labels.get("Note", '-') + return '-' + + +def convert_to_prot_table(fname, output_name): + gff_file = open(fname) + output_file = open(output_name, 'w') + writer = csv.writer(output_file, delimiter='\t') + lines = gff_file.readlines() + gff_file.close() + for i, line in enumerate(lines): + line = line.strip() + if line.startswith('#'): + continue + cols = line.split('\t') + if (len(cols) < 9): + print("Ignoring invalid row with entries: {0}".format(cols)) + elif (cols[2]) == "region": + continue + elif (cols[2]) == "CDS": + continue + elif (cols[2]) == "gene": + start = int(cols[3]) + end = int(cols[4]) + strand = cols[6].strip() + labels = {} + diff = int(abs(end - start) / 3) # What is this called? + for pair in cols[8].split(";"): + k, v = pair.split('=') + labels[k.strip()] = v.strip() + + Rv = labels["locus_tag"].strip() # error out if not found + gene = labels.get('Name', '') + desc = get_description(lines[i + 1], labels.get("ID", "")) if (i + 1) < len(lines) else '-' + vals = [desc, start, end, strand, diff, '-', '-', gene, Rv, '-'] + writer.writerow(vals) + output_file.close() + + +if __name__ == "__main__": + usage_string = "Usage: python gff-prot-converter.py <gff filename> <output filename>" + + if len(sys.argv) < 3: + print(usage_string) + sys.exit(0) + file_name = sys.argv[1] + if not os.path.exists(file_name): + print("File not found. Exiting...") + print(usage_string) + sys.exit(0) + convert_to_prot_table(file_name, sys.argv[2])
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,82 @@ +<?xml version="1.0"?> +<macros> + <xml name="citations"> + <citations> + <citation type="doi">10.1371/journal.pcbi.1004401</citation> + <yield /> + </citations> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">transit</requirement> + <requirement type="package" version="3.7">python</requirement> + <yield /> + </requirements> + </xml> + <token name="@VERSION@">3.0.1</token> + <xml name="outputs"> + <yield /> + <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" /> + </xml> + <xml name="replicates"> + <param name="replicates" type="select" label="How to handle replicates"> + <option value="Mean">Mean</option> + <option value="Sum">Sum</option> + </param> + </xml> + <xml name="inputs"> + <conditional name="mode"> + <param name="replicates" type="select" label="Operation mode" help="If set to 'Batch', transit will run and produce one output for each input file. If set to 'Replicates', transit will run once on all the input files."> + <option value="Batch">Batch</option> + <option value="Replicates">Replicates</option> + </param> + <when value="Batch"> + <param name="inputs" type="data" format="wig,tabular" multiple="false" label="Input .wig files" /> + </when> + <when value="Replicates"> + <param name="inputs" type="data" format="wig,tabular" multiple="true" label="Input .wig files" /> + </when> + </conditional> + <yield /> + <param name="annotation" type="data" format="gff3,tabular" label="Input annotation" /> + </xml> + <xml name="ignore_tas"> + <param name="nterm" argument="-iN" type="float" value="0" min="0" max="1" label="Ignore TAs occuring at given fraction of the N terminus." /> + <param name="cterm" argument="-iC" type="float" value="0" min="0" max="1" label="Ignore TAs occuring at given fraction of the C terminus." /> + </xml> + <xml name="normal"> + <param name="normalization" argument="-n" type="select" label="Normalization method" value="TTR"> + <option value="TTR">TTR</option> + <option value="nonorm">No Normalization</option> + <option value="nzmean">Non-Zero Mean</option> + <option value="totreads">Total read counts</option> + <option value="zinfnb">Zero inflated Negative Binomial model</option> + <option value="quantile">Quantile Normalization</option> + <option value="betageom">Beta-Geometric Correction</option> + </param> + </xml> + <xml name="standard_inputs"> + <expand macro="inputs" /> + <yield /> + <expand macro="ignore_tas" /> + <expand macro="normal" /> + </xml> + <token name="@LINK_INPUTS@"> + <![CDATA[ + #if str($mode.replicates) == 'Batch': + #set $input_files = $mode.inputs + #else: + #set $input_files = ','.join(['input_file_%d.wig' % idx for idx, _ in enumerate(str($mode.inputs).split(','))]) + #for idx, filename in enumerate(str($mode.inputs).split(',')): + ln -s '$filename' input_file_${idx}.wig && + #end for + #end if + ln -s '$annotation' annotation.dat && + ]]> + </token> + <token name="@STANDARD_OPTIONS@"> + -iN $nterm + -tC $cterm + -n $normalization + </token> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gff_to_prot-in1.gff3 Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,500 @@ +##sequence-region NC_007795.1 1 2821361 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=93061 +NC_007795.1 RefSeq region 1 2821361 . + . ID=NC_007795.1:1..2821361;Dbxref=taxon:93061;Is_circular=true;Name=ANONYMOUS;gbkey=Src;genome=chromosome;mol_type=genomic DNA;strain=NCTC 8325;sub-species=aureus +NC_007795.1 RefSeq gene 517 1878 . + . ID=gene-SAOUHSC_00001;Dbxref=GeneID:3919798;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=SAOUHSC_00001 +NC_007795.1 RefSeq CDS 517 1878 . + 0 ID=cds-YP_498609.1;Parent=gene-SAOUHSC_00001;Dbxref=Genbank:YP_498609.1,GeneID:3919798;Name=YP_498609.1;Note=binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself.;gbkey=CDS;gene=dnaA;product=chromosomal replication initiation protein;protein_id=YP_498609.1;transl_table=11 +NC_007795.1 RefSeq gene 2156 3289 . + . ID=gene-SAOUHSC_00002;Dbxref=GeneID:3919799;Name=SAOUHSC_00002;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00002 +NC_007795.1 RefSeq CDS 2156 3289 . + 0 ID=cds-YP_498610.1;Parent=gene-SAOUHSC_00002;Dbxref=Genbank:YP_498610.1,GeneID:3919799;Name=YP_498610.1;Note=binds the polymerase to DNA and acts as a sliding clamp;gbkey=CDS;product=DNA polymerase III subunit beta;protein_id=YP_498610.1;transl_table=11 +NC_007795.1 RefSeq gene 3670 3915 . + . ID=gene-SAOUHSC_00003;Dbxref=GeneID:3919176;Name=SAOUHSC_00003;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00003 +NC_007795.1 RefSeq CDS 3670 3915 . + 0 ID=cds-YP_498611.1;Parent=gene-SAOUHSC_00003;Dbxref=Genbank:YP_498611.1,GeneID:3919176;Name=YP_498611.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498611.1;transl_table=11 +NC_007795.1 RefSeq gene 3912 5024 . + . ID=gene-SAOUHSC_00004;Dbxref=GeneID:3919177;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=SAOUHSC_00004 +NC_007795.1 RefSeq CDS 3912 5024 . + 0 ID=cds-YP_498612.1;Parent=gene-SAOUHSC_00004;Dbxref=Genbank:YP_498612.1,GeneID:3919177;Name=YP_498612.1;Note=Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA;gbkey=CDS;gene=recF;product=recombination protein F;protein_id=YP_498612.1;transl_table=11 +NC_007795.1 RefSeq gene 5034 6968 . + . ID=gene-SAOUHSC_00005;Dbxref=GeneID:3919178;Name=SAOUHSC_00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00005 +NC_007795.1 RefSeq CDS 5034 6968 . + 0 ID=cds-YP_498613.1;Parent=gene-SAOUHSC_00005;Dbxref=Genbank:YP_498613.1,GeneID:3919178;Name=YP_498613.1;Note=DNA gyrase%2C B subunit;gbkey=CDS;product=DNA gyrase subunit B;protein_id=YP_498613.1;transl_table=11 +NC_007795.1 RefSeq gene 7005 9668 . + . ID=gene-SAOUHSC_00006;Dbxref=GeneID:3919179;Name=SAOUHSC_00006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00006 +NC_007795.1 RefSeq CDS 7005 9668 . + 0 ID=cds-YP_498614.1;Parent=gene-SAOUHSC_00006;Dbxref=Genbank:YP_498614.1,GeneID:3919179;Name=YP_498614.1;Note=DNA gyrase%2C A subunit;gbkey=CDS;product=DNA gyrase subunit A;protein_id=YP_498614.1;transl_table=11 +NC_007795.1 RefSeq gene 9755 10456 . - . ID=gene-SAOUHSC_00007;Dbxref=GeneID:3919180;Name=SAOUHSC_00007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00007 +NC_007795.1 RefSeq CDS 9755 10456 . - 0 ID=cds-YP_498615.1;Parent=gene-SAOUHSC_00007;Dbxref=Genbank:YP_498615.1,GeneID:3919180;Name=YP_498615.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498615.1;transl_table=11 +NC_007795.1 RefSeq gene 10893 12407 . + . ID=gene-SAOUHSC_00008;Dbxref=GeneID:3919181;Name=SAOUHSC_00008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00008 +NC_007795.1 RefSeq CDS 10893 12407 . + 0 ID=cds-YP_498616.1;Parent=gene-SAOUHSC_00008;Dbxref=Genbank:YP_498616.1,GeneID:3919181;Name=YP_498616.1;Note=catalyzes the degradation of histidine to urocanate and ammmonia;gbkey=CDS;product=histidine ammonia-lyase;protein_id=YP_498616.1;transl_table=11 +NC_007795.1 RefSeq gene 12786 14072 . + . ID=gene-SAOUHSC_00009;Dbxref=GeneID:3919182;Name=SAOUHSC_00009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00009 +NC_007795.1 RefSeq CDS 12786 14072 . + 0 ID=cds-YP_498617.1;Parent=gene-SAOUHSC_00009;Dbxref=Genbank:YP_498617.1,GeneID:3919182;Name=YP_498617.1;Note=catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;product=seryl-tRNA synthetase;protein_id=YP_498617.1;transl_table=11 +NC_007795.1 RefSeq gene 14722 15417 . + . ID=gene-SAOUHSC_00010;Dbxref=GeneID:3919183;Name=SAOUHSC_00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00010 +NC_007795.1 RefSeq CDS 14722 15417 . + 0 ID=cds-YP_498618.1;Parent=gene-SAOUHSC_00010;Dbxref=Genbank:YP_498618.1,GeneID:3919183;Name=YP_498618.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498618.1;transl_table=11 +NC_007795.1 RefSeq gene 15414 15743 . + . ID=gene-SAOUHSC_00012;Dbxref=GeneID:3919184;Name=SAOUHSC_00012;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00012 +NC_007795.1 RefSeq CDS 15414 15743 . + 0 ID=cds-YP_498619.1;Parent=gene-SAOUHSC_00012;Dbxref=Genbank:YP_498619.1,GeneID:3919184;Name=YP_498619.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498619.1;transl_table=11 +NC_007795.1 RefSeq gene 16106 17074 . + . ID=gene-SAOUHSC_00013;Dbxref=GeneID:3919185;Name=SAOUHSC_00013;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00013 +NC_007795.1 RefSeq CDS 16106 17074 . + 0 ID=cds-YP_498620.1;Parent=gene-SAOUHSC_00013;Dbxref=Genbank:YP_498620.1,GeneID:3919185;Name=YP_498620.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498620.1;transl_table=11 +NC_007795.1 RefSeq gene 17365 18303 . + . ID=gene-SAOUHSC_00014;Dbxref=GeneID:3919186;Name=SAOUHSC_00014;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00014 +NC_007795.1 RefSeq CDS 17365 18303 . + 0 ID=cds-YP_498621.1;Parent=gene-SAOUHSC_00014;Dbxref=Genbank:YP_498621.1,GeneID:3919186;Name=YP_498621.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498621.1;transl_table=11 +NC_007795.1 RefSeq gene 18318 20285 . + . ID=gene-SAOUHSC_00015;Dbxref=GeneID:3919187;Name=SAOUHSC_00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00015 +NC_007795.1 RefSeq CDS 18318 20285 . + 0 ID=cds-YP_498622.1;Parent=gene-SAOUHSC_00015;Dbxref=Genbank:YP_498622.1,GeneID:3919187;Name=YP_498622.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498622.1;transl_table=11 +NC_007795.1 RefSeq gene 20282 20734 . + . ID=gene-SAOUHSC_00017;Dbxref=GeneID:3919188;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=SAOUHSC_00017 +NC_007795.1 RefSeq CDS 20282 20734 . + 0 ID=cds-YP_498623.1;Parent=gene-SAOUHSC_00017;Dbxref=Genbank:YP_498623.1,GeneID:3919188;Name=YP_498623.1;Note=in Escherichia coli this protein is wrapped around the base of the L1 stalk;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=YP_498623.1;transl_table=11 +NC_007795.1 RefSeq gene 20766 22166 . + . ID=gene-SAOUHSC_00018;Dbxref=GeneID:3919189;Name=SAOUHSC_00018;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00018 +NC_007795.1 RefSeq CDS 20766 22166 . + 0 ID=cds-YP_498624.1;Parent=gene-SAOUHSC_00018;Dbxref=Genbank:YP_498624.1,GeneID:3919189;Name=YP_498624.1;Note=replicative DNA helicase;gbkey=CDS;product=replicative DNA helicase;protein_id=YP_498624.1;transl_table=11 +NC_007795.1 RefSeq gene 22444 23727 . + . ID=gene-SAOUHSC_00019;Dbxref=GeneID:3919190;Name=SAOUHSC_00019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00019 +NC_007795.1 RefSeq CDS 22444 23727 . + 0 ID=cds-YP_498625.1;Parent=gene-SAOUHSC_00019;Dbxref=Genbank:YP_498625.1,GeneID:3919190;Name=YP_498625.1;Note=catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis;gbkey=CDS;product=adenylosuccinate synthetase;protein_id=YP_498625.1;transl_table=11 +NC_007795.1 RefSeq gene 24157 24231 . + . ID=gene-SAOUHSC_T00018;Dbxref=GeneID:3921337;Name=SAOUHSC_T00018;gbkey=Gene;gene_biotype=tRNA;locus_tag=SAOUHSC_T00018 +NC_007795.1 RefSeq tRNA 24157 24231 . + . ID=rna-SAOUHSC_T00018;Parent=gene-SAOUHSC_T00018;Dbxref=GeneID:3921337;Note=tRNA-Glu-1;gbkey=tRNA;product=tRNA-Glu +NC_007795.1 RefSeq exon 24157 24231 . + . ID=exon-SAOUHSC_T00018-1;Parent=rna-SAOUHSC_T00018;Dbxref=GeneID:3921337;Note=tRNA-Glu-1;gbkey=tRNA;product=tRNA-Glu +NC_007795.1 RefSeq gene 24239 24311 . + . ID=gene-SAOUHSC_T00011;Dbxref=GeneID:3921330;Name=SAOUHSC_T00011;gbkey=Gene;gene_biotype=tRNA;locus_tag=SAOUHSC_T00011 +NC_007795.1 RefSeq tRNA 24239 24311 . + . ID=rna-SAOUHSC_T00011;Parent=gene-SAOUHSC_T00011;Dbxref=GeneID:3921330;Note=tRNA-Asp-1;gbkey=tRNA;product=tRNA-Asp +NC_007795.1 RefSeq exon 24239 24311 . + . ID=exon-SAOUHSC_T00011-1;Parent=rna-SAOUHSC_T00011;Dbxref=GeneID:3921330;Note=tRNA-Asp-1;gbkey=tRNA;product=tRNA-Asp +NC_007795.1 RefSeq gene 24931 25632 . + . ID=gene-SAOUHSC_00020;Dbxref=GeneID:3919191;Name=SAOUHSC_00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00020 +NC_007795.1 RefSeq CDS 24931 25632 . + 0 ID=cds-YP_498626.1;Parent=gene-SAOUHSC_00020;Dbxref=Genbank:YP_498626.1,GeneID:3919191;Name=YP_498626.1;Note=two-component response regulator%2C putative;gbkey=CDS;product=two-component response regulator;protein_id=YP_498626.1;transl_table=11 +NC_007795.1 RefSeq gene 25645 27471 . + . ID=gene-SAOUHSC_00021;Dbxref=GeneID:3919192;Name=SAOUHSC_00021;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00021 +NC_007795.1 RefSeq CDS 25645 27471 . + 0 ID=cds-YP_498627.1;Parent=gene-SAOUHSC_00021;Dbxref=Genbank:YP_498627.1,GeneID:3919192;Name=YP_498627.1;Note=sensory box histidine kinase VicK%2C putative;gbkey=CDS;product=sensory box histidine kinase VicK;protein_id=YP_498627.1;transl_table=11 +NC_007795.1 RefSeq gene 27515 28798 . + . ID=gene-SAOUHSC_00022;Dbxref=GeneID:3919193;Name=SAOUHSC_00022;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00022 +NC_007795.1 RefSeq CDS 27515 28798 . + 0 ID=cds-YP_498628.1;Parent=gene-SAOUHSC_00022;Dbxref=Genbank:YP_498628.1,GeneID:3919193;Name=YP_498628.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498628.1;transl_table=11 +NC_007795.1 RefSeq gene 28799 29587 . + . ID=gene-SAOUHSC_00023;Dbxref=GeneID:3919194;Name=SAOUHSC_00023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00023 +NC_007795.1 RefSeq CDS 28799 29587 . + 0 ID=cds-YP_498629.1;Parent=gene-SAOUHSC_00023;Dbxref=Genbank:YP_498629.1,GeneID:3919194;Name=YP_498629.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498629.1;transl_table=11 +NC_007795.1 RefSeq gene 29977 30777 . + . ID=gene-SAOUHSC_00024;Dbxref=GeneID:3919195;Name=SAOUHSC_00024;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00024 +NC_007795.1 RefSeq CDS 29977 30777 . + 0 ID=cds-YP_498630.1;Parent=gene-SAOUHSC_00024;Dbxref=Genbank:YP_498630.1,GeneID:3919195;Name=YP_498630.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498630.1;transl_table=11 +NC_007795.1 RefSeq gene 31005 33323 . + . ID=gene-SAOUHSC_00025;Dbxref=GeneID:3919293;Name=SAOUHSC_00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00025 +NC_007795.1 RefSeq CDS 31005 33323 . + 0 ID=cds-YP_498631.1;Parent=gene-SAOUHSC_00025;Dbxref=Genbank:YP_498631.1,GeneID:3919293;Name=YP_498631.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498631.1;transl_table=11 +NC_007795.1 RefSeq gene 33555 34034 . - . ID=gene-SAOUHSC_00026;Dbxref=GeneID:3919294;Name=SAOUHSC_00026;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00026 +NC_007795.1 RefSeq CDS 33555 34034 . - 0 ID=cds-YP_498632.1;Parent=gene-SAOUHSC_00026;Dbxref=Genbank:YP_498632.1,GeneID:3919294;Name=YP_498632.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498632.1;transl_table=11 +NC_007795.1 RefSeq gene 33691 34170 . + . ID=gene-SAOUHSC_00027;Dbxref=GeneID:3919295;Name=SAOUHSC_00027;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00027 +NC_007795.1 RefSeq CDS 33691 34170 . + 0 ID=cds-YP_498633.1;Parent=gene-SAOUHSC_00027;Dbxref=Genbank:YP_498633.1,GeneID:3919295;Name=YP_498633.1;Note=SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA;gbkey=CDS;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=YP_498633.1;transl_table=11 +NC_007795.1 RefSeq gene 34375 34509 . - . ID=gene-SAOUHSC_00028;Dbxref=GeneID:3919296;Name=SAOUHSC_00028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00028 +NC_007795.1 RefSeq CDS 34375 34509 . - 0 ID=cds-YP_498634.1;Parent=gene-SAOUHSC_00028;Dbxref=Genbank:YP_498634.1,GeneID:3919296;Name=YP_498634.1;gbkey=CDS;product=hypothetical protein;protein_id=YP_498634.1;transl_table=11 +NC_007795.1 RefSeq gene 34473 34565 . + . ID=gene-SAOUHSC_00029;Dbxref=GeneID:3919297;Name=SAOUHSC_00029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00029 +NC_007795.1 RefSeq CDS 34473 34565 . + 0 ID=cds-YP_498635.1;Parent=gene-SAOUHSC_00029;Dbxref=Genbank:YP_498635.1,GeneID:3919297;Name=YP_498635.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498635.1;transl_table=11 +NC_007795.1 RefSeq gene 34712 36457 . + . ID=gene-SAOUHSC_00030;Dbxref=GeneID:3919298;Name=SAOUHSC_00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00030 +NC_007795.1 RefSeq CDS 34712 36457 . + 0 ID=cds-YP_498636.1;Parent=gene-SAOUHSC_00030;Dbxref=Genbank:YP_498636.1,GeneID:3919298;Name=YP_498636.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498636.1;transl_table=11 +NC_007795.1 RefSeq gene 36551 37003 . - . ID=gene-SAOUHSC_00031;Dbxref=GeneID:3919299;Name=SAOUHSC_00031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00031 +NC_007795.1 RefSeq CDS 36551 37003 . - 0 ID=cds-YP_498637.1;Parent=gene-SAOUHSC_00031;Dbxref=Genbank:YP_498637.1,GeneID:3919299;Name=YP_498637.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498637.1;transl_table=11 +NC_007795.1 RefSeq gene 37019 37120 . - . ID=gene-SAOUHSC_00032;Dbxref=GeneID:3919300;Name=SAOUHSC_00032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00032 +NC_007795.1 RefSeq CDS 37019 37120 . - 0 ID=cds-YP_498638.1;Parent=gene-SAOUHSC_00032;Dbxref=Genbank:YP_498638.1,GeneID:3919300;Name=YP_498638.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498638.1;transl_table=11 +NC_007795.1 RefSeq gene 37218 37973 . - . ID=gene-SAOUHSC_00033;Dbxref=GeneID:3919301;Name=SAOUHSC_00033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00033 +NC_007795.1 RefSeq CDS 37218 37973 . - 0 ID=cds-YP_498639.1;Parent=gene-SAOUHSC_00033;Dbxref=Genbank:YP_498639.1,GeneID:3919301;Name=YP_498639.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498639.1;transl_table=11 +NC_007795.1 RefSeq gene 37973 38233 . - . ID=gene-SAOUHSC_00034;Dbxref=GeneID:3919302;Name=SAOUHSC_00034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00034 +NC_007795.1 RefSeq CDS 37973 38233 . - 0 ID=cds-YP_498640.1;Parent=gene-SAOUHSC_00034;Dbxref=Genbank:YP_498640.1,GeneID:3919302;Name=YP_498640.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498640.1;transl_table=11 +NC_007795.1 RefSeq gene 38370 39437 . + . ID=gene-SAOUHSC_00035;Dbxref=GeneID:3919303;Name=SAOUHSC_00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00035 +NC_007795.1 RefSeq CDS 38370 39437 . + 0 ID=cds-YP_498641.1;Parent=gene-SAOUHSC_00035;Dbxref=Genbank:YP_498641.1,GeneID:3919303;Name=YP_498641.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498641.1;transl_table=11 +NC_007795.1 RefSeq gene 39468 40802 . + . ID=gene-SAOUHSC_00036;Dbxref=GeneID:3919304;Name=SAOUHSC_00036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00036 +NC_007795.1 RefSeq CDS 39468 40802 . + 0 ID=cds-YP_498642.1;Parent=gene-SAOUHSC_00036;Dbxref=Genbank:YP_498642.1,GeneID:3919304;Name=YP_498642.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498642.1;transl_table=11 +NC_007795.1 RefSeq gene 40821 42014 . + . ID=gene-SAOUHSC_00037;Dbxref=GeneID:3919305;Name=SAOUHSC_00037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00037 +NC_007795.1 RefSeq CDS 40821 42014 . + 0 ID=cds-YP_498643.1;Parent=gene-SAOUHSC_00037;Dbxref=Genbank:YP_498643.1,GeneID:3919305;Name=YP_498643.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498643.1;transl_table=11 +NC_007795.1 RefSeq gene 42281 42382 . - . ID=gene-SAOUHSC_00038;Dbxref=GeneID:3919306;Name=SAOUHSC_00038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00038 +NC_007795.1 RefSeq CDS 42281 42382 . - 0 ID=cds-YP_498644.1;Parent=gene-SAOUHSC_00038;Dbxref=Genbank:YP_498644.1,GeneID:3919306;Name=YP_498644.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498644.1;transl_table=11 +NC_007795.1 RefSeq gene 42681 43613 . - . ID=gene-SAOUHSC_00039;Dbxref=GeneID:3919307;Name=SAOUHSC_00039;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00039 +NC_007795.1 RefSeq CDS 42681 43613 . - 0 ID=cds-YP_498645.1;Parent=gene-SAOUHSC_00039;Dbxref=Genbank:YP_498645.1,GeneID:3919307;Name=YP_498645.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498645.1;transl_table=11 +NC_007795.1 RefSeq gene 43976 44179 . + . ID=gene-SAOUHSC_00040;Dbxref=GeneID:3919308;Name=SAOUHSC_00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00040 +NC_007795.1 RefSeq CDS 43976 44179 . + 0 ID=cds-YP_498646.1;Parent=gene-SAOUHSC_00040;Dbxref=Genbank:YP_498646.1,GeneID:3919308;Name=YP_498646.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498646.1;transl_table=11 +NC_007795.1 RefSeq gene 44228 44524 . + . ID=gene-SAOUHSC_00041;Dbxref=GeneID:3919309;Name=SAOUHSC_00041;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00041 +NC_007795.1 RefSeq CDS 44228 44524 . + 0 ID=cds-YP_498647.1;Parent=gene-SAOUHSC_00041;Dbxref=Genbank:YP_498647.1,GeneID:3919309;Name=YP_498647.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498647.1;transl_table=11 +NC_007795.1 RefSeq gene 44596 45816 . - . ID=gene-SAOUHSC_00042;Dbxref=GeneID:3919310;Name=SAOUHSC_00042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00042 +NC_007795.1 RefSeq CDS 44596 45816 . - 0 ID=cds-YP_498648.1;Parent=gene-SAOUHSC_00042;Dbxref=Genbank:YP_498648.1,GeneID:3919310;Name=YP_498648.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498648.1;transl_table=11 +NC_007795.1 RefSeq gene 45809 46360 . - . ID=gene-SAOUHSC_00043;Dbxref=GeneID:3919311;Name=SAOUHSC_00043;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00043 +NC_007795.1 RefSeq CDS 45809 46360 . - 0 ID=cds-YP_498649.1;Parent=gene-SAOUHSC_00043;Dbxref=Genbank:YP_498649.1,GeneID:3919311;Name=YP_498649.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498649.1;transl_table=11 +NC_007795.1 RefSeq gene 46473 47333 . + . ID=gene-SAOUHSC_00044;Dbxref=GeneID:3919077;Name=SAOUHSC_00044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00044 +NC_007795.1 RefSeq CDS 46473 47333 . + 0 ID=cds-YP_498650.1;Parent=gene-SAOUHSC_00044;Dbxref=Genbank:YP_498650.1,GeneID:3919077;Name=YP_498650.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498650.1;transl_table=11 +NC_007795.1 RefSeq gene 47689 48222 . - . ID=gene-SAOUHSC_00045;Dbxref=GeneID:3919078;Name=SAOUHSC_00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00045 +NC_007795.1 RefSeq CDS 47689 48222 . - 0 ID=cds-YP_498651.1;Parent=gene-SAOUHSC_00045;Dbxref=Genbank:YP_498651.1,GeneID:3919078;Name=YP_498651.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498651.1;transl_table=11 +NC_007795.1 RefSeq gene 48313 49056 . + . ID=gene-SAOUHSC_00046;Dbxref=GeneID:3919079;Name=SAOUHSC_00046;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00046 +NC_007795.1 RefSeq CDS 48313 49056 . + 0 ID=cds-YP_498652.1;Parent=gene-SAOUHSC_00046;Dbxref=Genbank:YP_498652.1,GeneID:3919079;Name=YP_498652.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498652.1;transl_table=11 +NC_007795.1 RefSeq gene 49490 50092 . + . ID=gene-SAOUHSC_00047;Dbxref=GeneID:3919080;Name=SAOUHSC_00047;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00047 +NC_007795.1 RefSeq CDS 49490 50092 . + 0 ID=cds-YP_498653.1;Parent=gene-SAOUHSC_00047;Dbxref=Genbank:YP_498653.1,GeneID:3919080;Name=YP_498653.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498653.1;transl_table=11 +NC_007795.1 RefSeq gene 50359 53511 . + . ID=gene-SAOUHSC_00049;Dbxref=GeneID:3919081;Name=SAOUHSC_00049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00049 +NC_007795.1 RefSeq CDS 50359 53511 . + 0 ID=cds-YP_498654.1;Parent=gene-SAOUHSC_00049;Dbxref=Genbank:YP_498654.1,GeneID:3919081;Name=YP_498654.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498654.1;transl_table=11 +NC_007795.1 RefSeq gene 53568 54050 . + . ID=gene-SAOUHSC_00050;Dbxref=GeneID:3919082;Name=SAOUHSC_00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00050 +NC_007795.1 RefSeq CDS 53568 54050 . + 0 ID=cds-YP_498655.1;Parent=gene-SAOUHSC_00050;Dbxref=Genbank:YP_498655.1,GeneID:3919082;Name=YP_498655.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498655.1;transl_table=11 +NC_007795.1 RefSeq gene 54255 55241 . + . ID=gene-SAOUHSC_00051;Dbxref=GeneID:3919083;Name=SAOUHSC_00051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00051 +NC_007795.1 RefSeq CDS 54255 55241 . + 0 ID=cds-YP_498656.1;Parent=gene-SAOUHSC_00051;Dbxref=Genbank:YP_498656.1,GeneID:3919083;Name=YP_498656.1;Note=1-phosphatidylinositol phosphodiesterase precursor%2C putative;gbkey=CDS;product=1-phosphatidylinositol phosphodiesterase;protein_id=YP_498656.1;transl_table=11 +NC_007795.1 RefSeq gene 55462 56232 . + . ID=gene-SAOUHSC_00052;Dbxref=GeneID:3919084;Name=SAOUHSC_00052;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00052 +NC_007795.1 RefSeq CDS 55462 56232 . + 0 ID=cds-YP_498657.1;Parent=gene-SAOUHSC_00052;Dbxref=Genbank:YP_498657.1,GeneID:3919084;Name=YP_498657.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498657.1;transl_table=11 +NC_007795.1 RefSeq gene 56284 57054 . + . ID=gene-SAOUHSC_00053;Dbxref=GeneID:3919085;Name=SAOUHSC_00053;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00053 +NC_007795.1 RefSeq CDS 56284 57054 . + 0 ID=cds-YP_498658.1;Parent=gene-SAOUHSC_00053;Dbxref=Genbank:YP_498658.1,GeneID:3919085;Name=YP_498658.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498658.1;transl_table=11 +NC_007795.1 RefSeq gene 57118 57888 . + . ID=gene-SAOUHSC_00054;Dbxref=GeneID:3919086;Name=SAOUHSC_00054;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00054 +NC_007795.1 RefSeq CDS 57118 57888 . + 0 ID=cds-YP_498659.1;Parent=gene-SAOUHSC_00054;Dbxref=Genbank:YP_498659.1,GeneID:3919086;Name=YP_498659.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498659.1;transl_table=11 +NC_007795.1 RefSeq gene 57955 58722 . + . ID=gene-SAOUHSC_00055;Dbxref=GeneID:3919087;Name=SAOUHSC_00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00055 +NC_007795.1 RefSeq CDS 57955 58722 . + 0 ID=cds-YP_498660.1;Parent=gene-SAOUHSC_00055;Dbxref=Genbank:YP_498660.1,GeneID:3919087;Name=YP_498660.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498660.1;transl_table=11 +NC_007795.1 RefSeq gene 58855 61053 . + . ID=gene-SAOUHSC_00056;Dbxref=GeneID:3919088;Name=SAOUHSC_00056;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00056 +NC_007795.1 RefSeq CDS 58855 61053 . + 0 ID=cds-YP_498661.1;Parent=gene-SAOUHSC_00056;Dbxref=Genbank:YP_498661.1,GeneID:3919088;Name=YP_498661.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498661.1;transl_table=11 +NC_007795.1 RefSeq gene 61204 62382 . + . ID=gene-SAOUHSC_00057;Dbxref=GeneID:3919089;Name=SAOUHSC_00057;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00057 +NC_007795.1 RefSeq CDS 61204 62382 . + 0 ID=cds-YP_498662.1;Parent=gene-SAOUHSC_00057;Dbxref=Genbank:YP_498662.1,GeneID:3919089;Name=YP_498662.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498662.1;transl_table=11 +NC_007795.1 RefSeq gene 62384 63772 . + . ID=gene-SAOUHSC_00058;Dbxref=GeneID:3919090;Name=SAOUHSC_00058;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00058 +NC_007795.1 RefSeq CDS 62384 63772 . + 0 ID=cds-YP_498663.1;Parent=gene-SAOUHSC_00058;Dbxref=Genbank:YP_498663.1,GeneID:3919090;Name=YP_498663.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498663.1;transl_table=11 +NC_007795.1 RefSeq gene 64265 65926 . - . ID=gene-SAOUHSC_00060;Dbxref=GeneID:3919091;Name=SAOUHSC_00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00060 +NC_007795.1 RefSeq CDS 64265 65926 . - 0 ID=cds-YP_498664.1;Parent=gene-SAOUHSC_00060;Dbxref=Genbank:YP_498664.1,GeneID:3919091;Name=YP_498664.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498664.1;transl_table=11 +NC_007795.1 RefSeq gene 66252 68027 . - . ID=gene-SAOUHSC_00061;Dbxref=GeneID:3919092;Name=SAOUHSC_00061;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00061 +NC_007795.1 RefSeq CDS 66252 68027 . - 0 ID=cds-YP_498665.1;Parent=gene-SAOUHSC_00061;Dbxref=Genbank:YP_498665.1,GeneID:3919092;Name=YP_498665.1;Note=in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever;gbkey=CDS;product=myosin-cross-reactive antigen;protein_id=YP_498665.1;transl_table=11 +NC_007795.1 RefSeq gene 68201 69073 . - . ID=gene-SAOUHSC_00062;Dbxref=GeneID:3919093;Name=SAOUHSC_00062;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00062 +NC_007795.1 RefSeq CDS 68201 69073 . - 0 ID=cds-YP_498666.1;Parent=gene-SAOUHSC_00062;Dbxref=Genbank:YP_498666.1,GeneID:3919093;Name=YP_498666.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498666.1;transl_table=11 +NC_007795.1 RefSeq gene 69186 70583 . + . ID=gene-SAOUHSC_00064;Dbxref=GeneID:3919094;Name=SAOUHSC_00064;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00064 +NC_007795.1 RefSeq CDS 69186 70583 . + 0 ID=cds-YP_498667.1;Parent=gene-SAOUHSC_00064;Dbxref=Genbank:YP_498667.1,GeneID:3919094;Name=YP_498667.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498667.1;transl_table=11 +NC_007795.1 RefSeq gene 70773 71246 . + . ID=gene-SAOUHSC_00065;Dbxref=GeneID:3919095;Name=SAOUHSC_00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00065 +NC_007795.1 RefSeq CDS 70773 71246 . + 0 ID=cds-YP_498668.1;Parent=gene-SAOUHSC_00065;Dbxref=Genbank:YP_498668.1,GeneID:3919095;Name=YP_498668.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498668.1;transl_table=11 +NC_007795.1 RefSeq gene 71508 73100 . + . ID=gene-SAOUHSC_00067;Dbxref=GeneID:3919096;Name=SAOUHSC_00067;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00067 +NC_007795.1 RefSeq CDS 71508 73100 . + 0 ID=cds-YP_498669.1;Parent=gene-SAOUHSC_00067;Dbxref=Genbank:YP_498669.1,GeneID:3919096;Name=YP_498669.1;Note=L-lactate permease;gbkey=CDS;product=L-lactate permease;protein_id=YP_498669.1;transl_table=11 +NC_007795.1 RefSeq gene 73429 74979 . - . ID=gene-SAOUHSC_00069;Dbxref=GeneID:3919448;Name=SAOUHSC_00069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00069 +NC_007795.1 RefSeq CDS 73429 74979 . - 0 ID=cds-YP_498670.1;Parent=gene-SAOUHSC_00069;Dbxref=Genbank:YP_498670.1,GeneID:3919448;Name=YP_498670.1;Note=protein A;gbkey=CDS;product=protein A;protein_id=YP_498670.1;transl_table=11 +NC_007795.1 RefSeq gene 75400 76152 . - . ID=gene-SAOUHSC_00070;Dbxref=GeneID:3919449;Name=SAOUHSC_00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00070 +NC_007795.1 RefSeq CDS 75400 76152 . - 0 ID=cds-YP_498671.1;Parent=gene-SAOUHSC_00070;Dbxref=Genbank:YP_498671.1,GeneID:3919449;Name=YP_498671.1;Note=staphylococcal accessory regulator-like protein;gbkey=CDS;product=accessory regulator-like protein;protein_id=YP_498671.1;transl_table=11 +NC_007795.1 RefSeq gene 76521 77435 . - . ID=gene-SAOUHSC_00071;Dbxref=GeneID:3919450;Name=SAOUHSC_00071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00071 +NC_007795.1 RefSeq CDS 76521 77435 . - 0 ID=cds-YP_498672.1;Parent=gene-SAOUHSC_00071;Dbxref=Genbank:YP_498672.1,GeneID:3919450;Name=YP_498672.1;Note=lipoprotein%2C SirC%2C putative;gbkey=CDS;product=lipoprotein SirC;protein_id=YP_498672.1;transl_table=11 +NC_007795.1 RefSeq gene 77516 78511 . - . ID=gene-SAOUHSC_00072;Dbxref=GeneID:3919451;Name=SAOUHSC_00072;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00072 +NC_007795.1 RefSeq CDS 77516 78511 . - 0 ID=cds-YP_498673.1;Parent=gene-SAOUHSC_00072;Dbxref=Genbank:YP_498673.1,GeneID:3919451;Name=YP_498673.1;Note=lipoprotein%2C SirB%2C putative;gbkey=CDS;product=lipoprotein SirB;protein_id=YP_498673.1;transl_table=11 +NC_007795.1 RefSeq gene 78527 79519 . - . ID=gene-SAOUHSC_00074;Dbxref=GeneID:3919452;Name=SAOUHSC_00074;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00074 +NC_007795.1 RefSeq CDS 78527 79519 . - 0 ID=cds-YP_498674.1;Parent=gene-SAOUHSC_00074;Dbxref=Genbank:YP_498674.1,GeneID:3919452;Name=YP_498674.1;Note=periplasmic binding protein%2C putative;gbkey=CDS;product=periplasmic binding protein;protein_id=YP_498674.1;transl_table=11 +NC_007795.1 RefSeq gene 79885 80730 . + . ID=gene-SAOUHSC_00075;Dbxref=GeneID:3919453;Name=SAOUHSC_00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00075 +NC_007795.1 RefSeq CDS 79885 80730 . + 0 ID=cds-YP_498675.1;Parent=gene-SAOUHSC_00075;Dbxref=Genbank:YP_498675.1,GeneID:3919453;Name=YP_498675.1;Note=conserved hypothetical protein;gbkey=CDS;product=2%2C3-diaminopropionate biosynthesis protein SbnA;protein_id=YP_498675.1;transl_table=11 +NC_007795.1 RefSeq gene 80727 81737 . + . ID=gene-SAOUHSC_00076;Dbxref=GeneID:3919454;Name=SAOUHSC_00076;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00076 +NC_007795.1 RefSeq CDS 80727 81737 . + 0 ID=cds-YP_498676.1;Parent=gene-SAOUHSC_00076;Dbxref=Genbank:YP_498676.1,GeneID:3919454;Name=YP_498676.1;Note=ornithine cyclodeaminase%2C putative;gbkey=CDS;product=2%2C3-diaminopropionate biosynthesis protein SbnB;protein_id=YP_498676.1;transl_table=11 +NC_007795.1 RefSeq gene 81758 83512 . + . ID=gene-SAOUHSC_00077;Dbxref=GeneID:3919455;Name=SAOUHSC_00077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00077 +NC_007795.1 RefSeq CDS 81758 83512 . + 0 ID=cds-YP_498677.1;Parent=gene-SAOUHSC_00077;Dbxref=Genbank:YP_498677.1,GeneID:3919455;Name=YP_498677.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498677.1;transl_table=11 +NC_007795.1 RefSeq gene 83505 84761 . + . ID=gene-SAOUHSC_00078;Dbxref=GeneID:3919456;Name=SAOUHSC_00078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00078 +NC_007795.1 RefSeq CDS 83505 84761 . + 0 ID=cds-YP_498678.1;Parent=gene-SAOUHSC_00078;Dbxref=Genbank:YP_498678.1,GeneID:3919456;Name=YP_498678.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498678.1;transl_table=11 +NC_007795.1 RefSeq gene 84751 86487 . + . ID=gene-SAOUHSC_00079;Dbxref=GeneID:3919457;Name=SAOUHSC_00079;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00079 +NC_007795.1 RefSeq CDS 84751 86487 . + 0 ID=cds-YP_498679.1;Parent=gene-SAOUHSC_00079;Dbxref=Genbank:YP_498679.1,GeneID:3919457;Name=YP_498679.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498679.1;transl_table=11 +NC_007795.1 RefSeq gene 86396 88246 . + . ID=gene-SAOUHSC_00080;Dbxref=GeneID:3919458;Name=SAOUHSC_00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00080 +NC_007795.1 RefSeq CDS 86396 88246 . + 0 ID=cds-YP_498680.1;Parent=gene-SAOUHSC_00080;Dbxref=Genbank:YP_498680.1,GeneID:3919458;Name=YP_498680.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498680.1;transl_table=11 +NC_007795.1 RefSeq gene 88221 88997 . + . ID=gene-SAOUHSC_00081;Dbxref=GeneID:3919459;Name=SAOUHSC_00081;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00081 +NC_007795.1 RefSeq CDS 88221 88997 . + 0 ID=cds-YP_498681.1;Parent=gene-SAOUHSC_00081;Dbxref=Genbank:YP_498681.1,GeneID:3919459;Name=YP_498681.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498681.1;transl_table=11 +NC_007795.1 RefSeq gene 88997 90199 . + . ID=gene-SAOUHSC_00082;Dbxref=GeneID:3919460;Name=SAOUHSC_00082;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00082 +NC_007795.1 RefSeq CDS 88997 90199 . + 0 ID=cds-YP_498682.1;Parent=gene-SAOUHSC_00082;Dbxref=Genbank:YP_498682.1,GeneID:3919460;Name=YP_498682.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498682.1;transl_table=11 +NC_007795.1 RefSeq gene 90203 90967 . + . ID=gene-SAOUHSC_00083;Dbxref=GeneID:3919461;Name=SAOUHSC_00083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00083 +NC_007795.1 RefSeq CDS 90203 90967 . + 0 ID=cds-YP_498683.1;Parent=gene-SAOUHSC_00083;Dbxref=Genbank:YP_498683.1,GeneID:3919461;Name=YP_498683.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498683.1;transl_table=11 +NC_007795.1 RefSeq gene 91163 91570 . + . ID=gene-SAOUHSC_00084;Dbxref=GeneID:3919462;Name=SAOUHSC_00084;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00084 +NC_007795.1 RefSeq CDS 91163 91570 . + 0 ID=cds-YP_498685.1;Parent=gene-SAOUHSC_00084;Dbxref=Genbank:YP_498685.1,GeneID:3919462;Name=YP_498685.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498685.1;transl_table=11 +NC_007795.1 RefSeq gene 91620 92246 . + . ID=gene-SAOUHSC_00085;Dbxref=GeneID:3919463;Name=SAOUHSC_00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00085 +NC_007795.1 RefSeq CDS 91620 92246 . + 0 ID=cds-YP_498686.1;Parent=gene-SAOUHSC_00085;Dbxref=Genbank:YP_498686.1,GeneID:3919463;Name=YP_498686.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498686.1;transl_table=11 +NC_007795.1 RefSeq gene 92458 93234 . + . ID=gene-SAOUHSC_00086;Dbxref=GeneID:3919464;Name=SAOUHSC_00086;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00086 +NC_007795.1 RefSeq CDS 92458 93234 . + 0 ID=cds-YP_498687.1;Parent=gene-SAOUHSC_00086;Dbxref=Genbank:YP_498687.1,GeneID:3919464;Name=YP_498687.1;Note=3-ketoacyl-acyl carrier protein reductase%2C putative;gbkey=CDS;product=acetoin reductase;protein_id=YP_498687.1;transl_table=11 +NC_007795.1 RefSeq gene 93378 93500 . + . ID=gene-SAOUHSC_00087;Dbxref=GeneID:3919465;Name=SAOUHSC_00087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00087 +NC_007795.1 RefSeq CDS 93378 93500 . + 0 ID=cds-YP_498688.1;Parent=gene-SAOUHSC_00087;Dbxref=Genbank:YP_498688.1,GeneID:3919465;Name=YP_498688.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498688.1;transl_table=11 +NC_007795.1 RefSeq gene 93570 94550 . + . ID=gene-SAOUHSC_00088;Dbxref=GeneID:3919466;Name=SAOUHSC_00088;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00088 +NC_007795.1 RefSeq CDS 93570 94550 . + 0 ID=cds-YP_498689.1;Parent=gene-SAOUHSC_00088;Dbxref=Genbank:YP_498689.1,GeneID:3919466;Name=YP_498689.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498689.1;transl_table=11 +NC_007795.1 RefSeq gene 94513 95205 . + . ID=gene-SAOUHSC_00089;Dbxref=GeneID:3919800;Name=SAOUHSC_00089;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00089 +NC_007795.1 RefSeq CDS 94513 95205 . + 0 ID=cds-YP_498690.1;Parent=gene-SAOUHSC_00089;Dbxref=Genbank:YP_498690.1,GeneID:3919800;Name=YP_498690.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498690.1;transl_table=11 +NC_007795.1 RefSeq gene 95415 96581 . + . ID=gene-SAOUHSC_00090;Dbxref=GeneID:3919801;Name=SAOUHSC_00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00090 +NC_007795.1 RefSeq CDS 95415 96581 . + 0 ID=cds-YP_498691.1;Parent=gene-SAOUHSC_00090;Dbxref=Genbank:YP_498691.1,GeneID:3919801;Name=YP_498691.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498691.1;transl_table=11 +NC_007795.1 RefSeq gene 96562 97800 . + . ID=gene-SAOUHSC_00091;Dbxref=GeneID:3919802;Name=SAOUHSC_00091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00091 +NC_007795.1 RefSeq CDS 96562 97800 . + 0 ID=cds-YP_498692.1;Parent=gene-SAOUHSC_00091;Dbxref=Genbank:YP_498692.1,GeneID:3919802;Name=YP_498692.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498692.1;transl_table=11 +NC_007795.1 RefSeq gene 97790 99220 . + . ID=gene-SAOUHSC_00092;Dbxref=GeneID:3919803;Name=SAOUHSC_00092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00092 +NC_007795.1 RefSeq CDS 97790 99220 . + 0 ID=cds-YP_498693.1;Parent=gene-SAOUHSC_00092;Dbxref=Genbank:YP_498693.1,GeneID:3919803;Name=YP_498693.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498693.1;transl_table=11 +NC_007795.1 RefSeq gene 99488 100087 . + . ID=gene-SAOUHSC_00093;Dbxref=GeneID:3919804;Name=SAOUHSC_00093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00093 +NC_007795.1 RefSeq CDS 99488 100087 . + 0 ID=cds-YP_498694.1;Parent=gene-SAOUHSC_00093;Dbxref=Genbank:YP_498694.1,GeneID:3919804;Name=YP_498694.1;Note=superoxide dismutase%2C putative;gbkey=CDS;product=superoxide dismutase;protein_id=YP_498694.1;transl_table=11 +NC_007795.1 RefSeq gene 100455 101054 . + . ID=gene-SAOUHSC_00094;Dbxref=GeneID:3919805;Name=SAOUHSC_00094;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00094 +NC_007795.1 RefSeq CDS 100455 101054 . + 0 ID=cds-YP_498695.1;Parent=gene-SAOUHSC_00094;Dbxref=Genbank:YP_498695.1,GeneID:3919805;Name=YP_498695.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498695.1;transl_table=11 +NC_007795.1 RefSeq gene 101370 102125 . - . ID=gene-SAOUHSC_00096;Dbxref=GeneID:3919806;Name=SAOUHSC_00096;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00096 +NC_007795.1 RefSeq CDS 101370 102125 . - 0 ID=cds-YP_498696.1;Parent=gene-SAOUHSC_00096;Dbxref=Genbank:YP_498696.1,GeneID:3919806;Name=YP_498696.1;Note=transcriptional regulator%2C GntR family%2C putative;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=YP_498696.1;transl_table=11 +NC_007795.1 RefSeq gene 102361 103068 . + . ID=gene-SAOUHSC_00097;Dbxref=GeneID:3919807;Name=SAOUHSC_00097;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00097 +NC_007795.1 RefSeq CDS 102361 103068 . + 0 ID=cds-YP_498698.1;Parent=gene-SAOUHSC_00097;Dbxref=Genbank:YP_498698.1,GeneID:3919807;Name=YP_498698.1;Note=catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate;gbkey=CDS;product=purine nucleoside phosphorylase;protein_id=YP_498698.1;transl_table=11 +NC_007795.1 RefSeq gene 103075 104427 . + . ID=gene-SAOUHSC_00099;Dbxref=GeneID:3919808;Name=SAOUHSC_00099;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00099 +NC_007795.1 RefSeq CDS 103075 104427 . + 0 ID=cds-YP_498699.1;Parent=gene-SAOUHSC_00099;Dbxref=Genbank:YP_498699.1,GeneID:3919808;Name=YP_498699.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498699.1;transl_table=11 +NC_007795.1 RefSeq gene 104508 105170 . + . ID=gene-SAOUHSC_00100;Dbxref=GeneID:3919809;Name=SAOUHSC_00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00100 +NC_007795.1 RefSeq CDS 104508 105170 . + 0 ID=cds-YP_498700.1;Parent=gene-SAOUHSC_00100;Dbxref=Genbank:YP_498700.1,GeneID:3919809;Name=YP_498700.1;Note=catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate;gbkey=CDS;product=2-deoxyribose-5-phosphate aldolase;protein_id=YP_498700.1;transl_table=11 +NC_007795.1 RefSeq gene 105198 106376 . + . ID=gene-SAOUHSC_00101;Dbxref=GeneID:3919810;Name=SAOUHSC_00101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00101 +NC_007795.1 RefSeq CDS 105198 106376 . + 0 ID=cds-YP_498701.1;Parent=gene-SAOUHSC_00101;Dbxref=Genbank:YP_498701.1,GeneID:3919810;Name=YP_498701.1;Note=catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose;gbkey=CDS;product=phosphopentomutase;protein_id=YP_498701.1;transl_table=11 +NC_007795.1 RefSeq gene 106507 107322 . - . ID=gene-SAOUHSC_00102;Dbxref=GeneID:3919811;Name=SAOUHSC_00102;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00102 +NC_007795.1 RefSeq CDS 106507 107322 . - 0 ID=cds-YP_498702.1;Parent=gene-SAOUHSC_00102;Dbxref=Genbank:YP_498702.1,GeneID:3919811;Name=YP_498702.1;Note=phosphonates ABC transporter%2C permease protein CC0363%2C putative;gbkey=CDS;product=phosphonates ABC transporter permease;protein_id=YP_498702.1;transl_table=11 +NC_007795.1 RefSeq gene 107319 108119 . - . ID=gene-SAOUHSC_00103;Dbxref=GeneID:3919812;Name=SAOUHSC_00103;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00103 +NC_007795.1 RefSeq CDS 107319 108119 . - 0 ID=cds-YP_498703.1;Parent=gene-SAOUHSC_00103;Dbxref=Genbank:YP_498703.1,GeneID:3919812;Name=YP_498703.1;Note=phosphonates ABC transporter%2C permease protein CC0363%2C putative;gbkey=CDS;product=phosphonates ABC transporter permease;protein_id=YP_498703.1;transl_table=11 +NC_007795.1 RefSeq gene 108121 108894 . - . ID=gene-SAOUHSC_00104;Dbxref=GeneID:3919813;Name=SAOUHSC_00104;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00104 +NC_007795.1 RefSeq CDS 108121 108894 . - 0 ID=cds-YP_498704.1;Parent=gene-SAOUHSC_00104;Dbxref=Genbank:YP_498704.1,GeneID:3919813;Name=YP_498704.1;Note=amino acid ABC transporter%2C ATP-binding protein%2C putative;gbkey=CDS;product=amino acid ABC transporter ATP-binding protein;protein_id=YP_498704.1;transl_table=11 +NC_007795.1 RefSeq gene 109108 110064 . - . ID=gene-SAOUHSC_00105;Dbxref=GeneID:3919814;Name=SAOUHSC_00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00105 +NC_007795.1 RefSeq CDS 109108 110064 . - 0 ID=cds-YP_498705.1;Parent=gene-SAOUHSC_00105;Dbxref=Genbank:YP_498705.1,GeneID:3919814;Name=YP_498705.1;Note=phosphonate ABC transporter%2C substrate-binding protein%2C putative;gbkey=CDS;product=phosphonate ABC transporter substrate-binding protein;protein_id=YP_498705.1;transl_table=11 +NC_007795.1 RefSeq gene 110293 111837 . + . ID=gene-SAOUHSC_00106;Dbxref=GeneID:3919815;Name=SAOUHSC_00106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00106 +NC_007795.1 RefSeq CDS 110293 111837 . + 0 ID=cds-YP_498706.1;Parent=gene-SAOUHSC_00106;Dbxref=Genbank:YP_498706.1,GeneID:3919815;Name=YP_498706.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498706.1;transl_table=11 +NC_007795.1 RefSeq gene 111888 113423 . + . ID=gene-SAOUHSC_00107;Dbxref=GeneID:3919816;Name=SAOUHSC_00107;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00107 +NC_007795.1 RefSeq CDS 111888 113423 . + 0 ID=cds-YP_498707.1;Parent=gene-SAOUHSC_00107;Dbxref=Genbank:YP_498707.1,GeneID:3919816;Name=YP_498707.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498707.1;transl_table=11 +NC_007795.1 RefSeq gene 113507 113710 . + . ID=gene-SAOUHSC_00108;Dbxref=GeneID:3919817;Name=SAOUHSC_00108;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00108 +NC_007795.1 RefSeq CDS 113507 113710 . + 0 ID=cds-YP_498708.1;Parent=gene-SAOUHSC_00108;Dbxref=Genbank:YP_498708.1,GeneID:3919817;Name=YP_498708.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498708.1;transl_table=11 +NC_007795.1 RefSeq gene 114083 114568 . + . ID=gene-SAOUHSC_00109;Dbxref=GeneID:3919818;Name=SAOUHSC_00109;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00109 +NC_007795.1 RefSeq CDS 114083 114568 . + 0 ID=cds-YP_498709.1;Parent=gene-SAOUHSC_00109;Dbxref=Genbank:YP_498709.1,GeneID:3919818;Name=YP_498709.1;Note=replication initiation protein%2C putative;gbkey=CDS;product=replication initiation protein;protein_id=YP_498709.1;transl_table=11 +NC_007795.1 RefSeq gene 114927 115214 . + . ID=gene-SAOUHSC_00111;Dbxref=GeneID:3919820;Name=SAOUHSC_00111;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00111 +NC_007795.1 RefSeq CDS 114927 115214 . + 0 ID=cds-YP_498711.1;Parent=gene-SAOUHSC_00111;Dbxref=Genbank:YP_498711.1,GeneID:3919820;Name=YP_498711.1;gbkey=CDS;product=hypothetical protein;protein_id=YP_498711.1;transl_table=11 +NC_007795.1 RefSeq pseudogene 115796 116088 . + . ID=gene-SAOUHSC_00112;Dbxref=GeneID:3919821;Name=SAOUHSC_00112;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SAOUHSC_00112;pseudo=true;pseudogene=unknown +NC_007795.1 RefSeq gene 116538 119147 . + . ID=gene-SAOUHSC_00113;Dbxref=GeneID:3919822;Name=SAOUHSC_00113;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00113 +NC_007795.1 RefSeq CDS 116538 119147 . + 0 ID=cds-YP_498713.1;Parent=gene-SAOUHSC_00113;Dbxref=Genbank:YP_498713.1,GeneID:3919822;Name=YP_498713.1;Note=alcohol dehydrogenase%2C iron-containing%2C putative;gbkey=CDS;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;protein_id=YP_498713.1;transl_table=11 +NC_007795.1 RefSeq gene 119492 120160 . + . ID=gene-SAOUHSC_00114;Dbxref=GeneID:3919823;Name=SAOUHSC_00114;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00114 +NC_007795.1 RefSeq CDS 119492 120160 . + 0 ID=cds-YP_498714.1;Parent=gene-SAOUHSC_00114;Dbxref=Genbank:YP_498714.1,GeneID:3919823;Name=YP_498714.1;Note=capsular polysaccharide biosynthesis protein%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein;protein_id=YP_498714.1;transl_table=11 +NC_007795.1 RefSeq gene 120176 120862 . + . ID=gene-SAOUHSC_00115;Dbxref=GeneID:3919824;Name=SAOUHSC_00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00115 +NC_007795.1 RefSeq CDS 120176 120862 . + 0 ID=cds-YP_498715.1;Parent=gene-SAOUHSC_00115;Dbxref=Genbank:YP_498715.1,GeneID:3919824;Name=YP_498715.1;Note=capsular polysaccharide synthesis enzyme Cap5B;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap5B;protein_id=YP_498715.1;transl_table=11 +NC_007795.1 RefSeq gene 120865 121629 . + . ID=gene-SAOUHSC_00116;Dbxref=GeneID:3919825;Name=SAOUHSC_00116;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00116 +NC_007795.1 RefSeq CDS 120865 121629 . + 0 ID=cds-YP_498716.1;Parent=gene-SAOUHSC_00116;Dbxref=Genbank:YP_498716.1,GeneID:3919825;Name=YP_498716.1;Note=capsular polysaccharide synthesis enzyme Cap8C;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap8C;protein_id=YP_498716.1;transl_table=11 +NC_007795.1 RefSeq gene 121649 123472 . + . ID=gene-SAOUHSC_00117;Dbxref=GeneID:3919826;Name=SAOUHSC_00117;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00117 +NC_007795.1 RefSeq CDS 121649 123472 . + 0 ID=cds-YP_498717.1;Parent=gene-SAOUHSC_00117;Dbxref=Genbank:YP_498717.1,GeneID:3919826;Name=YP_498717.1;Note=capsular polysaccharide biosynthesis protein Cap5D%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap5D;protein_id=YP_498717.1;transl_table=11 +NC_007795.1 RefSeq gene 123462 124490 . + . ID=gene-SAOUHSC_00118;Dbxref=GeneID:3919827;Name=SAOUHSC_00118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00118 +NC_007795.1 RefSeq CDS 123462 124490 . + 0 ID=cds-YP_498718.1;Parent=gene-SAOUHSC_00118;Dbxref=Genbank:YP_498718.1,GeneID:3919827;Name=YP_498718.1;Note=capsular polysaccharide biosynthesis protein Cap5E%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap5E;protein_id=YP_498718.1;transl_table=11 +NC_007795.1 RefSeq gene 124503 125612 . + . ID=gene-SAOUHSC_00119;Dbxref=GeneID:3919828;Name=SAOUHSC_00119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00119 +NC_007795.1 RefSeq CDS 124503 125612 . + 0 ID=cds-YP_498719.1;Parent=gene-SAOUHSC_00119;Dbxref=Genbank:YP_498719.1,GeneID:3919828;Name=YP_498719.1;Note=capsular polysaccharide synthesis enzyme Cap8F;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap8F;protein_id=YP_498719.1;transl_table=11 +NC_007795.1 RefSeq gene 125616 126740 . + . ID=gene-SAOUHSC_00120;Dbxref=GeneID:3919829;Name=SAOUHSC_00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00120 +NC_007795.1 RefSeq CDS 125616 126740 . + 0 ID=cds-YP_498720.1;Parent=gene-SAOUHSC_00120;Dbxref=Genbank:YP_498720.1,GeneID:3919829;Name=YP_498720.1;Note=UDP-N-acetylglucosamine 2-epimerase;gbkey=CDS;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=YP_498720.1;transl_table=11 +NC_007795.1 RefSeq gene 126743 127369 . + . ID=gene-SAOUHSC_00121;Dbxref=GeneID:3919830;Name=SAOUHSC_00121;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00121 +NC_007795.1 RefSeq CDS 126743 127369 . + 0 ID=cds-YP_498721.1;Parent=gene-SAOUHSC_00121;Dbxref=Genbank:YP_498721.1,GeneID:3919830;Name=YP_498721.1;Note=capsular polysaccharide synthesis enzyme O-acetyl transferase Cap5H%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein O-acetyl transferase Cap5H;protein_id=YP_498721.1;transl_table=11 +NC_007795.1 RefSeq gene 127374 128483 . + . ID=gene-SAOUHSC_00122;Dbxref=GeneID:3919831;Name=SAOUHSC_00122;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00122 +NC_007795.1 RefSeq CDS 127374 128483 . + 0 ID=cds-YP_498722.1;Parent=gene-SAOUHSC_00122;Dbxref=Genbank:YP_498722.1,GeneID:3919831;Name=YP_498722.1;Note=capsular polysaccharide biosynthesis protein Cap5I%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap5I;protein_id=YP_498722.1;transl_table=11 +NC_007795.1 RefSeq gene 128497 129663 . + . ID=gene-SAOUHSC_00123;Dbxref=GeneID:3919832;Name=SAOUHSC_00123;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00123 +NC_007795.1 RefSeq CDS 128497 129663 . + 0 ID=cds-YP_498723.1;Parent=gene-SAOUHSC_00123;Dbxref=Genbank:YP_498723.1,GeneID:3919832;Name=YP_498723.1;Note=capsular polysaccharide biosynthesis protein Cap5J%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap5J;protein_id=YP_498723.1;transl_table=11 +NC_007795.1 RefSeq gene 129656 130861 . + . ID=gene-SAOUHSC_00124;Dbxref=GeneID:3919833;Name=SAOUHSC_00124;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00124 +NC_007795.1 RefSeq CDS 129656 130861 . + 0 ID=cds-YP_498724.1;Parent=gene-SAOUHSC_00124;Dbxref=Genbank:YP_498724.1,GeneID:3919833;Name=YP_498724.1;Note=capsular polysaccharide biosynthesis protein Cap5K%2C putative;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap5K;protein_id=YP_498724.1;transl_table=11 +NC_007795.1 RefSeq gene 130862 132067 . + . ID=gene-SAOUHSC_00125;Dbxref=GeneID:3919834;Name=SAOUHSC_00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00125 +NC_007795.1 RefSeq CDS 130862 132067 . + 0 ID=cds-YP_498725.1;Parent=gene-SAOUHSC_00125;Dbxref=Genbank:YP_498725.1,GeneID:3919834;Name=YP_498725.1;Note=cap5L protein/glycosyltransferase%2C putative;gbkey=CDS;product=cap5L protein/glycosyltransferase;protein_id=YP_498725.1;transl_table=11 +NC_007795.1 RefSeq gene 132078 132635 . + . ID=gene-SAOUHSC_00126;Dbxref=GeneID:3919835;Name=SAOUHSC_00126;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00126 +NC_007795.1 RefSeq CDS 132078 132635 . + 0 ID=cds-YP_498726.1;Parent=gene-SAOUHSC_00126;Dbxref=Genbank:YP_498726.1,GeneID:3919835;Name=YP_498726.1;Note=capsular polysaccharide biosynthesis protein Cap8M;gbkey=CDS;product=capsular polysaccharide biosynthesis protein Cap8M;protein_id=YP_498726.1;transl_table=11 +NC_007795.1 RefSeq gene 132635 133522 . + . ID=gene-SAOUHSC_00127;Dbxref=GeneID:3919836;Name=SAOUHSC_00127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00127 +NC_007795.1 RefSeq CDS 132635 133522 . + 0 ID=cds-YP_498727.1;Parent=gene-SAOUHSC_00127;Dbxref=Genbank:YP_498727.1,GeneID:3919836;Name=YP_498727.1;Note=cap5N protein/UDP-glucose 4-epimerase%2C putative;gbkey=CDS;product=cap5N protein/UDP-glucose 4-epimerase;protein_id=YP_498727.1;transl_table=11 +NC_007795.1 RefSeq gene 133576 134838 . + . ID=gene-SAOUHSC_00128;Dbxref=GeneID:3919837;Name=SAOUHSC_00128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00128 +NC_007795.1 RefSeq CDS 133576 134838 . + 0 ID=cds-YP_498728.1;Parent=gene-SAOUHSC_00128;Dbxref=Genbank:YP_498728.1,GeneID:3919837;Name=YP_498728.1;Note=cap5O protein/UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase;gbkey=CDS;product=cap5O protein/UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase;protein_id=YP_498728.1;transl_table=11 +NC_007795.1 RefSeq gene 134915 136060 . + . ID=gene-SAOUHSC_00129;Dbxref=GeneID:3919838;Name=SAOUHSC_00129;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00129 +NC_007795.1 RefSeq CDS 134915 136060 . + 0 ID=cds-YP_498729.1;Parent=gene-SAOUHSC_00129;Dbxref=Genbank:YP_498729.1,GeneID:3919838;Name=YP_498729.1;Note=UDP-N-acetylglucosamine 2-epimerase;gbkey=CDS;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=YP_498729.1;transl_table=11 +NC_007795.1 RefSeq gene 136125 136451 . - . ID=gene-SAOUHSC_00130;Dbxref=GeneID:3919839;Name=SAOUHSC_00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00130 +NC_007795.1 RefSeq CDS 136125 136451 . - 0 ID=cds-YP_498730.1;Parent=gene-SAOUHSC_00130;Dbxref=Genbank:YP_498730.1,GeneID:3919839;Name=YP_498730.1;Note=iron regulated%3B catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source;gbkey=CDS;product=heme-degrading monooxygenase IsdI;protein_id=YP_498730.1;transl_table=11 +NC_007795.1 RefSeq gene 136458 136841 . - . ID=gene-SAOUHSC_00131;Dbxref=GeneID:3919840;Name=SAOUHSC_00131;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00131 +NC_007795.1 RefSeq CDS 136458 136841 . - 0 ID=cds-YP_498731.1;Parent=gene-SAOUHSC_00131;Dbxref=Genbank:YP_498731.1,GeneID:3919840;Name=YP_498731.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498731.1;transl_table=11 +NC_007795.1 RefSeq gene 137268 138755 . + . ID=gene-SAOUHSC_00132;Dbxref=GeneID:3919841;Name=SAOUHSC_00132;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00132 +NC_007795.1 RefSeq CDS 137268 138755 . + 0 ID=cds-YP_498732.1;Parent=gene-SAOUHSC_00132;Dbxref=Genbank:YP_498732.1,GeneID:3919841;Name=YP_498732.1;Note=aldehyde dehydrogenase%2C putative;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=YP_498732.1;transl_table=11 +NC_007795.1 RefSeq gene 139401 140360 . + . ID=gene-SAOUHSC_00133;Dbxref=GeneID:3919842;Name=SAOUHSC_00133;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00133 +NC_007795.1 RefSeq CDS 139401 140360 . + 0 ID=cds-YP_498733.1;Parent=gene-SAOUHSC_00133;Dbxref=Genbank:YP_498733.1,GeneID:3919842;Name=YP_498733.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498733.1;transl_table=11 +NC_007795.1 RefSeq gene 140422 140625 . - . ID=gene-SAOUHSC_00134;Dbxref=GeneID:3919843;Name=SAOUHSC_00134;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00134 +NC_007795.1 RefSeq CDS 140422 140625 . - 0 ID=cds-YP_498734.1;Parent=gene-SAOUHSC_00134;Dbxref=Genbank:YP_498734.1,GeneID:3919843;Name=YP_498734.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498734.1;transl_table=11 +NC_007795.1 RefSeq gene 140804 141316 . + . ID=gene-SAOUHSC_00135;Dbxref=GeneID:3919844;Name=SAOUHSC_00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00135 +NC_007795.1 RefSeq CDS 140804 141316 . + 0 ID=cds-YP_498735.1;Parent=gene-SAOUHSC_00135;Dbxref=Genbank:YP_498735.1,GeneID:3919844;Name=YP_498735.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498735.1;transl_table=11 +NC_007795.1 RefSeq gene 141658 142398 . + . ID=gene-SAOUHSC_00136;Dbxref=GeneID:3919845;Name=SAOUHSC_00136;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00136 +NC_007795.1 RefSeq CDS 141658 142398 . + 0 ID=cds-YP_498736.1;Parent=gene-SAOUHSC_00136;Dbxref=Genbank:YP_498736.1,GeneID:3919845;Name=YP_498736.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498736.1;transl_table=11 +NC_007795.1 RefSeq gene 142412 143386 . + . ID=gene-SAOUHSC_00137;Dbxref=GeneID:3919846;Name=SAOUHSC_00137;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00137 +NC_007795.1 RefSeq CDS 142412 143386 . + 0 ID=cds-YP_498737.1;Parent=gene-SAOUHSC_00137;Dbxref=Genbank:YP_498737.1,GeneID:3919846;Name=YP_498737.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498737.1;transl_table=11 +NC_007795.1 RefSeq gene 143383 144144 . + . ID=gene-SAOUHSC_00138;Dbxref=GeneID:3919847;Name=SAOUHSC_00138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00138 +NC_007795.1 RefSeq CDS 143383 144144 . + 0 ID=cds-YP_498738.1;Parent=gene-SAOUHSC_00138;Dbxref=Genbank:YP_498738.1,GeneID:3919847;Name=YP_498738.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498738.1;transl_table=11 +NC_007795.1 RefSeq gene 144157 145188 . + . ID=gene-SAOUHSC_00139;Dbxref=GeneID:3919848;Name=SAOUHSC_00139;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00139 +NC_007795.1 RefSeq CDS 144157 145188 . + 0 ID=cds-YP_498739.1;Parent=gene-SAOUHSC_00139;Dbxref=Genbank:YP_498739.1,GeneID:3919848;Name=YP_498739.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498739.1;transl_table=11 +NC_007795.1 RefSeq gene 145405 145764 . + . ID=gene-SAOUHSC_00141;Dbxref=GeneID:3919849;Name=SAOUHSC_00141;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00141 +NC_007795.1 RefSeq CDS 145405 145764 . + 0 ID=cds-YP_498740.1;Parent=gene-SAOUHSC_00141;Dbxref=Genbank:YP_498740.1,GeneID:3919849;Name=YP_498740.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498740.1;transl_table=11 +NC_007795.1 RefSeq gene 145937 146962 . + . ID=gene-SAOUHSC_00142;Dbxref=GeneID:3919850;Name=SAOUHSC_00142;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00142 +NC_007795.1 RefSeq CDS 145937 146962 . + 0 ID=cds-YP_498741.1;Parent=gene-SAOUHSC_00142;Dbxref=Genbank:YP_498741.1,GeneID:3919850;Name=YP_498741.1;Note=Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen%2C nitrate%2C sulphate or fumarate;gbkey=CDS;product=formate dehydrogenase;protein_id=YP_498741.1;transl_table=11 +NC_007795.1 RefSeq gene 147348 148598 . + . ID=gene-SAOUHSC_00143;Dbxref=GeneID:3919851;Name=SAOUHSC_00143;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00143 +NC_007795.1 RefSeq CDS 147348 148598 . + 0 ID=cds-YP_498742.1;Parent=gene-SAOUHSC_00143;Dbxref=Genbank:YP_498742.1,GeneID:3919851;Name=YP_498742.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498742.1;transl_table=11 +NC_007795.1 RefSeq gene 149045 156220 . + . ID=gene-SAOUHSC_00144;Dbxref=GeneID:3919852;Name=SAOUHSC_00144;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00144 +NC_007795.1 RefSeq CDS 149045 156220 . + 0 ID=cds-YP_498743.1;Parent=gene-SAOUHSC_00144;Dbxref=Genbank:YP_498743.1,GeneID:3919852;Name=YP_498743.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498743.1;transl_table=11 +NC_007795.1 RefSeq gene 156233 156877 . + . ID=gene-SAOUHSC_00145;Dbxref=GeneID:3919853;Name=SAOUHSC_00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00145 +NC_007795.1 RefSeq CDS 156233 156877 . + 0 ID=cds-YP_498744.1;Parent=gene-SAOUHSC_00145;Dbxref=Genbank:YP_498744.1,GeneID:3919853;Name=YP_498744.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498744.1;transl_table=11 +NC_007795.1 RefSeq gene 157205 157684 . - . ID=gene-SAOUHSC_00146;Dbxref=GeneID:3919854;Name=SAOUHSC_00146;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00146 +NC_007795.1 RefSeq CDS 157205 157684 . - 0 ID=cds-YP_498745.1;Parent=gene-SAOUHSC_00146;Dbxref=Genbank:YP_498745.1,GeneID:3919854;Name=YP_498745.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498745.1;transl_table=11 +NC_007795.1 RefSeq gene 157954 158718 . - . ID=gene-SAOUHSC_00147;Dbxref=GeneID:3919855;Name=SAOUHSC_00147;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00147 +NC_007795.1 RefSeq CDS 157954 158718 . - 0 ID=cds-YP_498746.1;Parent=gene-SAOUHSC_00147;Dbxref=Genbank:YP_498746.1,GeneID:3919855;Name=YP_498746.1;Note=acetylglutamate kinase%2C putative;gbkey=CDS;product=acetylglutamate kinase;protein_id=YP_498746.1;transl_table=11 +NC_007795.1 RefSeq gene 158734 159975 . - . ID=gene-SAOUHSC_00148;Dbxref=GeneID:3919856;Name=argJ;gbkey=Gene;gene=argJ;gene_biotype=protein_coding;locus_tag=SAOUHSC_00148 +NC_007795.1 RefSeq CDS 158734 159975 . - 0 ID=cds-YP_498747.1;Parent=gene-SAOUHSC_00148;Dbxref=Genbank:YP_498747.1,GeneID:3919856;Name=YP_498747.1;Note=bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate;gbkey=CDS;gene=argJ;product=bifunctional ornithine acetyltransferase/N-acetylglutamate synthase;protein_id=YP_498747.1;transl_table=11 +NC_007795.1 RefSeq gene 159987 161018 . - . ID=gene-SAOUHSC_00149;Dbxref=GeneID:3919857;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=SAOUHSC_00149 +NC_007795.1 RefSeq CDS 159987 161018 . - 0 ID=cds-YP_498748.1;Parent=gene-SAOUHSC_00149;Dbxref=Genbank:YP_498748.1,GeneID:3919857;Name=YP_498748.1;Note=catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate;gbkey=CDS;gene=argC;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=YP_498748.1;transl_table=11 +NC_007795.1 RefSeq gene 161057 162241 . - . ID=gene-SAOUHSC_00150;Dbxref=GeneID:3919858;Name=SAOUHSC_00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00150 +NC_007795.1 RefSeq CDS 161057 162241 . - 0 ID=cds-YP_498749.1;Parent=gene-SAOUHSC_00150;Dbxref=Genbank:YP_498749.1,GeneID:3919858;Name=YP_498749.1;Note=ornithine aminotransferase%2C putative;gbkey=CDS;product=ornithine aminotransferase;protein_id=YP_498749.1;transl_table=11 +NC_007795.1 RefSeq gene 162494 163849 . - . ID=gene-SAOUHSC_00151;Dbxref=GeneID:3919859;Name=SAOUHSC_00151;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00151 +NC_007795.1 RefSeq CDS 162494 163849 . - 0 ID=cds-YP_498750.1;Parent=gene-SAOUHSC_00151;Dbxref=Genbank:YP_498750.1,GeneID:3919859;Name=YP_498750.1;Note=branched-chain amino acid transport system II carrier protein;gbkey=CDS;product=branched-chain amino acid transport system II carrier protein;protein_id=YP_498750.1;transl_table=11 +NC_007795.1 RefSeq gene 164125 164622 . - . ID=gene-SAOUHSC_00152;Dbxref=GeneID:3919860;Name=SAOUHSC_00152;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00152 +NC_007795.1 RefSeq CDS 164125 164622 . - 0 ID=cds-YP_498751.1;Parent=gene-SAOUHSC_00152;Dbxref=Genbank:YP_498751.1,GeneID:3919860;Name=YP_498751.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498751.1;transl_table=11 +NC_007795.1 RefSeq gene 164749 166389 . - . ID=gene-SAOUHSC_00153;Dbxref=GeneID:3919861;Name=SAOUHSC_00153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00153 +NC_007795.1 RefSeq CDS 164749 166389 . - 0 ID=cds-YP_498752.1;Parent=gene-SAOUHSC_00153;Dbxref=Genbank:YP_498752.1,GeneID:3919861;Name=YP_498752.1;Note=indolepyruvate decarboxylase%2C putative;gbkey=CDS;product=indolepyruvate decarboxylase;protein_id=YP_498752.1;transl_table=11 +NC_007795.1 RefSeq gene 166583 166684 . + . ID=gene-SAOUHSC_00154;Dbxref=GeneID:3919862;Name=SAOUHSC_00154;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00154 +NC_007795.1 RefSeq CDS 166583 166684 . + 0 ID=cds-YP_498753.1;Parent=gene-SAOUHSC_00154;Dbxref=Genbank:YP_498753.1,GeneID:3919862;Name=YP_498753.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498753.1;transl_table=11 +NC_007795.1 RefSeq gene 166663 168660 . - . ID=gene-SAOUHSC_00155;Dbxref=GeneID:3919863;Name=SAOUHSC_00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00155 +NC_007795.1 RefSeq CDS 166663 168660 . - 0 ID=cds-YP_498754.1;Parent=gene-SAOUHSC_00155;Dbxref=Genbank:YP_498754.1,GeneID:3919863;Name=YP_498754.1;Note=PTS system%2C glucose-specific component;gbkey=CDS;product=PTS system glucose-specific protein;protein_id=YP_498754.1;transl_table=11 +NC_007795.1 RefSeq gene 169309 170349 . + . ID=gene-SAOUHSC_00156;Dbxref=GeneID:3919864;Name=SAOUHSC_00156;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00156 +NC_007795.1 RefSeq CDS 169309 170349 . + 0 ID=cds-YP_498755.1;Parent=gene-SAOUHSC_00156;Dbxref=Genbank:YP_498755.1,GeneID:3919864;Name=YP_498755.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498755.1;transl_table=11 +NC_007795.1 RefSeq gene 170349 171245 . + . ID=gene-SAOUHSC_00157;Dbxref=GeneID:3919865;Name=murQ;gbkey=Gene;gene=murQ;gene_biotype=protein_coding;gene_synonym=yfeU;locus_tag=SAOUHSC_00157 +NC_007795.1 RefSeq CDS 170349 171245 . + 0 ID=cds-YP_498756.1;Parent=gene-SAOUHSC_00157;Dbxref=Genbank:YP_498756.1,GeneID:3919865;Name=YP_498756.1;Note=catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway;gbkey=CDS;gene=murQ;product=N-acetylmuramic acid-6-phosphate etherase;protein_id=YP_498756.1;transl_table=11 +NC_007795.1 RefSeq gene 171257 172711 . + . ID=gene-SAOUHSC_00158;Dbxref=GeneID:3919866;Name=SAOUHSC_00158;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00158 +NC_007795.1 RefSeq CDS 171257 172711 . + 0 ID=cds-YP_498757.1;Parent=gene-SAOUHSC_00158;Dbxref=Genbank:YP_498757.1,GeneID:3919866;Name=YP_498757.1;Note=PTS system component;gbkey=CDS;product=PTS system transporter;protein_id=YP_498757.1;transl_table=11 +NC_007795.1 RefSeq gene 172714 173589 . + . ID=gene-SAOUHSC_00160;Dbxref=GeneID:3919867;Name=SAOUHSC_00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00160 +NC_007795.1 RefSeq CDS 172714 173589 . + 0 ID=cds-YP_498758.1;Parent=gene-SAOUHSC_00160;Dbxref=Genbank:YP_498758.1,GeneID:3919867;Name=YP_498758.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498758.1;transl_table=11 +NC_007795.1 RefSeq gene 173783 174064 . - . ID=gene-SAOUHSC_00161;Dbxref=GeneID:3919868;Name=SAOUHSC_00161;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00161 +NC_007795.1 RefSeq CDS 173783 174064 . - 0 ID=cds-YP_498759.1;Parent=gene-SAOUHSC_00161;Dbxref=Genbank:YP_498759.1,GeneID:3919868;Name=YP_498759.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498759.1;transl_table=11 +NC_007795.1 RefSeq gene 174277 177066 . + . ID=gene-SAOUHSC_00162;Dbxref=GeneID:3919869;Name=SAOUHSC_00162;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00162 +NC_007795.1 RefSeq CDS 174277 177066 . + 0 ID=cds-YP_498760.1;Parent=gene-SAOUHSC_00162;Dbxref=REBASE:Sau8325ORF162P,Genbank:YP_498760.1,GeneID:3919869;Name=YP_498760.1;Note=type I site-specific deoxyribonuclease%2C HsdR family%2C putative;gbkey=CDS;product=HsdR family type I site-specific deoxyribonuclease;protein_id=YP_498760.1;transl_table=11 +NC_007795.1 RefSeq gene 177271 178113 . + . ID=gene-SAOUHSC_00163;Dbxref=GeneID:3919870;Name=SAOUHSC_00163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00163 +NC_007795.1 RefSeq CDS 177271 178113 . + 0 ID=cds-YP_498761.1;Parent=gene-SAOUHSC_00163;Dbxref=Genbank:YP_498761.1,GeneID:3919870;Name=YP_498761.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498761.1;transl_table=11 +NC_007795.1 RefSeq gene 178115 179038 . + . ID=gene-SAOUHSC_00164;Dbxref=GeneID:3919871;Name=SAOUHSC_00164;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00164 +NC_007795.1 RefSeq CDS 178115 179038 . + 0 ID=cds-YP_498762.1;Parent=gene-SAOUHSC_00164;Dbxref=Genbank:YP_498762.1,GeneID:3919871;Name=YP_498762.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498762.1;transl_table=11 +NC_007795.1 RefSeq gene 179025 180137 . + . ID=gene-SAOUHSC_00166;Dbxref=GeneID:3919872;Name=SAOUHSC_00166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00166 +NC_007795.1 RefSeq CDS 179025 180137 . + 0 ID=cds-YP_498763.1;Parent=gene-SAOUHSC_00166;Dbxref=Genbank:YP_498763.1,GeneID:3919872;Name=YP_498763.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498763.1;transl_table=11 +NC_007795.1 RefSeq gene 180402 181994 . - . ID=gene-SAOUHSC_00167;Dbxref=GeneID:3919873;Name=SAOUHSC_00167;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00167 +NC_007795.1 RefSeq CDS 180402 181994 . - 0 ID=cds-YP_498764.1;Parent=gene-SAOUHSC_00167;Dbxref=Genbank:YP_498764.1,GeneID:3919873;Name=YP_498764.1;Note=peptide ABC transporter%2C ATP-binding protein%2C putative;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=YP_498764.1;transl_table=11 +NC_007795.1 RefSeq gene 181951 183429 . + . ID=gene-SAOUHSC_00168;Dbxref=GeneID:3919874;Name=SAOUHSC_00168;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00168 +NC_007795.1 RefSeq CDS 181951 183429 . + 0 ID=cds-YP_498765.1;Parent=gene-SAOUHSC_00168;Dbxref=Genbank:YP_498765.1,GeneID:3919874;Name=YP_498765.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498765.1;transl_table=11 +NC_007795.1 RefSeq gene 183435 184598 . + . ID=gene-SAOUHSC_00169;Dbxref=GeneID:3919875;Name=SAOUHSC_00169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00169 +NC_007795.1 RefSeq CDS 183435 184598 . + 0 ID=cds-YP_498766.1;Parent=gene-SAOUHSC_00169;Dbxref=Genbank:YP_498766.1,GeneID:3919875;Name=YP_498766.1;Note=peptide ABC transporter%2C permease protein%2C putative;gbkey=CDS;product=peptide ABC transporter permease;protein_id=YP_498766.1;transl_table=11 +NC_007795.1 RefSeq gene 184615 186390 . + . ID=gene-SAOUHSC_00170;Dbxref=GeneID:3919876;Name=SAOUHSC_00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00170 +NC_007795.1 RefSeq CDS 184615 186390 . + 0 ID=cds-YP_498767.1;Parent=gene-SAOUHSC_00170;Dbxref=Genbank:YP_498767.1,GeneID:3919876;Name=YP_498767.1;Note=conserved hypothetical protein;gbkey=CDS;product=RGD-containing lipoprotein;protein_id=YP_498767.1;transl_table=11 +NC_007795.1 RefSeq gene 186428 188434 . + . ID=gene-SAOUHSC_00171;Dbxref=GeneID:3919877;Name=SAOUHSC_00171;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00171 +NC_007795.1 RefSeq CDS 186428 188434 . + 0 ID=cds-YP_498768.1;Parent=gene-SAOUHSC_00171;Dbxref=Genbank:YP_498768.1,GeneID:3919877;Name=YP_498768.1;Note=gamma-glutamyltranspeptidase%2C putative;gbkey=CDS;product=gamma-glutamyltranspeptidase;protein_id=YP_498768.1;transl_table=11 +NC_007795.1 RefSeq gene 188732 189505 . - . ID=gene-SAOUHSC_00172;Dbxref=GeneID:3919486;Name=SAOUHSC_00172;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00172 +NC_007795.1 RefSeq CDS 188732 189505 . - 0 ID=cds-YP_498769.1;Parent=gene-SAOUHSC_00172;Dbxref=Genbank:YP_498769.1,GeneID:3919486;Name=YP_498769.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498769.1;transl_table=11 +NC_007795.1 RefSeq gene 189695 190321 . - . ID=gene-SAOUHSC_00173;Dbxref=GeneID:3919487;Name=SAOUHSC_00173;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00173 +NC_007795.1 RefSeq CDS 189695 190321 . - 0 ID=cds-YP_498770.1;Parent=gene-SAOUHSC_00173;Dbxref=Genbank:YP_498770.1,GeneID:3919487;Name=YP_498770.1;Note=FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds;gbkey=CDS;product=azoreductase;protein_id=YP_498770.1;transl_table=11 +NC_007795.1 RefSeq gene 190530 191108 . + . ID=gene-SAOUHSC_00174;Dbxref=GeneID:3919488;Name=SAOUHSC_00174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00174 +NC_007795.1 RefSeq CDS 190530 191108 . + 0 ID=cds-YP_498771.1;Parent=gene-SAOUHSC_00174;Dbxref=Genbank:YP_498771.1,GeneID:3919488;Name=YP_498771.1;Note=M23/M37 peptidase domain protein;gbkey=CDS;product=M23/M37 peptidase domain-containing protein;protein_id=YP_498771.1;transl_table=11 +NC_007795.1 RefSeq gene 191491 192588 . + . ID=gene-SAOUHSC_00175;Dbxref=GeneID:3919489;Name=SAOUHSC_00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00175 +NC_007795.1 RefSeq CDS 191491 192588 . + 0 ID=cds-YP_498772.1;Parent=gene-SAOUHSC_00175;Dbxref=Genbank:YP_498772.1,GeneID:3919489;Name=YP_498772.1;Note=multiple sugar-binding transport ATP-binding protein%2C putative;gbkey=CDS;product=multiple sugar-binding transport ATP-binding protein;protein_id=YP_498772.1;transl_table=11 +NC_007795.1 RefSeq gene 192601 193872 . + . ID=gene-SAOUHSC_00176;Dbxref=GeneID:3919490;Name=SAOUHSC_00176;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00176 +NC_007795.1 RefSeq CDS 192601 193872 . + 0 ID=cds-YP_498773.1;Parent=gene-SAOUHSC_00176;Dbxref=Genbank:YP_498773.1,GeneID:3919490;Name=YP_498773.1;Note=bacterial extracellular solute-binding protein%2C putative;gbkey=CDS;product=extracellular solute-binding protein;protein_id=YP_498773.1;transl_table=11 +NC_007795.1 RefSeq gene 193875 195143 . + . ID=gene-SAOUHSC_00177;Dbxref=GeneID:3919491;Name=SAOUHSC_00177;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00177 +NC_007795.1 RefSeq CDS 193875 195143 . + 0 ID=cds-YP_498774.1;Parent=gene-SAOUHSC_00177;Dbxref=Genbank:YP_498774.1,GeneID:3919491;Name=YP_498774.1;Note=maltose ABC transporter%2C permease protein%2C putative;gbkey=CDS;product=maltose ABC transporter permease;protein_id=YP_498774.1;transl_table=11 +NC_007795.1 RefSeq gene 195145 195984 . + . ID=gene-SAOUHSC_00178;Dbxref=GeneID:3919492;Name=SAOUHSC_00178;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00178 +NC_007795.1 RefSeq CDS 195145 195984 . + 0 ID=cds-YP_498775.1;Parent=gene-SAOUHSC_00178;Dbxref=Genbank:YP_498775.1,GeneID:3919492;Name=YP_498775.1;Note=maltose ABC transporter%2C permease protein;gbkey=CDS;product=maltose ABC transporter permease;protein_id=YP_498775.1;transl_table=11 +NC_007795.1 RefSeq gene 196058 197134 . + . ID=gene-SAOUHSC_00179;Dbxref=GeneID:3919493;Name=SAOUHSC_00179;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00179 +NC_007795.1 RefSeq CDS 196058 197134 . + 0 ID=cds-YP_498776.1;Parent=gene-SAOUHSC_00179;Dbxref=Genbank:YP_498776.1,GeneID:3919493;Name=YP_498776.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498776.1;transl_table=11 +NC_007795.1 RefSeq gene 197159 198199 . + . ID=gene-SAOUHSC_00180;Dbxref=GeneID:3919494;Name=SAOUHSC_00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00180 +NC_007795.1 RefSeq CDS 197159 198199 . + 0 ID=cds-YP_498777.1;Parent=gene-SAOUHSC_00180;Dbxref=Genbank:YP_498777.1,GeneID:3919494;Name=YP_498777.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498777.1;transl_table=11 +NC_007795.1 RefSeq gene 198254 199222 . + . ID=gene-SAOUHSC_00181;Dbxref=GeneID:3919495;Name=SAOUHSC_00181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00181 +NC_007795.1 RefSeq CDS 198254 199222 . + 0 ID=cds-YP_498778.1;Parent=gene-SAOUHSC_00181;Dbxref=Genbank:YP_498778.1,GeneID:3919495;Name=YP_498778.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498778.1;transl_table=11 +NC_007795.1 RefSeq gene 199583 200155 . - . ID=gene-SAOUHSC_00182;Dbxref=GeneID:3919496;Name=SAOUHSC_00182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00182 +NC_007795.1 RefSeq CDS 199583 200155 . - 0 ID=cds-YP_498779.1;Parent=gene-SAOUHSC_00182;Dbxref=Genbank:YP_498779.1,GeneID:3919496;Name=YP_498779.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498779.1;transl_table=11 +NC_007795.1 RefSeq gene 200310 201689 . + . ID=gene-SAOUHSC_00183;Dbxref=GeneID:3919497;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=SAOUHSC_00183 +NC_007795.1 RefSeq CDS 200310 201689 . + 0 ID=cds-YP_498780.1;Parent=gene-SAOUHSC_00183;Dbxref=Genbank:YP_498780.1,GeneID:3919497;Name=YP_498780.1;Note=cytoplasmic membrane protein that functions as a monomer%3B catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate;gbkey=CDS;gene=uhpT;product=sugar phosphate antiporter;protein_id=YP_498780.1;transl_table=11 +NC_007795.1 RefSeq gene 202048 202806 . - . ID=gene-SAOUHSC_00184;Dbxref=GeneID:3919498;Name=SAOUHSC_00184;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00184 +NC_007795.1 RefSeq CDS 202048 202806 . - 0 ID=cds-YP_498781.1;Parent=gene-SAOUHSC_00184;Dbxref=Genbank:YP_498781.1,GeneID:3919498;Name=YP_498781.1;Note=Response regulator receiver domain protein;gbkey=CDS;product=response regulator receiver domain-containing protein;protein_id=YP_498781.1;transl_table=11 +NC_007795.1 RefSeq gene 202799 204355 . - . ID=gene-SAOUHSC_00185;Dbxref=GeneID:3919499;Name=SAOUHSC_00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00185 +NC_007795.1 RefSeq CDS 202799 204355 . - 0 ID=cds-YP_498782.1;Parent=gene-SAOUHSC_00185;Dbxref=Genbank:YP_498782.1,GeneID:3919499;Name=YP_498782.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498782.1;transl_table=11 +NC_007795.1 RefSeq gene 204352 205320 . - . ID=gene-SAOUHSC_00186;Dbxref=GeneID:3919500;Name=SAOUHSC_00186;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00186 +NC_007795.1 RefSeq CDS 204352 205320 . - 0 ID=cds-YP_498783.1;Parent=gene-SAOUHSC_00186;Dbxref=Genbank:YP_498783.1,GeneID:3919500;Name=YP_498783.1;Note=lipoprotein%2C putative;gbkey=CDS;product=lipoprotein;protein_id=YP_498783.1;transl_table=11 +NC_007795.1 RefSeq gene 205908 208157 . + . ID=gene-SAOUHSC_00187;Dbxref=GeneID:3919501;Name=SAOUHSC_00187;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00187 +NC_007795.1 RefSeq CDS 205908 208157 . + 0 ID=cds-YP_498784.1;Parent=gene-SAOUHSC_00187;Dbxref=Genbank:YP_498784.1,GeneID:3919501;Name=YP_498784.1;Note=formate acetyltransferase;gbkey=CDS;product=formate acetyltransferase;protein_id=YP_498784.1;transl_table=11 +NC_007795.1 RefSeq gene 208180 208935 . + . ID=gene-SAOUHSC_00188;Dbxref=GeneID:3919502;Name=SAOUHSC_00188;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00188 +NC_007795.1 RefSeq CDS 208180 208935 . + 0 ID=cds-YP_498785.1;Parent=gene-SAOUHSC_00188;Dbxref=Genbank:YP_498785.1,GeneID:3919502;Name=YP_498785.1;Note=pyruvate formate-lyase 1 activating enzyme%2C putative;gbkey=CDS;product=pyruvate formate-lyase 1 activating enzyme;protein_id=YP_498785.1;transl_table=11 +NC_007795.1 RefSeq pseudogene 208925 209233 . + . ID=gene-SAOUHSC_00189;Dbxref=GeneID:3919503;Name=SAOUHSC_00189;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SAOUHSC_00189;pseudo=true;pseudogene=unknown +NC_007795.1 RefSeq gene 209271 211034 . + . ID=gene-SAOUHSC_00190;Dbxref=GeneID:3919504;Name=SAOUHSC_00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00190 +NC_007795.1 RefSeq CDS 209271 211034 . + 0 ID=cds-YP_498787.1;Parent=gene-SAOUHSC_00190;Dbxref=Genbank:YP_498787.1,GeneID:3919504;Name=YP_498787.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498787.1;transl_table=11 +NC_007795.1 RefSeq gene 211198 211542 . - . ID=gene-SAOUHSC_00191;Dbxref=GeneID:3919505;Name=SAOUHSC_00191;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00191 +NC_007795.1 RefSeq CDS 211198 211542 . - 0 ID=cds-YP_498788.1;Parent=gene-SAOUHSC_00191;Dbxref=Genbank:YP_498788.1,GeneID:3919505;Name=YP_498788.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498788.1;transl_table=11 +NC_007795.1 RefSeq gene 211732 213642 . + . ID=gene-SAOUHSC_00192;Dbxref=GeneID:3920348;Name=SAOUHSC_00192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00192 +NC_007795.1 RefSeq CDS 211732 213642 . + 0 ID=cds-YP_498789.1;Parent=gene-SAOUHSC_00192;Dbxref=Genbank:YP_498789.1,GeneID:3920348;Name=YP_498789.1;Note=coagulase;gbkey=CDS;product=staphylocoagulase;protein_id=YP_498789.1;transl_table=11 +NC_007795.1 RefSeq gene 213824 213931 . - . ID=gene-SAOUHSC_00193;Dbxref=GeneID:3920349;Name=SAOUHSC_00193;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00193 +NC_007795.1 RefSeq CDS 213824 213931 . - 0 ID=cds-YP_498790.1;Parent=gene-SAOUHSC_00193;Dbxref=Genbank:YP_498790.1,GeneID:3920349;Name=YP_498790.1;gbkey=CDS;product=hypothetical protein;protein_id=YP_498790.1;transl_table=11 +NC_007795.1 RefSeq gene 214246 215430 . - . ID=gene-SAOUHSC_00195;Dbxref=GeneID:3920351;Name=SAOUHSC_00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00195 +NC_007795.1 RefSeq CDS 214246 215430 . - 0 ID=cds-YP_498792.1;Parent=gene-SAOUHSC_00195;Dbxref=Genbank:YP_498792.1,GeneID:3920351;Name=YP_498792.1;Note=acetyl-CoA acetyltransferase%2C putative;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=YP_498792.1;transl_table=11 +NC_007795.1 RefSeq gene 215460 217721 . - . ID=gene-SAOUHSC_00196;Dbxref=GeneID:3920352;Name=SAOUHSC_00196;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00196 +NC_007795.1 RefSeq CDS 215460 217721 . - 0 ID=cds-YP_498793.1;Parent=gene-SAOUHSC_00196;Dbxref=Genbank:YP_498793.1,GeneID:3920352;Name=YP_498793.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498793.1;transl_table=11 +NC_007795.1 RefSeq gene 217907 219118 . - . ID=gene-SAOUHSC_00197;Dbxref=GeneID:3920353;Name=SAOUHSC_00197;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00197 +NC_007795.1 RefSeq CDS 217907 219118 . - 0 ID=cds-YP_498794.1;Parent=gene-SAOUHSC_00197;Dbxref=Genbank:YP_498794.1,GeneID:3920353;Name=YP_498794.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498794.1;transl_table=11 +NC_007795.1 RefSeq gene 219230 220735 . - . ID=gene-SAOUHSC_00198;Dbxref=GeneID:3920354;Name=SAOUHSC_00198;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00198 +NC_007795.1 RefSeq CDS 219230 220735 . - 0 ID=cds-YP_498795.1;Parent=gene-SAOUHSC_00198;Dbxref=Genbank:YP_498795.1,GeneID:3920354;Name=YP_498795.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498795.1;transl_table=11 +NC_007795.1 RefSeq gene 220761 222338 . - . ID=gene-SAOUHSC_00199;Dbxref=GeneID:3920355;Name=SAOUHSC_00199;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00199 +NC_007795.1 RefSeq CDS 220761 222338 . - 0 ID=cds-YP_498796.1;Parent=gene-SAOUHSC_00199;Dbxref=Genbank:YP_498796.1,GeneID:3920355;Name=YP_498796.1;Note=conserved hypothetical protein;gbkey=CDS;product=acyl CoA:acetate/3-ketoacid CoA transferase;protein_id=YP_498796.1;transl_table=11 +NC_007795.1 RefSeq gene 222779 223921 . + . ID=gene-SAOUHSC_00200;Dbxref=GeneID:3920356;Name=SAOUHSC_00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00200 +NC_007795.1 RefSeq CDS 222779 223921 . + 0 ID=cds-YP_498797.1;Parent=gene-SAOUHSC_00200;Dbxref=Genbank:YP_498797.1,GeneID:3920356;Name=YP_498797.1;Note=membrane protein%2C putative;gbkey=CDS;product=hypothetical protein;protein_id=YP_498797.1;transl_table=11 +NC_007795.1 RefSeq gene 224235 225647 . - . ID=gene-SAOUHSC_00201;Dbxref=GeneID:3920357;Name=SAOUHSC_00201;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00201 +NC_007795.1 RefSeq CDS 224235 225647 . - 0 ID=cds-YP_498798.1;Parent=gene-SAOUHSC_00201;Dbxref=Genbank:YP_498798.1,GeneID:3920357;Name=YP_498798.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498798.1;transl_table=11 +NC_007795.1 RefSeq gene 225908 226264 . - . ID=gene-SAOUHSC_00202;Dbxref=GeneID:3920358;Name=SAOUHSC_00202;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00202 +NC_007795.1 RefSeq CDS 225908 226264 . - 0 ID=cds-YP_498799.1;Parent=gene-SAOUHSC_00202;Dbxref=Genbank:YP_498799.1,GeneID:3920358;Name=YP_498799.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498799.1;transl_table=11 +NC_007795.1 RefSeq gene 226421 226594 . - . ID=gene-SAOUHSC_00203;Dbxref=GeneID:3920359;Name=SAOUHSC_00203;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00203 +NC_007795.1 RefSeq CDS 226421 226594 . - 0 ID=cds-YP_498800.1;Parent=gene-SAOUHSC_00203;Dbxref=Genbank:YP_498800.1,GeneID:3920359;Name=YP_498800.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498800.1;transl_table=11 +NC_007795.1 RefSeq gene 226620 227765 . - . ID=gene-SAOUHSC_00204;Dbxref=GeneID:3920360;Name=SAOUHSC_00204;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00204 +NC_007795.1 RefSeq CDS 226620 227765 . - 0 ID=cds-YP_498801.1;Parent=gene-SAOUHSC_00204;Dbxref=Genbank:YP_498801.1,GeneID:3920360;Name=YP_498801.1;Note=Globin domain protein;gbkey=CDS;product=globin domain-containing protein;protein_id=YP_498801.1;transl_table=11 +NC_007795.1 RefSeq gene 227920 228027 . + . ID=gene-SAOUHSC_00205;Dbxref=GeneID:3920361;Name=SAOUHSC_00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00205 +NC_007795.1 RefSeq CDS 227920 228027 . + 0 ID=cds-YP_498802.1;Parent=gene-SAOUHSC_00205;Dbxref=Genbank:YP_498802.1,GeneID:3920361;Name=YP_498802.1;gbkey=CDS;product=hypothetical protein;protein_id=YP_498802.1;transl_table=11 +NC_007795.1 RefSeq gene 228482 229291 . + . ID=gene-SAOUHSC_00206;Dbxref=GeneID:3920362;Name=SAOUHSC_00206;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00206 +NC_007795.1 RefSeq CDS 228482 229291 . + 0 ID=cds-YP_498803.1;Parent=gene-SAOUHSC_00206;Dbxref=Genbank:YP_498803.1,GeneID:3920362;Name=YP_498803.1;Note=L-lactate dehydrogenase;gbkey=CDS;product=L-lactate dehydrogenase;protein_id=YP_498803.1;transl_table=11 +NC_007795.1 RefSeq gene 229502 229645 . + . ID=gene-SAOUHSC_00208;Dbxref=GeneID:3920363;Name=SAOUHSC_00208;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00208 +NC_007795.1 RefSeq CDS 229502 229645 . + 0 ID=cds-YP_498804.1;Parent=gene-SAOUHSC_00208;Dbxref=Genbank:YP_498804.1,GeneID:3920363;Name=YP_498804.1;gbkey=CDS;product=hypothetical protein;protein_id=YP_498804.1;transl_table=11 +NC_007795.1 RefSeq gene 229611 231140 . - . ID=gene-SAOUHSC_00209;Dbxref=GeneID:3920364;Name=SAOUHSC_00209;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00209 +NC_007795.1 RefSeq CDS 229611 231140 . - 0 ID=cds-YP_498805.1;Parent=gene-SAOUHSC_00209;Dbxref=Genbank:YP_498805.1,GeneID:3920364;Name=YP_498805.1;Note=PTS system%2C glucose-specific IIBC component%2C putative;gbkey=CDS;product=PTS system glucose-specific transporter subunit IIBC;protein_id=YP_498805.1;transl_table=11 +NC_007795.1 RefSeq gene 231502 232437 . + . ID=gene-SAOUHSC_00211;Dbxref=GeneID:3920365;Name=SAOUHSC_00211;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00211 +NC_007795.1 RefSeq CDS 231502 232437 . + 0 ID=cds-YP_498806.1;Parent=gene-SAOUHSC_00211;Dbxref=Genbank:YP_498806.1,GeneID:3920365;Name=YP_498806.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498806.1;transl_table=11 +NC_007795.1 RefSeq gene 232547 232645 . + . ID=gene-SAOUHSC_00212;Dbxref=GeneID:3920366;Name=SAOUHSC_00212;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00212 +NC_007795.1 RefSeq CDS 232547 232645 . + 0 ID=cds-YP_498807.1;Parent=gene-SAOUHSC_00212;Dbxref=Genbank:YP_498807.1,GeneID:3920366;Name=YP_498807.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498807.1;transl_table=11 +NC_007795.1 RefSeq gene 232776 234872 . + . ID=gene-SAOUHSC_00213;Dbxref=GeneID:3920289;Name=SAOUHSC_00213;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00213 +NC_007795.1 RefSeq CDS 232776 234872 . + 0 ID=cds-YP_498808.1;Parent=gene-SAOUHSC_00213;Dbxref=Genbank:YP_498808.1,GeneID:3920289;Name=YP_498808.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498808.1;transl_table=11 +NC_007795.1 RefSeq gene 234857 235324 . + . ID=gene-SAOUHSC_00214;Dbxref=GeneID:3920290;Name=SAOUHSC_00214;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00214 +NC_007795.1 RefSeq CDS 234857 235324 . + 0 ID=cds-YP_498809.1;Parent=gene-SAOUHSC_00214;Dbxref=Genbank:YP_498809.1,GeneID:3920290;Name=YP_498809.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C putative;gbkey=CDS;product=PTS system transporter subunit IIA;protein_id=YP_498809.1;transl_table=11 +NC_007795.1 RefSeq gene 235347 235625 . + . ID=gene-SAOUHSC_00215;Dbxref=GeneID:3920291;Name=SAOUHSC_00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00215 +NC_007795.1 RefSeq CDS 235347 235625 . + 0 ID=cds-YP_498810.1;Parent=gene-SAOUHSC_00215;Dbxref=Genbank:YP_498810.1,GeneID:3920291;Name=YP_498810.1;Note=PTS system component%2C putative;gbkey=CDS;product=PTS system transporter;protein_id=YP_498810.1;transl_table=11 +NC_007795.1 RefSeq gene 235852 237111 . + . ID=gene-SAOUHSC_00216;Dbxref=GeneID:3920292;Name=SAOUHSC_00216;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00216 +NC_007795.1 RefSeq CDS 235852 237111 . + 0 ID=cds-YP_498811.1;Parent=gene-SAOUHSC_00216;Dbxref=Genbank:YP_498811.1,GeneID:3920292;Name=YP_498811.1;Note=PTS system component;gbkey=CDS;product=PTS system transporter;protein_id=YP_498811.1;transl_table=11 +NC_007795.1 RefSeq gene 237129 238184 . + . ID=gene-SAOUHSC_00217;Dbxref=GeneID:3920293;Name=SAOUHSC_00217;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00217 +NC_007795.1 RefSeq CDS 237129 238184 . + 0 ID=cds-YP_498812.1;Parent=gene-SAOUHSC_00217;Dbxref=Genbank:YP_498812.1,GeneID:3920293;Name=YP_498812.1;Note=sorbitol dehydrogenase%2C putative;gbkey=CDS;product=sorbitol dehydrogenase;protein_id=YP_498812.1;transl_table=11 +NC_007795.1 RefSeq gene 238186 238332 . + . ID=gene-SAOUHSC_00218;Dbxref=GeneID:3920294;Name=SAOUHSC_00218;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00218 +NC_007795.1 RefSeq CDS 238186 238332 . + 0 ID=cds-YP_498813.1;Parent=gene-SAOUHSC_00218;Dbxref=Genbank:YP_498813.1,GeneID:3920294;Name=YP_498813.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498813.1;transl_table=11 +NC_007795.1 RefSeq gene 238356 239399 . + . ID=gene-SAOUHSC_00219;Dbxref=GeneID:3920295;Name=SAOUHSC_00219;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00219 +NC_007795.1 RefSeq CDS 238356 239399 . + 0 ID=cds-YP_498814.1;Parent=gene-SAOUHSC_00219;Dbxref=Genbank:YP_498814.1,GeneID:3920295;Name=YP_498814.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498814.1;transl_table=11 +NC_007795.1 RefSeq gene 239969 240643 . + . ID=gene-SAOUHSC_00220;Dbxref=GeneID:3920296;Name=SAOUHSC_00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00220 +NC_007795.1 RefSeq CDS 239969 240643 . + 0 ID=cds-YP_498815.1;Parent=gene-SAOUHSC_00220;Dbxref=Genbank:YP_498815.1,GeneID:3920296;Name=YP_498815.1;Note=4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers;gbkey=CDS;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=YP_498815.1;transl_table=11 +NC_007795.1 RefSeq gene 240636 241661 . + . ID=gene-SAOUHSC_00221;Dbxref=GeneID:3920297;Name=SAOUHSC_00221;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00221 +NC_007795.1 RefSeq CDS 240636 241661 . + 0 ID=cds-YP_498816.1;Parent=gene-SAOUHSC_00221;Dbxref=Genbank:YP_498816.1,GeneID:3920297;Name=YP_498816.1;Note=alcohol dehydrogenase%2C zinc-containing;gbkey=CDS;product=alcohol dehydrogenase;protein_id=YP_498816.1;transl_table=11 +NC_007795.1 RefSeq gene 241836 243377 . + . ID=gene-SAOUHSC_00222;Dbxref=GeneID:3920298;Name=SAOUHSC_00222;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00222 +NC_007795.1 RefSeq CDS 241836 243377 . + 0 ID=cds-YP_498818.1;Parent=gene-SAOUHSC_00222;Dbxref=Genbank:YP_498818.1,GeneID:3920298;Name=YP_498818.1;Note=tagB protein%2C putative;gbkey=CDS;product=teichoic acid biosynthesis protein TagB;protein_id=YP_498818.1;transl_table=11 +NC_007795.1 RefSeq gene 243805 244974 . + . ID=gene-SAOUHSC_00223;Dbxref=GeneID:3920299;Name=SAOUHSC_00223;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00223 +NC_007795.1 RefSeq CDS 243805 244974 . + 0 ID=cds-YP_498819.1;Parent=gene-SAOUHSC_00223;Dbxref=Genbank:YP_498819.1,GeneID:3920299;Name=YP_498819.1;Note=teichoic acid biosynthesis protein F%2C putative;gbkey=CDS;product=teichoic acid biosynthesis protein F;protein_id=YP_498819.1;transl_table=11 +NC_007795.1 RefSeq gene 245250 245966 . + . ID=gene-SAOUHSC_00225;Dbxref=GeneID:3920300;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=SAOUHSC_00225 +NC_007795.1 RefSeq CDS 245250 245966 . + 0 ID=cds-YP_498820.1;Parent=gene-SAOUHSC_00225;Dbxref=Genbank:YP_498820.1,GeneID:3920300;Name=YP_498820.1;Note=4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers;gbkey=CDS;gene=ispD;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=YP_498820.1;transl_table=11 +NC_007795.1 RefSeq gene 245959 246984 . + . ID=gene-SAOUHSC_00226;Dbxref=GeneID:3920301;Name=SAOUHSC_00226;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00226 +NC_007795.1 RefSeq CDS 245959 246984 . + 0 ID=cds-YP_498821.1;Parent=gene-SAOUHSC_00226;Dbxref=Genbank:YP_498821.1,GeneID:3920301;Name=YP_498821.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498821.1;transl_table=11 +NC_007795.1 RefSeq gene 247006 248694 . + . ID=gene-SAOUHSC_00227;Dbxref=GeneID:3920302;Name=SAOUHSC_00227;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00227 +NC_007795.1 RefSeq CDS 247006 248694 . + 0 ID=cds-YP_498822.1;Parent=gene-SAOUHSC_00227;Dbxref=Genbank:YP_498822.1,GeneID:3920302;Name=YP_498822.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498822.1;transl_table=11 +NC_007795.1 RefSeq gene 248727 250451 . + . ID=gene-SAOUHSC_00228;Dbxref=GeneID:3920303;Name=SAOUHSC_00228;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00228 +NC_007795.1 RefSeq CDS 248727 250451 . + 0 ID=cds-YP_498823.1;Parent=gene-SAOUHSC_00228;Dbxref=Genbank:YP_498823.1,GeneID:3920303;Name=YP_498823.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498823.1;transl_table=11 +NC_007795.1 RefSeq gene 250591 251265 . + . ID=gene-SAOUHSC_00229;Dbxref=GeneID:3920304;Name=SAOUHSC_00229;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00229 +NC_007795.1 RefSeq CDS 250591 251265 . + 0 ID=cds-YP_498824.1;Parent=gene-SAOUHSC_00229;Dbxref=Genbank:YP_498824.1,GeneID:3920304;Name=YP_498824.1;Note=involved in peptidoglycan cross-linking;gbkey=CDS;product=cell wall biosynthesis protein ScdA;protein_id=YP_498824.1;transl_table=11 +NC_007795.1 RefSeq gene 251527 253266 . + . ID=gene-SAOUHSC_00230;Dbxref=GeneID:3920305;Name=SAOUHSC_00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00230 +NC_007795.1 RefSeq CDS 251527 253266 . + 0 ID=cds-YP_498825.1;Parent=gene-SAOUHSC_00230;Dbxref=Genbank:YP_498825.1,GeneID:3920305;Name=YP_498825.1;Note=two-component sensor histidine kinase%2C putative;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=YP_498825.1;transl_table=11 +NC_007795.1 RefSeq gene 253269 254009 . + . ID=gene-SAOUHSC_00231;Dbxref=GeneID:3920306;Name=SAOUHSC_00231;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00231 +NC_007795.1 RefSeq CDS 253269 254009 . + 0 ID=cds-YP_498826.1;Parent=gene-SAOUHSC_00231;Dbxref=Genbank:YP_498826.1,GeneID:3920306;Name=YP_498826.1;Note=two-component response regulator%2C putative;gbkey=CDS;product=two-component response regulator;protein_id=YP_498826.1;transl_table=11 +NC_007795.1 RefSeq gene 254122 254565 . + . ID=gene-SAOUHSC_00232;Dbxref=GeneID:3920307;Name=SAOUHSC_00232;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00232 +NC_007795.1 RefSeq CDS 254122 254565 . + 0 ID=cds-YP_498827.1;Parent=gene-SAOUHSC_00232;Dbxref=Genbank:YP_498827.1,GeneID:3920307;Name=YP_498827.1;Note=negatively regulates murein hydrolase activity;gbkey=CDS;product=murein hydrolase regulator LrgA;protein_id=YP_498827.1;transl_table=11 +NC_007795.1 RefSeq gene 254558 255259 . + . ID=gene-SAOUHSC_00233;Dbxref=GeneID:3920308;Name=SAOUHSC_00233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00233 +NC_007795.1 RefSeq CDS 254558 255259 . + 0 ID=cds-YP_498828.1;Parent=gene-SAOUHSC_00233;Dbxref=Genbank:YP_498828.1,GeneID:3920308;Name=YP_498828.1;Note=in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases;gbkey=CDS;product=antiholin-like protein LrgB;protein_id=YP_498828.1;transl_table=11 +NC_007795.1 RefSeq gene 255367 256071 . - . ID=gene-SAOUHSC_00234;Dbxref=GeneID:3919254;Name=SAOUHSC_00234;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00234 +NC_007795.1 RefSeq CDS 255367 256071 . - 0 ID=cds-YP_498829.1;Parent=gene-SAOUHSC_00234;Dbxref=Genbank:YP_498829.1,GeneID:3919254;Name=YP_498829.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498829.1;transl_table=11 +NC_007795.1 RefSeq gene 256220 257011 . + . ID=gene-SAOUHSC_00235;Dbxref=GeneID:3919255;Name=SAOUHSC_00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00235 +NC_007795.1 RefSeq CDS 256220 257011 . + 0 ID=cds-YP_498830.1;Parent=gene-SAOUHSC_00235;Dbxref=Genbank:YP_498830.1,GeneID:3919255;Name=YP_498830.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498830.1;transl_table=11 +NC_007795.1 RefSeq gene 257027 258463 . + . ID=gene-SAOUHSC_00236;Dbxref=GeneID:3919256;Name=SAOUHSC_00236;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00236 +NC_007795.1 RefSeq CDS 257027 258463 . + 0 ID=cds-YP_498831.1;Parent=gene-SAOUHSC_00236;Dbxref=Genbank:YP_498831.1,GeneID:3919256;Name=YP_498831.1;Note=6-phospho-beta-glucosidase%2C putative;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=YP_498831.1;transl_table=11 +NC_007795.1 RefSeq gene 258896 259657 . - . ID=gene-SAOUHSC_00237;Dbxref=GeneID:3919257;Name=SAOUHSC_00237;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00237 +NC_007795.1 RefSeq CDS 258896 259657 . - 0 ID=cds-YP_498832.1;Parent=gene-SAOUHSC_00237;Dbxref=Genbank:YP_498832.1,GeneID:3919257;Name=YP_498832.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498832.1;transl_table=11 +NC_007795.1 RefSeq gene 259676 259810 . + . ID=gene-SAOUHSC_00238;Dbxref=GeneID:3919258;Name=SAOUHSC_00238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00238 +NC_007795.1 RefSeq CDS 259676 259810 . + 0 ID=cds-YP_498833.1;Parent=gene-SAOUHSC_00238;Dbxref=Genbank:YP_498833.1,GeneID:3919258;Name=YP_498833.1;gbkey=CDS;product=hypothetical protein;protein_id=YP_498833.1;transl_table=11 +NC_007795.1 RefSeq gene 259908 260822 . - . ID=gene-SAOUHSC_00239;Dbxref=GeneID:3919259;Name=SAOUHSC_00239;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00239 +NC_007795.1 RefSeq CDS 259908 260822 . - 0 ID=cds-YP_498834.1;Parent=gene-SAOUHSC_00239;Dbxref=Genbank:YP_498834.1,GeneID:3919259;Name=YP_498834.1;Note=ribokinase%2C putative;gbkey=CDS;product=ribokinase;protein_id=YP_498834.1;transl_table=11 +NC_007795.1 RefSeq gene 260850 261254 . - . ID=gene-SAOUHSC_00240;Dbxref=GeneID:3919260;Name=SAOUHSC_00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00240 +NC_007795.1 RefSeq CDS 260850 261254 . - 0 ID=cds-YP_498835.1;Parent=gene-SAOUHSC_00240;Dbxref=Genbank:YP_498835.1,GeneID:3919260;Name=YP_498835.1;Note=cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source;gbkey=CDS;product=D-ribose pyranase;protein_id=YP_498835.1;transl_table=11 +NC_007795.1 RefSeq gene 261269 262150 . - . ID=gene-SAOUHSC_00241;Dbxref=GeneID:3919261;Name=SAOUHSC_00241;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00241 +NC_007795.1 RefSeq CDS 261269 262150 . - 0 ID=cds-YP_498836.1;Parent=gene-SAOUHSC_00241;Dbxref=Genbank:YP_498836.1,GeneID:3919261;Name=YP_498836.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498836.1;transl_table=11 +NC_007795.1 RefSeq gene 262382 263380 . - . ID=gene-SAOUHSC_00242;Dbxref=GeneID:3919262;Name=SAOUHSC_00242;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00242 +NC_007795.1 RefSeq CDS 262382 263380 . - 0 ID=cds-YP_498837.1;Parent=gene-SAOUHSC_00242;Dbxref=Genbank:YP_498837.1,GeneID:3919262;Name=YP_498837.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498837.1;transl_table=11 +NC_007795.1 RefSeq gene 263531 263710 . + . ID=gene-SAOUHSC_00243;Dbxref=GeneID:3919263;Name=SAOUHSC_00243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00243 +NC_007795.1 RefSeq CDS 263531 263710 . + 0 ID=cds-YP_498838.1;Parent=gene-SAOUHSC_00243;Dbxref=Genbank:YP_498838.1,GeneID:3919263;Name=YP_498838.1;Note=NADH dehydrogenase subunit%2C putative;gbkey=CDS;product=NADH dehydrogenase subunit;protein_id=YP_498838.1;transl_table=11 +NC_007795.1 RefSeq gene 263760 264152 . + . ID=gene-SAOUHSC_00244;Dbxref=GeneID:3919264;Name=SAOUHSC_00244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00244 +NC_007795.1 RefSeq CDS 263760 264152 . + 0 ID=cds-YP_498839.1;Parent=gene-SAOUHSC_00244;Dbxref=Genbank:YP_498839.1,GeneID:3919264;Name=YP_498839.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498839.1;transl_table=11 +NC_007795.1 RefSeq gene 264825 266201 . - . ID=gene-SAOUHSC_00246;Dbxref=GeneID:3919266;Name=SAOUHSC_00246;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00246 +NC_007795.1 RefSeq CDS 264825 266201 . - 0 ID=cds-YP_498841.1;Parent=gene-SAOUHSC_00246;Dbxref=Genbank:YP_498841.1,GeneID:3919266;Name=YP_498841.1;Note=drug transporter%2C putative;gbkey=CDS;product=drug transporter;protein_id=YP_498841.1;transl_table=11 +NC_007795.1 RefSeq gene 266435 267427 . + . ID=gene-SAOUHSC_00247;Dbxref=GeneID:3919267;Name=SAOUHSC_00247;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00247 +NC_007795.1 RefSeq CDS 266435 267427 . + 0 ID=cds-YP_498842.1;Parent=gene-SAOUHSC_00247;Dbxref=Genbank:YP_498842.1,GeneID:3919267;Name=YP_498842.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498842.1;transl_table=11 +NC_007795.1 RefSeq gene 267753 268703 . + . ID=gene-SAOUHSC_00248;Dbxref=GeneID:3919268;Name=SAOUHSC_00248;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00248 +NC_007795.1 RefSeq CDS 267753 268703 . + 0 ID=cds-YP_498843.1;Parent=gene-SAOUHSC_00248;Dbxref=Genbank:YP_498843.1,GeneID:3919268;Name=YP_498843.1;Note=peptidoglycan hydrolase%2C putative;gbkey=CDS;product=peptidoglycan hydrolase;protein_id=YP_498843.1;transl_table=11 +NC_007795.1 RefSeq gene 268755 269414 . - . ID=gene-SAOUHSC_00249;Dbxref=GeneID:3919269;Name=SAOUHSC_00249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00249 +NC_007795.1 RefSeq CDS 268755 269414 . - 0 ID=cds-YP_498844.1;Parent=gene-SAOUHSC_00249;Dbxref=Genbank:YP_498844.1,GeneID:3919269;Name=YP_498844.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498844.1;transl_table=11 +NC_007795.1 RefSeq gene 269428 270348 . - . ID=gene-SAOUHSC_00250;Dbxref=GeneID:3919270;Name=SAOUHSC_00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00250 +NC_007795.1 RefSeq CDS 269428 270348 . - 0 ID=cds-YP_498845.1;Parent=gene-SAOUHSC_00250;Dbxref=Genbank:YP_498845.1,GeneID:3919270;Name=YP_498845.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498845.1;transl_table=11 +NC_007795.1 RefSeq gene 270345 271511 . - . ID=gene-SAOUHSC_00251;Dbxref=GeneID:3919271;Name=SAOUHSC_00251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00251 +NC_007795.1 RefSeq CDS 270345 271511 . - 0 ID=cds-YP_498846.1;Parent=gene-SAOUHSC_00251;Dbxref=Genbank:YP_498846.1,GeneID:3919271;Name=YP_498846.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498846.1;transl_table=11 +NC_007795.1 RefSeq gene 271579 273102 . - . ID=gene-SAOUHSC_00253;Dbxref=GeneID:3919272;Name=SAOUHSC_00253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00253 +NC_007795.1 RefSeq CDS 271579 273102 . - 0 ID=cds-YP_498847.1;Parent=gene-SAOUHSC_00253;Dbxref=Genbank:YP_498847.1,GeneID:3919272;Name=YP_498847.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498847.1;transl_table=11 +NC_007795.1 RefSeq gene 273373 274026 . + . ID=gene-SAOUHSC_00254;Dbxref=GeneID:3919196;Name=SAOUHSC_00254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00254 +NC_007795.1 RefSeq CDS 273373 274026 . + 0 ID=cds-YP_498848.1;Parent=gene-SAOUHSC_00254;Dbxref=Genbank:YP_498848.1,GeneID:3919196;Name=YP_498848.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498848.1;transl_table=11 +NC_007795.1 RefSeq gene 274060 274647 . + . ID=gene-SAOUHSC_00255;Dbxref=GeneID:3919197;Name=SAOUHSC_00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00255 +NC_007795.1 RefSeq CDS 274060 274647 . + 0 ID=cds-YP_498849.1;Parent=gene-SAOUHSC_00255;Dbxref=Genbank:YP_498849.1,GeneID:3919197;Name=YP_498849.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498849.1;transl_table=11 +NC_007795.1 RefSeq gene 274790 275683 . - . ID=gene-SAOUHSC_00256;Dbxref=GeneID:3919198;Name=SAOUHSC_00256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00256 +NC_007795.1 RefSeq CDS 274790 275683 . - 0 ID=cds-YP_498850.1;Parent=gene-SAOUHSC_00256;Dbxref=Genbank:YP_498850.1,GeneID:3919198;Name=YP_498850.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498850.1;transl_table=11 +NC_007795.1 RefSeq gene 275931 276224 . + . ID=gene-SAOUHSC_00257;Dbxref=GeneID:3919199;Name=SAOUHSC_00257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00257 +NC_007795.1 RefSeq CDS 275931 276224 . + 0 ID=cds-YP_498851.1;Parent=gene-SAOUHSC_00257;Dbxref=Genbank:YP_498851.1,GeneID:3919199;Name=YP_498851.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498851.1;transl_table=11 +NC_007795.1 RefSeq gene 276308 279337 . + . ID=gene-SAOUHSC_00258;Dbxref=GeneID:3919200;Name=SAOUHSC_00258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00258 +NC_007795.1 RefSeq CDS 276308 279337 . + 0 ID=cds-YP_498852.1;Parent=gene-SAOUHSC_00258;Dbxref=Genbank:YP_498852.1,GeneID:3919200;Name=YP_498852.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498852.1;transl_table=11 +NC_007795.1 RefSeq gene 279337 279795 . + . ID=gene-SAOUHSC_00259;Dbxref=GeneID:3919201;Name=SAOUHSC_00259;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00259 +NC_007795.1 RefSeq CDS 279337 279795 . + 0 ID=cds-YP_498853.1;Parent=gene-SAOUHSC_00259;Dbxref=Genbank:YP_498853.1,GeneID:3919201;Name=YP_498853.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498853.1;transl_table=11 +NC_007795.1 RefSeq gene 279728 280009 . + . ID=gene-SAOUHSC_00260;Dbxref=GeneID:3919202;Name=SAOUHSC_00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00260 +NC_007795.1 RefSeq CDS 279728 280009 . + 0 ID=cds-YP_498854.1;Parent=gene-SAOUHSC_00260;Dbxref=Genbank:YP_498854.1,GeneID:3919202;Name=YP_498854.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498854.1;transl_table=11 +NC_007795.1 RefSeq gene 280022 281356 . + . ID=gene-SAOUHSC_00261;Dbxref=GeneID:3919203;Name=SAOUHSC_00261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00261 +NC_007795.1 RefSeq CDS 280022 281356 . + 0 ID=cds-YP_498855.1;Parent=gene-SAOUHSC_00261;Dbxref=Genbank:YP_498855.1,GeneID:3919203;Name=YP_498855.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498855.1;transl_table=11 +NC_007795.1 RefSeq gene 281378 285817 . + . ID=gene-SAOUHSC_00262;Dbxref=GeneID:3919204;Name=SAOUHSC_00262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00262 +NC_007795.1 RefSeq CDS 281378 285817 . + 0 ID=cds-YP_498856.1;Parent=gene-SAOUHSC_00262;Dbxref=Genbank:YP_498856.1,GeneID:3919204;Name=YP_498856.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498856.1;transl_table=11 +NC_007795.1 RefSeq gene 285847 286239 . + . ID=gene-SAOUHSC_00264;Dbxref=GeneID:3919205;Name=SAOUHSC_00264;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00264 +NC_007795.1 RefSeq CDS 285847 286239 . + 0 ID=cds-YP_498857.1;Parent=gene-SAOUHSC_00264;Dbxref=Genbank:YP_498857.1,GeneID:3919205;Name=YP_498857.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498857.1;transl_table=11 +NC_007795.1 RefSeq gene 286255 286569 . + . ID=gene-SAOUHSC_00265;Dbxref=GeneID:3919206;Name=SAOUHSC_00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00265 +NC_007795.1 RefSeq CDS 286255 286569 . + 0 ID=cds-YP_498858.1;Parent=gene-SAOUHSC_00265;Dbxref=Genbank:YP_498858.1,GeneID:3919206;Name=YP_498858.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498858.1;transl_table=11 +NC_007795.1 RefSeq gene 286569 287243 . + . ID=gene-SAOUHSC_00266;Dbxref=GeneID:3919207;Name=SAOUHSC_00266;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00266 +NC_007795.1 RefSeq CDS 286569 287243 . + 0 ID=cds-YP_498859.1;Parent=gene-SAOUHSC_00266;Dbxref=Genbank:YP_498859.1,GeneID:3919207;Name=YP_498859.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498859.1;transl_table=11 +NC_007795.1 RefSeq gene 287243 287560 . + . ID=gene-SAOUHSC_00267;Dbxref=GeneID:3919208;Name=SAOUHSC_00267;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00267 +NC_007795.1 RefSeq CDS 287243 287560 . + 0 ID=cds-YP_498860.1;Parent=gene-SAOUHSC_00267;Dbxref=Genbank:YP_498860.1,GeneID:3919208;Name=YP_498860.1;Note=conserved hypothetical protein;gbkey=CDS;product=hypothetical protein;protein_id=YP_498860.1;transl_table=11 +NC_007795.1 RefSeq gene 287570 289414 . + . ID=gene-SAOUHSC_00268;Dbxref=GeneID:3919209;Name=SAOUHSC_00268;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SAOUHSC_00268
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gff_to_prot-out1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,247 @@ +binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. 517 1878 + 453 - - dnaA SAOUHSC_00001 - +binds the polymerase to DNA and acts as a sliding clamp 2156 3289 + 377 - - SAOUHSC_00002 SAOUHSC_00002 - +conserved hypothetical protein 3670 3915 + 81 - - SAOUHSC_00003 SAOUHSC_00003 - +Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA 3912 5024 + 370 - - recF SAOUHSC_00004 - +DNA gyrase%2C B subunit 5034 6968 + 644 - - SAOUHSC_00005 SAOUHSC_00005 - +DNA gyrase%2C A subunit 7005 9668 + 887 - - SAOUHSC_00006 SAOUHSC_00006 - +conserved hypothetical protein 9755 10456 - 233 - - SAOUHSC_00007 SAOUHSC_00007 - +catalyzes the degradation of histidine to urocanate and ammmonia 10893 12407 + 504 - - SAOUHSC_00008 SAOUHSC_00008 - +catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA 12786 14072 + 428 - - SAOUHSC_00009 SAOUHSC_00009 - +conserved hypothetical protein 14722 15417 + 231 - - SAOUHSC_00010 SAOUHSC_00010 - +conserved hypothetical protein 15414 15743 + 109 - - SAOUHSC_00012 SAOUHSC_00012 - +conserved hypothetical protein 16106 17074 + 322 - - SAOUHSC_00013 SAOUHSC_00013 - +conserved hypothetical protein 17365 18303 + 312 - - SAOUHSC_00014 SAOUHSC_00014 - +conserved hypothetical protein 18318 20285 + 655 - - SAOUHSC_00015 SAOUHSC_00015 - +in Escherichia coli this protein is wrapped around the base of the L1 stalk 20282 20734 + 150 - - rplI SAOUHSC_00017 - +replicative DNA helicase 20766 22166 + 466 - - SAOUHSC_00018 SAOUHSC_00018 - +catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis 22444 23727 + 427 - - SAOUHSC_00019 SAOUHSC_00019 - +- 24157 24231 + 24 - - SAOUHSC_T00018 SAOUHSC_T00018 - +- 24239 24311 + 24 - - SAOUHSC_T00011 SAOUHSC_T00011 - +two-component response regulator%2C putative 24931 25632 + 233 - - SAOUHSC_00020 SAOUHSC_00020 - +sensory box histidine kinase VicK%2C putative 25645 27471 + 608 - - SAOUHSC_00021 SAOUHSC_00021 - +conserved hypothetical protein 27515 28798 + 427 - - SAOUHSC_00022 SAOUHSC_00022 - +conserved hypothetical protein 28799 29587 + 262 - - SAOUHSC_00023 SAOUHSC_00023 - +conserved hypothetical protein 29977 30777 + 266 - - SAOUHSC_00024 SAOUHSC_00024 - +conserved hypothetical protein 31005 33323 + 772 - - SAOUHSC_00025 SAOUHSC_00025 - +conserved hypothetical protein 33555 34034 - 159 - - SAOUHSC_00026 SAOUHSC_00026 - +SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA 33691 34170 + 159 - - SAOUHSC_00027 SAOUHSC_00027 - +- 34375 34509 - 44 - - SAOUHSC_00028 SAOUHSC_00028 - +conserved hypothetical protein 34473 34565 + 30 - - SAOUHSC_00029 SAOUHSC_00029 - +conserved hypothetical protein 34712 36457 + 581 - - SAOUHSC_00030 SAOUHSC_00030 - +conserved hypothetical protein 36551 37003 - 150 - - SAOUHSC_00031 SAOUHSC_00031 - +conserved hypothetical protein 37019 37120 - 33 - - SAOUHSC_00032 SAOUHSC_00032 - +conserved hypothetical protein 37218 37973 - 251 - - SAOUHSC_00033 SAOUHSC_00033 - +conserved hypothetical protein 37973 38233 - 86 - - SAOUHSC_00034 SAOUHSC_00034 - +conserved hypothetical protein 38370 39437 + 355 - - SAOUHSC_00035 SAOUHSC_00035 - +conserved hypothetical protein 39468 40802 + 444 - - SAOUHSC_00036 SAOUHSC_00036 - +conserved hypothetical protein 40821 42014 + 397 - - SAOUHSC_00037 SAOUHSC_00037 - +conserved hypothetical protein 42281 42382 - 33 - - SAOUHSC_00038 SAOUHSC_00038 - +conserved hypothetical protein 42681 43613 - 310 - - SAOUHSC_00039 SAOUHSC_00039 - +conserved hypothetical protein 43976 44179 + 67 - - SAOUHSC_00040 SAOUHSC_00040 - +conserved hypothetical protein 44228 44524 + 98 - - SAOUHSC_00041 SAOUHSC_00041 - +conserved hypothetical protein 44596 45816 - 406 - - SAOUHSC_00042 SAOUHSC_00042 - +conserved hypothetical protein 45809 46360 - 183 - - SAOUHSC_00043 SAOUHSC_00043 - +conserved hypothetical protein 46473 47333 + 286 - - SAOUHSC_00044 SAOUHSC_00044 - +conserved hypothetical protein 47689 48222 - 177 - - SAOUHSC_00045 SAOUHSC_00045 - +conserved hypothetical protein 48313 49056 + 247 - - SAOUHSC_00046 SAOUHSC_00046 - +conserved hypothetical protein 49490 50092 + 200 - - SAOUHSC_00047 SAOUHSC_00047 - +conserved hypothetical protein 50359 53511 + 1050 - - SAOUHSC_00049 SAOUHSC_00049 - +conserved hypothetical protein 53568 54050 + 160 - - SAOUHSC_00050 SAOUHSC_00050 - +1-phosphatidylinositol phosphodiesterase precursor%2C putative 54255 55241 + 328 - - SAOUHSC_00051 SAOUHSC_00051 - +conserved hypothetical protein 55462 56232 + 256 - - SAOUHSC_00052 SAOUHSC_00052 - +conserved hypothetical protein 56284 57054 + 256 - - SAOUHSC_00053 SAOUHSC_00053 - +conserved hypothetical protein 57118 57888 + 256 - - SAOUHSC_00054 SAOUHSC_00054 - +conserved hypothetical protein 57955 58722 + 255 - - SAOUHSC_00055 SAOUHSC_00055 - +conserved hypothetical protein 58855 61053 + 732 - - SAOUHSC_00056 SAOUHSC_00056 - +conserved hypothetical protein 61204 62382 + 392 - - SAOUHSC_00057 SAOUHSC_00057 - +conserved hypothetical protein 62384 63772 + 462 - - SAOUHSC_00058 SAOUHSC_00058 - +conserved hypothetical protein 64265 65926 - 553 - - SAOUHSC_00060 SAOUHSC_00060 - +in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever 66252 68027 - 591 - - SAOUHSC_00061 SAOUHSC_00061 - +conserved hypothetical protein 68201 69073 - 290 - - SAOUHSC_00062 SAOUHSC_00062 - +conserved hypothetical protein 69186 70583 + 465 - - SAOUHSC_00064 SAOUHSC_00064 - +conserved hypothetical protein 70773 71246 + 157 - - SAOUHSC_00065 SAOUHSC_00065 - +L-lactate permease 71508 73100 + 530 - - SAOUHSC_00067 SAOUHSC_00067 - +protein A 73429 74979 - 516 - - SAOUHSC_00069 SAOUHSC_00069 - +staphylococcal accessory regulator-like protein 75400 76152 - 250 - - SAOUHSC_00070 SAOUHSC_00070 - +lipoprotein%2C SirC%2C putative 76521 77435 - 304 - - SAOUHSC_00071 SAOUHSC_00071 - +lipoprotein%2C SirB%2C putative 77516 78511 - 331 - - SAOUHSC_00072 SAOUHSC_00072 - +periplasmic binding protein%2C putative 78527 79519 - 330 - - SAOUHSC_00074 SAOUHSC_00074 - +conserved hypothetical protein 79885 80730 + 281 - - SAOUHSC_00075 SAOUHSC_00075 - +ornithine cyclodeaminase%2C putative 80727 81737 + 336 - - SAOUHSC_00076 SAOUHSC_00076 - +conserved hypothetical protein 81758 83512 + 584 - - SAOUHSC_00077 SAOUHSC_00077 - +conserved hypothetical protein 83505 84761 + 418 - - SAOUHSC_00078 SAOUHSC_00078 - +conserved hypothetical protein 84751 86487 + 578 - - SAOUHSC_00079 SAOUHSC_00079 - +conserved hypothetical protein 86396 88246 + 616 - - SAOUHSC_00080 SAOUHSC_00080 - +conserved hypothetical protein 88221 88997 + 258 - - SAOUHSC_00081 SAOUHSC_00081 - +conserved hypothetical protein 88997 90199 + 400 - - SAOUHSC_00082 SAOUHSC_00082 - +conserved hypothetical protein 90203 90967 + 254 - - SAOUHSC_00083 SAOUHSC_00083 - +conserved hypothetical protein 91163 91570 + 135 - - SAOUHSC_00084 SAOUHSC_00084 - +conserved hypothetical protein 91620 92246 + 208 - - SAOUHSC_00085 SAOUHSC_00085 - +3-ketoacyl-acyl carrier protein reductase%2C putative 92458 93234 + 258 - - SAOUHSC_00086 SAOUHSC_00086 - +conserved hypothetical protein 93378 93500 + 40 - - SAOUHSC_00087 SAOUHSC_00087 - +conserved hypothetical protein 93570 94550 + 326 - - SAOUHSC_00088 SAOUHSC_00088 - +conserved hypothetical protein 94513 95205 + 230 - - SAOUHSC_00089 SAOUHSC_00089 - +conserved hypothetical protein 95415 96581 + 388 - - SAOUHSC_00090 SAOUHSC_00090 - +conserved hypothetical protein 96562 97800 + 412 - - SAOUHSC_00091 SAOUHSC_00091 - +conserved hypothetical protein 97790 99220 + 476 - - SAOUHSC_00092 SAOUHSC_00092 - +superoxide dismutase%2C putative 99488 100087 + 199 - - SAOUHSC_00093 SAOUHSC_00093 - +conserved hypothetical protein 100455 101054 + 199 - - SAOUHSC_00094 SAOUHSC_00094 - +transcriptional regulator%2C GntR family%2C putative 101370 102125 - 251 - - SAOUHSC_00096 SAOUHSC_00096 - +catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate 102361 103068 + 235 - - SAOUHSC_00097 SAOUHSC_00097 - +conserved hypothetical protein 103075 104427 + 450 - - SAOUHSC_00099 SAOUHSC_00099 - +catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate 104508 105170 + 220 - - SAOUHSC_00100 SAOUHSC_00100 - +catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose 105198 106376 + 392 - - SAOUHSC_00101 SAOUHSC_00101 - +phosphonates ABC transporter%2C permease protein CC0363%2C putative 106507 107322 - 271 - - SAOUHSC_00102 SAOUHSC_00102 - +phosphonates ABC transporter%2C permease protein CC0363%2C putative 107319 108119 - 266 - - SAOUHSC_00103 SAOUHSC_00103 - +amino acid ABC transporter%2C ATP-binding protein%2C putative 108121 108894 - 257 - - SAOUHSC_00104 SAOUHSC_00104 - +phosphonate ABC transporter%2C substrate-binding protein%2C putative 109108 110064 - 318 - - SAOUHSC_00105 SAOUHSC_00105 - +conserved hypothetical protein 110293 111837 + 514 - - SAOUHSC_00106 SAOUHSC_00106 - +conserved hypothetical protein 111888 113423 + 511 - - SAOUHSC_00107 SAOUHSC_00107 - +conserved hypothetical protein 113507 113710 + 67 - - SAOUHSC_00108 SAOUHSC_00108 - +replication initiation protein%2C putative 114083 114568 + 161 - - SAOUHSC_00109 SAOUHSC_00109 - +- 114927 115214 + 95 - - SAOUHSC_00111 SAOUHSC_00111 - +alcohol dehydrogenase%2C iron-containing%2C putative 116538 119147 + 869 - - SAOUHSC_00113 SAOUHSC_00113 - +capsular polysaccharide biosynthesis protein%2C putative 119492 120160 + 222 - - SAOUHSC_00114 SAOUHSC_00114 - +capsular polysaccharide synthesis enzyme Cap5B 120176 120862 + 228 - - SAOUHSC_00115 SAOUHSC_00115 - +capsular polysaccharide synthesis enzyme Cap8C 120865 121629 + 254 - - SAOUHSC_00116 SAOUHSC_00116 - +capsular polysaccharide biosynthesis protein Cap5D%2C putative 121649 123472 + 607 - - SAOUHSC_00117 SAOUHSC_00117 - +capsular polysaccharide biosynthesis protein Cap5E%2C putative 123462 124490 + 342 - - SAOUHSC_00118 SAOUHSC_00118 - +capsular polysaccharide synthesis enzyme Cap8F 124503 125612 + 369 - - SAOUHSC_00119 SAOUHSC_00119 - +UDP-N-acetylglucosamine 2-epimerase 125616 126740 + 374 - - SAOUHSC_00120 SAOUHSC_00120 - +capsular polysaccharide synthesis enzyme O-acetyl transferase Cap5H%2C putative 126743 127369 + 208 - - SAOUHSC_00121 SAOUHSC_00121 - +capsular polysaccharide biosynthesis protein Cap5I%2C putative 127374 128483 + 369 - - SAOUHSC_00122 SAOUHSC_00122 - +capsular polysaccharide biosynthesis protein Cap5J%2C putative 128497 129663 + 388 - - SAOUHSC_00123 SAOUHSC_00123 - +capsular polysaccharide biosynthesis protein Cap5K%2C putative 129656 130861 + 401 - - SAOUHSC_00124 SAOUHSC_00124 - +cap5L protein/glycosyltransferase%2C putative 130862 132067 + 401 - - SAOUHSC_00125 SAOUHSC_00125 - +capsular polysaccharide biosynthesis protein Cap8M 132078 132635 + 185 - - SAOUHSC_00126 SAOUHSC_00126 - +cap5N protein/UDP-glucose 4-epimerase%2C putative 132635 133522 + 295 - - SAOUHSC_00127 SAOUHSC_00127 - +cap5O protein/UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 133576 134838 + 420 - - SAOUHSC_00128 SAOUHSC_00128 - +UDP-N-acetylglucosamine 2-epimerase 134915 136060 + 381 - - SAOUHSC_00129 SAOUHSC_00129 - +iron regulated%3B catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source 136125 136451 - 108 - - SAOUHSC_00130 SAOUHSC_00130 - +conserved hypothetical protein 136458 136841 - 127 - - SAOUHSC_00131 SAOUHSC_00131 - +aldehyde dehydrogenase%2C putative 137268 138755 + 495 - - SAOUHSC_00132 SAOUHSC_00132 - +conserved hypothetical protein 139401 140360 + 319 - - SAOUHSC_00133 SAOUHSC_00133 - +conserved hypothetical protein 140422 140625 - 67 - - SAOUHSC_00134 SAOUHSC_00134 - +conserved hypothetical protein 140804 141316 + 170 - - SAOUHSC_00135 SAOUHSC_00135 - +conserved hypothetical protein 141658 142398 + 246 - - SAOUHSC_00136 SAOUHSC_00136 - +conserved hypothetical protein 142412 143386 + 324 - - SAOUHSC_00137 SAOUHSC_00137 - +conserved hypothetical protein 143383 144144 + 253 - - SAOUHSC_00138 SAOUHSC_00138 - +conserved hypothetical protein 144157 145188 + 343 - - SAOUHSC_00139 SAOUHSC_00139 - +conserved hypothetical protein 145405 145764 + 119 - - SAOUHSC_00141 SAOUHSC_00141 - +Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen%2C nitrate%2C sulphate or fumarate 145937 146962 + 341 - - SAOUHSC_00142 SAOUHSC_00142 - +conserved hypothetical protein 147348 148598 + 416 - - SAOUHSC_00143 SAOUHSC_00143 - +conserved hypothetical protein 149045 156220 + 2391 - - SAOUHSC_00144 SAOUHSC_00144 - +conserved hypothetical protein 156233 156877 + 214 - - SAOUHSC_00145 SAOUHSC_00145 - +conserved hypothetical protein 157205 157684 - 159 - - SAOUHSC_00146 SAOUHSC_00146 - +acetylglutamate kinase%2C putative 157954 158718 - 254 - - SAOUHSC_00147 SAOUHSC_00147 - +bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate 158734 159975 - 413 - - argJ SAOUHSC_00148 - +catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate 159987 161018 - 343 - - argC SAOUHSC_00149 - +ornithine aminotransferase%2C putative 161057 162241 - 394 - - SAOUHSC_00150 SAOUHSC_00150 - +branched-chain amino acid transport system II carrier protein 162494 163849 - 451 - - SAOUHSC_00151 SAOUHSC_00151 - +conserved hypothetical protein 164125 164622 - 165 - - SAOUHSC_00152 SAOUHSC_00152 - +indolepyruvate decarboxylase%2C putative 164749 166389 - 546 - - SAOUHSC_00153 SAOUHSC_00153 - +conserved hypothetical protein 166583 166684 + 33 - - SAOUHSC_00154 SAOUHSC_00154 - +PTS system%2C glucose-specific component 166663 168660 - 665 - - SAOUHSC_00155 SAOUHSC_00155 - +conserved hypothetical protein 169309 170349 + 346 - - SAOUHSC_00156 SAOUHSC_00156 - +catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway 170349 171245 + 298 - - murQ SAOUHSC_00157 - +PTS system component 171257 172711 + 484 - - SAOUHSC_00158 SAOUHSC_00158 - +conserved hypothetical protein 172714 173589 + 291 - - SAOUHSC_00160 SAOUHSC_00160 - +conserved hypothetical protein 173783 174064 - 93 - - SAOUHSC_00161 SAOUHSC_00161 - +type I site-specific deoxyribonuclease%2C HsdR family%2C putative 174277 177066 + 929 - - SAOUHSC_00162 SAOUHSC_00162 - +conserved hypothetical protein 177271 178113 + 280 - - SAOUHSC_00163 SAOUHSC_00163 - +conserved hypothetical protein 178115 179038 + 307 - - SAOUHSC_00164 SAOUHSC_00164 - +conserved hypothetical protein 179025 180137 + 370 - - SAOUHSC_00166 SAOUHSC_00166 - +peptide ABC transporter%2C ATP-binding protein%2C putative 180402 181994 - 530 - - SAOUHSC_00167 SAOUHSC_00167 - +conserved hypothetical protein 181951 183429 + 492 - - SAOUHSC_00168 SAOUHSC_00168 - +peptide ABC transporter%2C permease protein%2C putative 183435 184598 + 387 - - SAOUHSC_00169 SAOUHSC_00169 - +conserved hypothetical protein 184615 186390 + 591 - - SAOUHSC_00170 SAOUHSC_00170 - +gamma-glutamyltranspeptidase%2C putative 186428 188434 + 668 - - SAOUHSC_00171 SAOUHSC_00171 - +conserved hypothetical protein 188732 189505 - 257 - - SAOUHSC_00172 SAOUHSC_00172 - +FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds 189695 190321 - 208 - - SAOUHSC_00173 SAOUHSC_00173 - +M23/M37 peptidase domain protein 190530 191108 + 192 - - SAOUHSC_00174 SAOUHSC_00174 - +multiple sugar-binding transport ATP-binding protein%2C putative 191491 192588 + 365 - - SAOUHSC_00175 SAOUHSC_00175 - +bacterial extracellular solute-binding protein%2C putative 192601 193872 + 423 - - SAOUHSC_00176 SAOUHSC_00176 - +maltose ABC transporter%2C permease protein%2C putative 193875 195143 + 422 - - SAOUHSC_00177 SAOUHSC_00177 - +maltose ABC transporter%2C permease protein 195145 195984 + 279 - - SAOUHSC_00178 SAOUHSC_00178 - +conserved hypothetical protein 196058 197134 + 358 - - SAOUHSC_00179 SAOUHSC_00179 - +conserved hypothetical protein 197159 198199 + 346 - - SAOUHSC_00180 SAOUHSC_00180 - +conserved hypothetical protein 198254 199222 + 322 - - SAOUHSC_00181 SAOUHSC_00181 - +conserved hypothetical protein 199583 200155 - 190 - - SAOUHSC_00182 SAOUHSC_00182 - +cytoplasmic membrane protein that functions as a monomer%3B catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate 200310 201689 + 459 - - uhpT SAOUHSC_00183 - +Response regulator receiver domain protein 202048 202806 - 252 - - SAOUHSC_00184 SAOUHSC_00184 - +conserved hypothetical protein 202799 204355 - 518 - - SAOUHSC_00185 SAOUHSC_00185 - +lipoprotein%2C putative 204352 205320 - 322 - - SAOUHSC_00186 SAOUHSC_00186 - +formate acetyltransferase 205908 208157 + 749 - - SAOUHSC_00187 SAOUHSC_00187 - +pyruvate formate-lyase 1 activating enzyme%2C putative 208180 208935 + 251 - - SAOUHSC_00188 SAOUHSC_00188 - +conserved hypothetical protein 209271 211034 + 587 - - SAOUHSC_00190 SAOUHSC_00190 - +conserved hypothetical protein 211198 211542 - 114 - - SAOUHSC_00191 SAOUHSC_00191 - +coagulase 211732 213642 + 636 - - SAOUHSC_00192 SAOUHSC_00192 - +- 213824 213931 - 35 - - SAOUHSC_00193 SAOUHSC_00193 - +acetyl-CoA acetyltransferase%2C putative 214246 215430 - 394 - - SAOUHSC_00195 SAOUHSC_00195 - +conserved hypothetical protein 215460 217721 - 753 - - SAOUHSC_00196 SAOUHSC_00196 - +conserved hypothetical protein 217907 219118 - 403 - - SAOUHSC_00197 SAOUHSC_00197 - +conserved hypothetical protein 219230 220735 - 501 - - SAOUHSC_00198 SAOUHSC_00198 - +conserved hypothetical protein 220761 222338 - 525 - - SAOUHSC_00199 SAOUHSC_00199 - +membrane protein%2C putative 222779 223921 + 380 - - SAOUHSC_00200 SAOUHSC_00200 - +conserved hypothetical protein 224235 225647 - 470 - - SAOUHSC_00201 SAOUHSC_00201 - +conserved hypothetical protein 225908 226264 - 118 - - SAOUHSC_00202 SAOUHSC_00202 - +conserved hypothetical protein 226421 226594 - 57 - - SAOUHSC_00203 SAOUHSC_00203 - +Globin domain protein 226620 227765 - 381 - - SAOUHSC_00204 SAOUHSC_00204 - +- 227920 228027 + 35 - - SAOUHSC_00205 SAOUHSC_00205 - +L-lactate dehydrogenase 228482 229291 + 269 - - SAOUHSC_00206 SAOUHSC_00206 - +- 229502 229645 + 47 - - SAOUHSC_00208 SAOUHSC_00208 - +PTS system%2C glucose-specific IIBC component%2C putative 229611 231140 - 509 - - SAOUHSC_00209 SAOUHSC_00209 - +conserved hypothetical protein 231502 232437 + 311 - - SAOUHSC_00211 SAOUHSC_00211 - +conserved hypothetical protein 232547 232645 + 32 - - SAOUHSC_00212 SAOUHSC_00212 - +conserved hypothetical protein 232776 234872 + 698 - - SAOUHSC_00213 SAOUHSC_00213 - +phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2%2C putative 234857 235324 + 155 - - SAOUHSC_00214 SAOUHSC_00214 - +PTS system component%2C putative 235347 235625 + 92 - - SAOUHSC_00215 SAOUHSC_00215 - +PTS system component 235852 237111 + 419 - - SAOUHSC_00216 SAOUHSC_00216 - +sorbitol dehydrogenase%2C putative 237129 238184 + 351 - - SAOUHSC_00217 SAOUHSC_00217 - +conserved hypothetical protein 238186 238332 + 48 - - SAOUHSC_00218 SAOUHSC_00218 - +conserved hypothetical protein 238356 239399 + 347 - - SAOUHSC_00219 SAOUHSC_00219 - +4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers 239969 240643 + 224 - - SAOUHSC_00220 SAOUHSC_00220 - +alcohol dehydrogenase%2C zinc-containing 240636 241661 + 341 - - SAOUHSC_00221 SAOUHSC_00221 - +tagB protein%2C putative 241836 243377 + 513 - - SAOUHSC_00222 SAOUHSC_00222 - +teichoic acid biosynthesis protein F%2C putative 243805 244974 + 389 - - SAOUHSC_00223 SAOUHSC_00223 - +4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers 245250 245966 + 238 - - ispD SAOUHSC_00225 - +conserved hypothetical protein 245959 246984 + 341 - - SAOUHSC_00226 SAOUHSC_00226 - +conserved hypothetical protein 247006 248694 + 562 - - SAOUHSC_00227 SAOUHSC_00227 - +conserved hypothetical protein 248727 250451 + 574 - - SAOUHSC_00228 SAOUHSC_00228 - +involved in peptidoglycan cross-linking 250591 251265 + 224 - - SAOUHSC_00229 SAOUHSC_00229 - +two-component sensor histidine kinase%2C putative 251527 253266 + 579 - - SAOUHSC_00230 SAOUHSC_00230 - +two-component response regulator%2C putative 253269 254009 + 246 - - SAOUHSC_00231 SAOUHSC_00231 - +negatively regulates murein hydrolase activity 254122 254565 + 147 - - SAOUHSC_00232 SAOUHSC_00232 - +in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases 254558 255259 + 233 - - SAOUHSC_00233 SAOUHSC_00233 - +conserved hypothetical protein 255367 256071 - 234 - - SAOUHSC_00234 SAOUHSC_00234 - +conserved hypothetical protein 256220 257011 + 263 - - SAOUHSC_00235 SAOUHSC_00235 - +6-phospho-beta-glucosidase%2C putative 257027 258463 + 478 - - SAOUHSC_00236 SAOUHSC_00236 - +conserved hypothetical protein 258896 259657 - 253 - - SAOUHSC_00237 SAOUHSC_00237 - +- 259676 259810 + 44 - - SAOUHSC_00238 SAOUHSC_00238 - +ribokinase%2C putative 259908 260822 - 304 - - SAOUHSC_00239 SAOUHSC_00239 - +cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source 260850 261254 - 134 - - SAOUHSC_00240 SAOUHSC_00240 - +conserved hypothetical protein 261269 262150 - 293 - - SAOUHSC_00241 SAOUHSC_00241 - +conserved hypothetical protein 262382 263380 - 332 - - SAOUHSC_00242 SAOUHSC_00242 - +NADH dehydrogenase subunit%2C putative 263531 263710 + 59 - - SAOUHSC_00243 SAOUHSC_00243 - +conserved hypothetical protein 263760 264152 + 130 - - SAOUHSC_00244 SAOUHSC_00244 - +drug transporter%2C putative 264825 266201 - 458 - - SAOUHSC_00246 SAOUHSC_00246 - +conserved hypothetical protein 266435 267427 + 330 - - SAOUHSC_00247 SAOUHSC_00247 - +peptidoglycan hydrolase%2C putative 267753 268703 + 316 - - SAOUHSC_00248 SAOUHSC_00248 - +conserved hypothetical protein 268755 269414 - 219 - - SAOUHSC_00249 SAOUHSC_00249 - +conserved hypothetical protein 269428 270348 - 306 - - SAOUHSC_00250 SAOUHSC_00250 - +conserved hypothetical protein 270345 271511 - 388 - - SAOUHSC_00251 SAOUHSC_00251 - +conserved hypothetical protein 271579 273102 - 507 - - SAOUHSC_00253 SAOUHSC_00253 - +conserved hypothetical protein 273373 274026 + 217 - - SAOUHSC_00254 SAOUHSC_00254 - +conserved hypothetical protein 274060 274647 + 195 - - SAOUHSC_00255 SAOUHSC_00255 - +conserved hypothetical protein 274790 275683 - 297 - - SAOUHSC_00256 SAOUHSC_00256 - +conserved hypothetical protein 275931 276224 + 97 - - SAOUHSC_00257 SAOUHSC_00257 - +conserved hypothetical protein 276308 279337 + 1009 - - SAOUHSC_00258 SAOUHSC_00258 - +conserved hypothetical protein 279337 279795 + 152 - - SAOUHSC_00259 SAOUHSC_00259 - +conserved hypothetical protein 279728 280009 + 93 - - SAOUHSC_00260 SAOUHSC_00260 - +conserved hypothetical protein 280022 281356 + 444 - - SAOUHSC_00261 SAOUHSC_00261 - +conserved hypothetical protein 281378 285817 + 1479 - - SAOUHSC_00262 SAOUHSC_00262 - +conserved hypothetical protein 285847 286239 + 130 - - SAOUHSC_00264 SAOUHSC_00264 - +conserved hypothetical protein 286255 286569 + 104 - - SAOUHSC_00265 SAOUHSC_00265 - +conserved hypothetical protein 286569 287243 + 224 - - SAOUHSC_00266 SAOUHSC_00266 - +conserved hypothetical protein 287243 287560 + 105 - - SAOUHSC_00267 SAOUHSC_00267 - +- 287570 289414 + 614 - - SAOUHSC_00268 SAOUHSC_00268 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gumbel-sites1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,1011 @@ +#Gumbel +#Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit gumbel transit-co1-rep1_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep3_smol.wig transit-in1_smol.prot gumbel-sites1_smol.txt -s 1000 -b 100 +#Data: b'transit-co1-rep1_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep3_smol.wig' +#Annotation path: b'transit-in1_smol.prot' +#FDR Corrected thresholds: 0.989000, 0.529000 +#MH Acceptance-Rate: 79.07% +#Total Iterations Performed: 1099 +#Sample Size: 1000 +#phi estimate: 0.407618 +#Time: 9.027700185775757 +#Orf Name Desc k n r s zbar Call +Rv0001 dnaA chromosomal replication initiation protein 0 31 31 1365 1.000000 E +Rv0002 dnaN DNA polymerase III subunit beta 0 31 31 1167 1.000000 E +Rv0003 recF recombination protein F 10 35 9 140 0.001000 NE +Rv0004 - hypothetical protein Rv0004 0 7 7 327 0.975000 U +Rv0005 gyrB DNA gyrase subunit B 2 42 40 1997 1.000000 E +Rv0006 gyrA DNA gyrase subunit A 1 45 44 2243 1.000000 E +Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 4 10 3 256 0.001000 NE +Rv0008c - POSSIBLE MEMBRANE PROTEIN 3 4 1 2 0.000000 NE +Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 3 7 2 50 0.000000 NE +Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 5 10 4 119 0.000000 NE +Rv0011c - putative septation inhibitor protein 0 3 3 133 -1.000000 S +Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 9 16 3 89 0.000000 NE +Rv0013 trpG para-aminobenzoate synthase component II 2 15 12 528 0.989000 U +Rv0014c pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 0 24 24 1784 1.000000 E +Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 1 16 15 1244 1.000000 E +Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 9 37 8 240 0.001000 NE +Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 14 27 4 64 0.000000 NE +Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 6 25 12 695 0.965000 U +Rv0019c - hypothetical protein Rv0019c 7 13 2 20 0.000000 NE +Rv0020c TB39.8 hypothetical protein Rv0020c 8 52 43 1029 0.529000 U +Rv0021c - hypothetical protein Rv0021c 18 22 1 2 0.000000 NE +Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 8 0 0 0.000000 NE +Rv0023 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 12 12 582 0.997000 E +Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 7 12 1 2 0.000000 NE +Rv0025 - hypothetical protein Rv0025 5 7 1 2 0.000000 NE +Rv0026 - hypothetical protein Rv0026 8 14 3 188 0.000000 NE +Rv0027 - hypothetical protein Rv0027 2 5 2 64 0.000000 NE +Rv0028 - hypothetical protein Rv0028 3 5 2 111 0.000000 NE +Rv0029 - hypothetical protein Rv0029 13 18 2 30 0.000000 NE +Rv0030 - hypothetical protein Rv0030 1 5 3 86 0.000000 NE +Rv0031 - POSSIBLE REMNANT OF A TRANSPOSASE 0 1 1 2 -1.000000 S +Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 30 57 8 98 0.000000 NE +Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 3 0 0 -1.000000 S +Rv0034 - hypothetical protein Rv0034 5 5 0 0 -1.000000 S +Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 21 25 2 110 0.000000 NE +Rv0036c - hypothetical protein Rv0036c 3 4 1 2 0.000000 NE +Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 18 20 1 2 0.000000 NE +Rv0038 - hypothetical protein Rv0038 6 7 1 2 0.000000 NE +Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 2 4 2 25 0.000000 NE +Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 6 9 2 22 0.000000 NE +Rv0041 leuS leucyl-tRNA synthetase 0 72 72 2800 0.726000 U +Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 4 5 1 2 0.000000 NE +Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 7 10 1 2 0.000000 NE +Rv0044c - POSSIBLE OXIDOREDUCTASE 15 20 1 2 0.000000 NE +Rv0045c - POSSIBLE HYDROLASE 6 7 1 2 0.000000 NE +Rv0046c ino1 MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 0 16 16 1009 1.000000 E +Rv0047c - hypothetical protein Rv0047c 2 7 2 56 0.000000 NE +Rv0048c - POSSIBLE MEMBRANE PROTEIN 14 16 1 2 0.000000 NE +Rv0049 - hypothetical protein Rv0049 6 8 1 2 0.000000 NE +Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 14 37 5 214 0.000000 NE +Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 18 34 4 35 0.000000 NE +Rv0052 - hypothetical protein Rv0052 6 7 1 2 0.000000 NE +Rv0053 rpsF 30S ribosomal protein S6 0 6 6 261 0.984000 U +Rv0054 ssb single-strand DNA-binding protein 0 5 5 218 0.974000 U +Rv0055 rpsR 30S ribosomal protein S18 0 4 4 185 0.942000 U +Rv0056 rplI 50S ribosomal protein L9 3 7 3 200 0.001000 NE +Rv0057 - hypothetical protein Rv0057 7 15 2 14 0.000000 NE +Rv0058 dnaB replicative DNA helicase 0 39 39 2561 1.000000 E +Rv0059 - hypothetical protein Rv0059 16 20 1 2 0.000000 NE +Rv0060 - hypothetical protein Rv0060 1 23 22 998 1.000000 E +Rv0061 - hypothetical protein Rv0061 4 6 1 2 0.000000 NE +Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 15 21 2 137 0.000000 NE +Rv0063 - POSSIBLE OXIDOREDUCTASE 17 23 3 22 0.000000 NE +Rv0064 - hypothetical protein Rv0064 35 68 3 147 0.000000 NE +Rv0065 - hypothetical protein Rv0065 4 8 3 34 0.000000 NE +Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 0 38 38 2152 1.000000 E +Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 3 12 6 111 0.000000 NE +Rv0068 - short chain dehydrogenase 9 12 1 2 0.000000 NE +Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 6 12 2 110 0.000000 NE +Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 12 18 3 199 0.000000 NE +Rv0071 - POSSIBLE MATURASE 6 8 2 8 0.000000 NE +Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 12 16 2 36 0.000000 NE +Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 15 15 0 0 0.000000 NE +Rv0074 - hypothetical protein Rv0074 15 19 1 2 0.000000 NE +Rv0075 - PROBABLE AMINOTRANSFERASE 18 24 2 82 0.000000 NE +Rv0076c - PROBABLE MEMBRANE PROTEIN 3 3 0 0 -1.000000 S +Rv0077c - PROBABLE OXIDOREDUCTASE 10 14 2 44 0.000000 NE +Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 2 8 3 291 0.057000 NE +Rv0078A - hypothetical protein Rv0078A 8 10 1 2 0.000000 NE +Rv0079 - hypothetical protein Rv0079 12 14 1 2 0.000000 NE +Rv0080 - hypothetical protein Rv0080 4 4 0 0 0.000000 NE +Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 4 5 1 2 0.000000 NE +Rv0082 - PROBABLE OXIDOREDUCTASE 4 7 3 35 0.000000 NE +Rv0083 - PROBABLE OXIDOREDUCTASE 18 23 2 67 0.000000 NE +Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 6 9 2 233 0.000000 NE +Rv0085 hycP POSSIBLE HYDROGENASE HYCP 2 4 2 171 0.000000 NE +Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 9 15 1 2 0.000000 NE +Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 6 25 14 845 0.995000 E +Rv0088 - hypothetical protein Rv0088 4 14 7 238 0.004000 NE +Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 8 10 2 37 0.000000 NE +Rv0090 - POSSIBLE MEMBRANE PROTEIN 9 12 1 2 0.000000 NE +Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 8 11 1 2 0.000000 NE +Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 23 30 2 9 0.000000 NE +Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 5 8 1 2 0.000000 NE +Rv0094c - hypothetical protein Rv0094c 14 14 0 0 0.000000 NE +Rv0095c - hypothetical protein Rv0095c 3 9 6 227 0.689000 U +Rv0096 PPE1 PPE FAMILY PROTEIN 25 34 4 76 0.000000 NE +Rv0097 - POSSIBLE OXIDOREDUCTASE 16 26 2 89 0.000000 NE +Rv0098 - hypothetical protein Rv0098 8 11 1 2 0.000000 NE +Rv0099 fadD10 acyl-CoA synthetase 8 26 6 175 0.000000 NE +Rv0100 - hypothetical protein Rv0100 0 0 0 0 -1.000000 S +Rv0101 nrp PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 0 0 0 0 -1.000000 S +Rv0102 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0103c ctpB PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB 0 0 0 0 -1.000000 S +Rv0104 - hypothetical protein Rv0104 0 0 0 0 -1.000000 S +Rv0105c rpmB 50S ribosomal protein L28 0 0 0 0 -1.000000 S +Rv0106 - hypothetical protein Rv0106 0 0 0 0 -1.000000 S +Rv0107c ctpI PROBABLE CATION-TRANSPORTER ATPASE I CTPI 0 0 0 0 -1.000000 S +Rv0108c - hypothetical protein Rv0108c 0 0 0 0 -1.000000 S +Rv0109 PE_PGRS1 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0110 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0111 - POSSIBLE TRANSMEMBRANE ACYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0112 gca POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) 0 0 0 0 -1.000000 S +Rv0113 gmhA PROBABLE SEDOHEPTULOSE-7-PHOSPHATE ISOMERASE GMHA (PHOSPHOHEPTOSE ISOMERASE) 0 0 0 0 -1.000000 S +Rv0114 gmhB POSSIBLE D-ALPHA,BETA-D-HEPTOSE-1,7-BIPHOSPHATE PHOSPHATASE GMHB (D-GLYCERO-D-MANNO-HEPTOSE 7-PHOSPHATE KINASE) 0 0 0 0 -1.000000 S +Rv0115 hddA POSSIBLE D-ALPHA-D-HEPTOSE-7-PHOSPHATE KINASE HDDA 0 0 0 0 -1.000000 S +Rv0116c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0117 oxyS OXIDATIVE STRESS RESPONSE REGULATORY PROTEIN OXYS 0 0 0 0 -1.000000 S +Rv0118c oxcA putative oxalyl-CoA decarboxylase 0 0 0 0 -1.000000 S +Rv0119 fadD7 acyl-CoA synthetase 0 0 0 0 -1.000000 S +Rv0120c fusA2 elongation factor G 0 0 0 0 -1.000000 S +Rv0121c - hypothetical protein Rv0121c 0 0 0 0 -1.000000 S +Rv0122 - hypothetical protein Rv0122 0 0 0 0 -1.000000 S +Rv0123 - hypothetical protein Rv0123 0 0 0 0 -1.000000 S +Rv0124 PE_PGRS2 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0125 pepA PROBABLE SERINE PROTEASE PEPA (SERINE PROTEINASE) (MTB32A) 0 0 0 0 -1.000000 S +Rv0126 treS TREHALOSE SYNTHASE TRES 0 0 0 0 -1.000000 S +Rv0127 - hypothetical protein Rv0127 0 0 0 0 -1.000000 S +Rv0128 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0129c fbpC SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) 0 0 0 0 -1.000000 S +Rv0130 - hypothetical protein Rv0130 0 0 0 0 -1.000000 S +Rv0131c fadE1 PROBABLE ACYL-CoA DEHYDROGENASE FADE1 0 0 0 0 -1.000000 S +Rv0132c fgd2 PUTATIVE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD2 0 0 0 0 -1.000000 S +Rv0133 - PROBABLE ACETYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0134 ephF POSSIBLE EPOXIDE HYDROLASE EPHF (EPOXIDE HYDRATASE) (ARENE-OXIDE HYDRATASE) 0 0 0 0 -1.000000 S +Rv0135c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0136 cyp138 PROBABLE CYTOCHROME P450 138 CYP138 0 0 0 0 -1.000000 S +Rv0137c msrA methionine sulfoxide reductase A 0 0 0 0 -1.000000 S +Rv0138 - hypothetical protein Rv0138 0 0 0 0 -1.000000 S +Rv0139 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0140 - hypothetical protein Rv0140 0 0 0 0 -1.000000 S +Rv0141c - hypothetical protein Rv0141c 0 0 0 0 -1.000000 S +Rv0142 - hypothetical protein Rv0142 0 0 0 0 -1.000000 S +Rv0143c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0144 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0145 - hypothetical protein Rv0145 0 0 0 0 -1.000000 S +Rv0146 - hypothetical protein Rv0146 0 0 0 0 -1.000000 S +Rv0147 - PROBABLE ALDEHYDE DEHYDROGENASE (NAD+) DEPENDENT 0 0 0 0 -1.000000 S +Rv0148 - PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE 0 0 0 0 -1.000000 S +Rv0149 - POSSIBLE QUINONE OXIDOREDUCTASE (NADPH:QUINONE OXIDOREDUCTASE) (ZETA-CRYSTALLIN) 0 0 0 0 -1.000000 S +Rv0150c - hypothetical protein Rv0150c 0 0 0 0 -1.000000 S +Rv0151c PE1 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0152c PE2 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0153c ptbB PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPB (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) 0 0 0 0 -1.000000 S +Rv0154c fadE2 PROBABLE ACYL-CoA DEHYDROGENASE FADE2 0 0 0 0 -1.000000 S +Rv0155 pntAa PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAA 0 0 0 0 -1.000000 S +Rv0156 pntAb PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB 0 0 0 0 -1.000000 S +Rv0157 pntB PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT BETA) PNTB 0 0 0 0 -1.000000 S +Rv0158 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0159c PE3 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0160c PE4 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0161 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0162c adhE1 PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE (E SUBUNIT) ADHE 0 0 0 0 -1.000000 S +Rv0163 - hypothetical protein Rv0163 0 0 0 0 -1.000000 S +Rv0164 TB18.5 hypothetical protein Rv0164 0 0 0 0 -1.000000 S +Rv0165c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0 0 0 -1.000000 S +Rv0166 fadD5 acyl-CoA synthetase 0 0 0 0 -1.000000 S +Rv0167 yrbE1A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A 0 0 0 0 -1.000000 S +Rv0168 yrbE1B CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1B 0 0 0 0 -1.000000 S +Rv0169 mce1A MCE-FAMILY PROTEIN MCE1A 0 0 0 0 -1.000000 S +Rv0170 mce1B MCE-FAMILY PROTEIN MCE1B 0 0 0 0 -1.000000 S +Rv0171 mce1C MCE-FAMILY PROTEIN MCE1C 0 0 0 0 -1.000000 S +Rv0172 mce1D MCE-FAMILY PROTEIN MCE1D 0 0 0 0 -1.000000 S +Rv0173 lprK POSSIBLE MCE-FAMILY LIPOPROTEIN LPRK (MCE-FAMILY LIPOPROTEIN MCE1E) 0 0 0 0 -1.000000 S +Rv0174 mce1F MCE-FAMILY PROTEIN MCE1F 0 0 0 0 -1.000000 S +Rv0175 - PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0176 - PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0177 - PROBABLE CONSERVED MCE ASSOCIATED PROTEIN 0 0 0 0 -1.000000 S +Rv0178 - PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0179c lprO POSSIBLE LIPOPROTEIN LPRO 0 0 0 0 -1.000000 S +Rv0180c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0181c - hypothetical protein Rv0181c 0 0 0 0 -1.000000 S +Rv0182c sigG RNA polymerase factor sigma-70 0 0 0 0 -1.000000 S +Rv0183 - POSSIBLE LYSOPHOSPHOLIPASE 0 0 0 0 -1.000000 S +Rv0184 - hypothetical protein Rv0184 0 0 0 0 -1.000000 S +Rv0185 - hypothetical protein Rv0185 0 0 0 0 -1.000000 S +Rv0186 bglS PROBABLE BETA-GLUCOSIDASE BGLS (GENTIOBIASE) (CELLOBIASE) (BETA-D-GLUCOSIDE GLUCOHYDROLASE) 0 0 0 0 -1.000000 S +Rv0187 - PROBABLE O-METHYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0188 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0189c ilvD dihydroxy-acid dehydratase 0 0 0 0 -1.000000 S +Rv0190 - hypothetical protein Rv0190 0 0 0 0 -1.000000 S +Rv0191 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0192 - hypothetical protein Rv0192 0 0 0 0 -1.000000 S +Rv0192A - CONSERVED SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0193c - hypothetical protein Rv0193c 0 0 0 0 -1.000000 S +Rv0194 - PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER 0 0 0 0 -1.000000 S +Rv0195 - POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 0 0 0 0 -1.000000 S +Rv0196 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0197 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0198c - PROBABLE ZINC METALLOPROTEASE 0 0 0 0 -1.000000 S +Rv0199 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0200 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0201c - hypothetical protein Rv0201c 0 0 0 0 -1.000000 S +Rv0202c mmpL11 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL11 0 0 0 0 -1.000000 S +Rv0203 - POSSIBLE EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0204c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0205 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0206c mmpL3 POSSIBLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL3 0 0 0 0 -1.000000 S +Rv0207c - hypothetical protein Rv0207c 0 0 0 0 -1.000000 S +Rv0208c trmB tRNA (guanine-N(7))-methyltransferase 0 0 0 0 -1.000000 S +Rv0209 - hypothetical protein Rv0209 0 0 0 0 -1.000000 S +Rv0210 - hypothetical protein Rv0210 0 0 0 0 -1.000000 S +Rv0211 pckA phosphoenolpyruvate carboxykinase 0 0 0 0 -1.000000 S +Rv0212c nadR POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) 0 0 0 0 -1.000000 S +Rv0213c - POSSIBLE METHYLTRANSFERASE (METHYLASE) 0 0 0 0 -1.000000 S +Rv0214 fadD4 acyl-CoA synthetase 0 0 0 0 -1.000000 S +Rv0215c fadE3 PROBABLE ACYL-CoA DEHYDROGENASE FADE3 0 0 0 0 -1.000000 S +Rv0216 - hypothetical protein Rv0216 0 0 0 0 -1.000000 S +Rv0217c lipW POSSIBLE ESTERASE LIPW 0 0 0 0 -1.000000 S +Rv0218 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0219 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0220 lipC PROBABLE ESTERASE LIPC 0 0 0 0 -1.000000 S +Rv0221 - hypothetical protein Rv0221 0 0 0 0 -1.000000 S +Rv0222 echA1 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0223c - PROBABLE ALDEHYDE DEHYDROGENASE 0 0 0 0 -1.000000 S +Rv0224c - POSSIBLE METHYLTRANSFERASE (METHYLASE) 0 0 0 0 -1.000000 S +Rv0225 - POSSIBLE CONSERVED PROTEIN 0 0 0 0 -1.000000 S +Rv0226c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0227c - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0228 - PROBABLE INTEGRAL MEMBRANE ACYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0229c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0230c php PROBABLE PHOSPHOTRIESTERASE PHP (PARATHION HYDROLASE) (PTE) (ARYLDIALKYLPHOSPHATASE) (PARAOXONASE) (A-ESTERASE) (ARYLTRIPHOSPHATASE) (PARAOXON HYDROLASE) 0 0 0 0 -1.000000 S +Rv0231 fadE4 PROBABLE ACYL-CoA DEHYDROGENASE FADE4 0 0 0 0 -1.000000 S +Rv0232 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 0 0 0 0 -1.000000 S +Rv0233 nrdB ribonucleotide-diphosphate reductase subunit beta 0 0 0 0 -1.000000 S +Rv0234c gabD1 succinic semialdehyde dehydrogenase 0 0 0 0 -1.000000 S +Rv0235c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0236A - SMALL SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0236c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0237 lpqI PROBABLE CONSERVED LIPOPROTEIN LPQI 0 0 0 0 -1.000000 S +Rv0238 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0239 - hypothetical protein Rv0239 0 0 0 0 -1.000000 S +Rv0240 - hypothetical protein Rv0240 0 0 0 0 -1.000000 S +Rv0241c - hypothetical protein Rv0241c 0 0 0 0 -1.000000 S +Rv0242c fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0 0 0 -1.000000 S +Rv0243 fadA2 acetyl-CoA acetyltransferase 0 0 0 0 -1.000000 S +Rv0244c fadE5 PROBABLE ACYL-CoA DEHYDROGENASE FADE5 0 0 0 0 -1.000000 S +Rv0245 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0246 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0247c - fumarate reductase iron-sulfur subunit 0 0 0 0 -1.000000 S +Rv0248c sdhA succinate dehydrogenase flavoprotein subunit 0 0 0 0 -1.000000 S +Rv0249c - PROBABLE SUCCINATE DEHYDROGENASE 0 0 0 0 -1.000000 S +Rv0250c - hypothetical protein Rv0250c 0 0 0 0 -1.000000 S +Rv0251c hsp HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) 0 0 0 0 -1.000000 S +Rv0252 nirB PROBABLE NITRITE REDUCTASE 0 0 0 0 -1.000000 S +Rv0253 nirD PROBABLE NITRITE REDUCTASE 0 0 0 0 -1.000000 S +Rv0254c cobU PROBABLE BIFUNCTIONAL COBALAMIN BIOSYNTHESIS PROTEIN COBU: COBINAMIDE KINASE + COBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0255c cobQ1 cobyric acid synthase 0 0 0 0 -1.000000 S +Rv0256c PPE2 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0257 - hypothetical protein Rv0257 0 0 0 0 -1.000000 S +Rv0258c - hypothetical protein Rv0258c 0 0 0 0 -1.000000 S +Rv0259c - hypothetical protein Rv0259c 0 0 0 0 -1.000000 S +Rv0260c - bifunctional uroporphyrinogen-III synthetase/response regulator domain protein 0 0 0 0 -1.000000 S +Rv0261c narK3 PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARK3 (NITRITE FACILITATOR) 0 0 0 0 -1.000000 S +Rv0262c aac AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) 0 0 0 0 -1.000000 S +Rv0263c - hypothetical protein Rv0263c 0 0 0 0 -1.000000 S +Rv0264c - hypothetical protein Rv0264c 0 0 0 0 -1.000000 S +Rv0265c - PROBABLE PERIPLASMIC IRON-TRANSPORT LIPOPROTEIN 0 0 0 0 -1.000000 S +Rv0266c oplA PROBABLE 5-OXOPROLINASE OPLA (5-OXO-L-PROLINASE) (PYROGLUTAMASE) (5-OPASE) 0 0 0 0 -1.000000 S +Rv0267 narU PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARU (NITRITE FACILITATOR) 0 0 0 0 -1.000000 S +Rv0268c - hypothetical protein Rv0268c 0 0 0 0 -1.000000 S +Rv0269c - hypothetical protein Rv0269c 0 0 0 0 -1.000000 S +Rv0270 fadD2 acyl-CoA synthetase 0 0 0 0 -1.000000 S +Rv0271c fadE6 PROBABLE ACYL-CoA DEHYDROGENASE FADE6 0 0 0 0 -1.000000 S +Rv0272c - hypothetical protein Rv0272c 0 0 0 0 -1.000000 S +Rv0273c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0274 - hypothetical protein Rv0274 0 0 0 0 -1.000000 S +Rv0275c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0276 - hypothetical protein Rv0276 0 0 0 0 -1.000000 S +Rv0277c - hypothetical protein Rv0277c 0 0 0 0 -1.000000 S +Rv0278c PE_PGRS3 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0279c PE_PGRS4 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0280 PPE3 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0281 - hypothetical protein Rv0281 0 0 0 0 -1.000000 S +Rv0282 - hypothetical protein Rv0282 0 0 0 0 -1.000000 S +Rv0283 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0284 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0285 PE5 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0286 PPE4 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0287 esxG ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) 0 0 0 0 -1.000000 S +Rv0288 esxH LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) 0 0 0 0 -1.000000 S +Rv0289 - hypothetical protein Rv0289 0 0 0 0 -1.000000 S +Rv0290 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0291 mycP3 PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) 0 0 0 0 -1.000000 S +Rv0292 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0293c - hypothetical protein Rv0293c 0 0 0 0 -1.000000 S +Rv0294 tam PROBABLE TRANS-ACONITATE METHYLTRANSFERASE TAM 0 0 0 0 -1.000000 S +Rv0295c - hypothetical protein Rv0295c 0 0 0 0 -1.000000 S +Rv0296c - PROBABLE SULFATASE 0 0 0 0 -1.000000 S +Rv0297 PE_PGRS5 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0298 - hypothetical protein Rv0298 0 0 0 0 -1.000000 S +Rv0299 - hypothetical protein Rv0299 0 0 0 0 -1.000000 S +Rv0300 - hypothetical protein Rv0300 0 0 0 0 -1.000000 S +Rv0301 - hypothetical protein Rv0301 0 0 0 0 -1.000000 S +Rv0302 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 0 0 0 0 -1.000000 S +Rv0303 - PROBABLE DEHYDROGENASE/REDUCTASE 0 0 0 0 -1.000000 S +Rv0304c PPE5 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0305c PPE6 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0306 - PUTATIVE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0307c - hypothetical protein Rv0307c 0 0 0 0 -1.000000 S +Rv0308 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0309 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0310c - hypothetical protein Rv0310c 0 0 0 0 -1.000000 S +Rv0311 - hypothetical protein Rv0311 0 0 0 0 -1.000000 S +Rv0312 - CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN 0 0 0 0 -1.000000 S +Rv0313 - hypothetical protein Rv0313 0 0 0 0 -1.000000 S +Rv0314c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0315 - POSSIBLE BETA-1,3-GLUCANASE PRECURSOR 0 0 0 0 -1.000000 S +Rv0316 - POSSIBLE MUCONOLACTONE ISOMERASE 0 0 0 0 -1.000000 S +Rv0317c glpQ2 POSSIBLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ2 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) 0 0 0 0 -1.000000 S +Rv0318c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0319 pcp pyrrolidone-carboxylate peptidase 0 0 0 0 -1.000000 S +Rv0320 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0321 dcd deoxycytidine triphosphate deaminase 0 0 0 0 -1.000000 S +Rv0322 udgA PROBABLE UDP-GLUCOSE 6-DEHYDROGENASE UDGA (UDP-GLC DEHYDROGENASE) (UDP-GLCDH) (UDPGDH) 0 0 0 0 -1.000000 S +Rv0323c - hypothetical protein Rv0323c 0 0 0 0 -1.000000 S +Rv0324 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 0 0 0 0 -1.000000 S +Rv0325 - hypothetical protein Rv0325 0 0 0 0 -1.000000 S +Rv0326 - hypothetical protein Rv0326 0 0 0 0 -1.000000 S +Rv0327c cyp135A1 POSSIBLE CYTOCHROME P450 135A1 CYP135A1 0 0 0 0 -1.000000 S +Rv0328 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR/ACRR-FAMILY) 0 0 0 0 -1.000000 S +Rv0329c - hypothetical protein Rv0329c 0 0 0 0 -1.000000 S +Rv0330c - hypothetical protein Rv0330c 0 0 0 0 -1.000000 S +Rv0331 - POSSIBLE DEHYDROGENASE/REDUCTASE 0 0 0 0 -1.000000 S +Rv0332 - hypothetical protein Rv0332 0 0 0 0 -1.000000 S +Rv0333 - hypothetical protein Rv0333 0 0 0 0 -1.000000 S +Rv0334 rmlA ALPHA-D-GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE RMLA (DTDP-GLUCOSE SYNTHASE) (DTDP-GLUCOSE PYROPHOSPHORYLASE) 0 0 0 0 -1.000000 S +Rv0335c PE6 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0336 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0337c aspC aminotransferase AlaT 0 0 0 0 -1.000000 S +Rv0338c - PROBABLE IRON-SULFUR-BINDING REDUCTASE 0 0 0 0 -1.000000 S +Rv0339c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0340 - hypothetical protein Rv0340 0 0 0 0 -1.000000 S +Rv0341 iniB ISONIAZID INDUCTIBLE GENE PROTEIN INIB 0 0 0 0 -1.000000 S +Rv0342 iniA ISONIAZID INDUCTIBLE GENE PROTEIN INIA 0 0 0 0 -1.000000 S +Rv0343 iniC ISONIAZID INDUCTIBLE GENE PROTEIN INIC 0 0 0 0 -1.000000 S +Rv0344c lpqJ PROBABLE LIPOPROTEIN LPQJ 0 0 0 0 -1.000000 S +Rv0345 - hypothetical protein Rv0345 0 0 0 0 -1.000000 S +Rv0346c ansP2 POSSIBLE L-ASPARAGINE PERMEASE ANSP2 (L-ASPARAGINE TRANSPORT PROTEIN) 0 0 0 0 -1.000000 S +Rv0347 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0348 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0349 - hypothetical protein Rv0349 0 0 0 0 -1.000000 S +Rv0350 dnaK molecular chaperone DnaK 0 0 0 0 -1.000000 S +Rv0351 grpE PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) 0 0 0 0 -1.000000 S +Rv0352 dnaJ1 PROBABLE CHAPERONE PROTEIN DNAJ1 0 0 0 0 -1.000000 S +Rv0353 hspR PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) 0 0 0 0 -1.000000 S +Rv0354c PPE7 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0355c PPE8 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0356c - hypothetical protein Rv0356c 0 0 0 0 -1.000000 S +Rv0357c purA adenylosuccinate synthetase 0 0 0 0 -1.000000 S +Rv0358 - hypothetical protein Rv0358 0 0 0 0 -1.000000 S +Rv0359 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0360c - hypothetical protein Rv0360c 0 0 0 0 -1.000000 S +Rv0361 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0362 mgtE POSSIBLE Mg2+ TRANSPORT TRANSMEMBRANE PROTEIN MGTE 0 0 0 0 -1.000000 S +Rv0363c fba fructose-bisphosphate aldolase 0 0 0 0 -1.000000 S +Rv0364 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0365c - hypothetical protein Rv0365c 0 0 0 0 -1.000000 S +Rv0366c - hypothetical protein Rv0366c 0 0 0 0 -1.000000 S +Rv0367c - hypothetical protein Rv0367c 0 0 0 0 -1.000000 S +Rv0368c - hypothetical protein Rv0368c 0 0 0 0 -1.000000 S +Rv0369c - POSSIBLE MEMBRANE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0370c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0371c - hypothetical protein Rv0371c 0 0 0 0 -1.000000 S +Rv0372c - hypothetical protein Rv0372c 0 0 0 0 -1.000000 S +Rv0373c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (LARGE CHAIN) 0 0 0 0 -1.000000 S +Rv0374c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (SMALL CHAIN) 0 0 0 0 -1.000000 S +Rv0375c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (MEDIUM CHAIN) 0 0 0 0 -1.000000 S +Rv0376c - hypothetical protein Rv0376c 0 0 0 0 -1.000000 S +Rv0377 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LYSR-FAMILY) 0 0 0 0 -1.000000 S +Rv0378 - CONSERVED HYPOTHETICAL GLYCINE RICH PROTEIN 0 0 0 0 -1.000000 S +Rv0379 secE2 POSSIBLE PROTEIN TRANSPORT PROTEIN SECE2 0 0 0 0 -1.000000 S +Rv0380c - POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) 0 0 0 0 -1.000000 S +Rv0381c - hypothetical protein Rv0381c 0 0 0 0 -1.000000 S +Rv0382c pyrE orotate phosphoribosyltransferase 0 0 0 0 -1.000000 S +Rv0383c - POSSIBLE CONSERVED SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0384c clpB PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) 0 0 0 0 -1.000000 S +Rv0385 - hypothetical protein Rv0385 0 0 0 0 -1.000000 S +Rv0386 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) 0 0 0 0 -1.000000 S +Rv0387c - hypothetical protein Rv0387c 0 0 0 0 -1.000000 S +Rv0388c PPE9 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0389 purT phosphoribosylglycinamide formyltransferase 2 0 0 0 0 -1.000000 S +Rv0390 - hypothetical protein Rv0390 0 0 0 0 -1.000000 S +Rv0391 metZ O-succinylhomoserine sulfhydrylase 0 0 0 0 -1.000000 S +Rv0392c ndhA PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA 0 0 0 0 -1.000000 S +Rv0393 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0394c - POSSIBLE SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0395 - hypothetical protein Rv0395 0 0 0 0 -1.000000 S +Rv0396 - hypothetical protein Rv0396 0 0 0 0 -1.000000 S +Rv0397 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0398c - POSSIBLE SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0399c lpqK POSSIBLE CONSERVED LIPOPROTEIN LPQK 0 0 0 0 -1.000000 S +Rv0400c fadE7 ACYL-CoA DEHYDROGENASE FADE7 0 0 0 0 -1.000000 S +Rv0401 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0402c mmpL1 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL1 0 0 0 0 -1.000000 S +Rv0403c mmpS1 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS1 0 0 0 0 -1.000000 S +Rv0404 fadD30 acyl-CoA synthetase 0 0 0 0 -1.000000 S +Rv0405 pks6 PROBABLE MEMBRANE BOUND POLYKETIDE SYNTHASE PKS6 0 0 0 0 -1.000000 S +Rv0406c - BETA LACTAMASE LIKE PROTEIN 0 0 0 0 -1.000000 S +Rv0407 fgd1 PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1 0 0 0 0 -1.000000 S +Rv0408 pta phosphate acetyltransferase 0 0 0 0 -1.000000 S +Rv0409 ackA acetate kinase 0 0 0 0 -1.000000 S +Rv0410c pknG SERINE/THREONINE-PROTEIN KINASE PKNG (PROTEIN KINASE G) (STPK G) 0 0 0 0 -1.000000 S +Rv0411c glnH PROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP) 0 0 0 0 -1.000000 S +Rv0412c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0413 mutT3 POSSIBLE MUTATOR PROTEIN MUTT3 (7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE) (8-OXO-DGTPASE) (DGTP PYROPHOSPHOHYDROLASE) 0 0 0 0 -1.000000 S +Rv0414c thiE thiamine-phosphate pyrophosphorylase 0 0 0 0 -1.000000 S +Rv0415 thiO POSSIBLE THIAMINE BIOSYNTHESIS OXIDOREDUCTASE THIO 0 0 0 0 -1.000000 S +Rv0416 thiS sulfur carrier protein ThiS 0 0 0 0 -1.000000 S +Rv0417 thiG thiazole synthase 0 0 0 0 -1.000000 S +Rv0418 lpqL PROBABLE LIPOPROTEIN AMINOPEPTIDASE LPQL 0 0 0 0 -1.000000 S +Rv0419 lpqM POSSIBLE LIPOPROTEIN PEPTIDASE LPQM 0 0 0 0 -1.000000 S +Rv0420c - POSSIBLE TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0421c - hypothetical protein Rv0421c 0 0 0 0 -1.000000 S +Rv0422c thiD phosphomethylpyrimidine kinase 0 0 0 0 -1.000000 S +Rv0423c thiC thiamine biosynthesis protein ThiC 0 0 0 0 -1.000000 S +Rv0424c - hypothetical protein Rv0424c 0 0 0 0 -1.000000 S +Rv0425c ctpH POSSIBLE METAL CATION TRANSPORTING P-TYPE ATPASE CTPH 0 0 0 0 -1.000000 S +Rv0426c - POSSIBLE TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0427c xthA PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III) (EXO III) (AP ENDONUCLEASE VI) 0 0 0 0 -1.000000 S +Rv0428c - hypothetical protein Rv0428c 0 0 0 0 -1.000000 S +Rv0429c def peptide deformylase 0 0 0 0 -1.000000 S +Rv0430 - hypothetical protein Rv0430 0 0 0 0 -1.000000 S +Rv0431 - PUTATIVE TUBERCULIN RELATED PEPTIDE 0 0 0 0 -1.000000 S +Rv0432 sodC PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE 0 0 0 0 -1.000000 S +Rv0433 - hypothetical protein Rv0433 0 0 0 0 -1.000000 S +Rv0434 - hypothetical protein Rv0434 0 0 0 0 -1.000000 S +Rv0435c - PUTATIVE CONSERVED ATPASE 0 0 0 0 -1.000000 S +Rv0436c pssA PROBABLE CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE PSSA (PS SYNTHASE) (PHOSPHATIDYLSERINE SYNTHASE) 0 0 0 0 -1.000000 S +Rv0437c psd phosphatidylserine decarboxylase 0 0 0 0 -1.000000 S +Rv0438c moeA2 PROBABLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA2 0 0 0 0 -1.000000 S +Rv0439c - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0440 groEL chaperonin GroEL 0 0 0 0 -1.000000 S +Rv0441c - hypothetical protein Rv0441c 0 0 0 0 -1.000000 S +Rv0442c PPE10 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0443 - hypothetical protein Rv0443 0 0 0 0 -1.000000 S +Rv0444c - hypothetical protein Rv0444c 0 0 0 0 -1.000000 S +Rv0445c sigK RNA polymerase sigma factor SigK 0 0 0 0 -1.000000 S +Rv0446c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0447c ufaA1 PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) 0 0 0 0 -1.000000 S +Rv0448c - hypothetical protein Rv0448c 0 0 0 0 -1.000000 S +Rv0449c - hypothetical protein Rv0449c 0 0 0 0 -1.000000 S +Rv0450c mmpL4 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 0 0 0 0 -1.000000 S +Rv0451c mmpS4 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 0 0 0 0 -1.000000 S +Rv0452 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0453 PPE11 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0454 - hypothetical protein Rv0454 0 0 0 0 -1.000000 S +Rv0455c - hypothetical protein Rv0455c 0 0 0 0 -1.000000 S +Rv0456A - hypothetical protein Rv0456A 0 0 0 0 -1.000000 S +Rv0456c echA2 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0457c - PROBABLE PEPTIDASE 0 0 0 0 -1.000000 S +Rv0458 - PROBABLE ALDEHYDE DEHYDROGENASE 0 0 0 0 -1.000000 S +Rv0459 - hypothetical protein Rv0459 0 0 0 0 -1.000000 S +Rv0460 - CONSERVED HYDROPHOBIC PROTEIN 0 0 0 0 -1.000000 S +Rv0461 - PROBABLE TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0462 lpd dihydrolipoamide dehydrogenase 0 0 0 0 -1.000000 S +Rv0463 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0464c - hypothetical protein Rv0464c 0 0 0 0 -1.000000 S +Rv0465c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0466 - hypothetical protein Rv0466 0 0 0 0 -1.000000 S +Rv0467 icl isocitrate lyase 0 0 0 0 -1.000000 S +Rv0468 fadB2 3-hydroxybutyryl-CoA dehydrogenase 0 0 0 0 -1.000000 S +Rv0469 umaA POSSIBLE MYCOLIC ACID SYNTHASE UMAA 0 0 0 0 -1.000000 S +Rv0470A - hypothetical protein Rv0470A 0 0 0 0 -1.000000 S +Rv0470c pcaA MYCOLIC ACID SYNTHASE PCAA (CYCLOPROPANE SYNTHASE) 0 0 0 0 -1.000000 S +Rv0471c - hypothetical protein Rv0471c 0 0 0 0 -1.000000 S +Rv0472c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0473 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0474 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0475 hbhA IRON-REGULATED HEPARIN BINDING HEMAGGLUTININ HBHA (ADHESIN) 0 0 0 0 -1.000000 S +Rv0476 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0477 - POSSIBLE CONSERVED SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0478 deoC deoxyribose-phosphate aldolase 0 0 0 0 -1.000000 S +Rv0479c - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0480c - POSSIBLE AMIDOHYDROLASE 0 0 0 0 -1.000000 S +Rv0481c - hypothetical protein Rv0481c 0 0 0 0 -1.000000 S +Rv0482 murB UDP-N-acetylenolpyruvoylglucosamine reductase 0 0 0 0 -1.000000 S +Rv0483 lprQ PROBABLE CONSERVED LIPOPROTEIN LPRQ 0 0 0 0 -1.000000 S +Rv0484c - PROBABLE SHORT-CHAIN TYPE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0485 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0486 - MANNOSYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0487 - hypothetical protein Rv0487 0 0 0 0 -1.000000 S +Rv0488 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0489 gpm1 phosphoglyceromutase 0 0 0 0 -1.000000 S +Rv0490 senX3 PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 0 0 0 0 -1.000000 S +Rv0491 regX3 TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) 0 0 0 0 -1.000000 S +Rv0492A - hypothetical protein Rv0492A 0 0 0 0 -1.000000 S +Rv0492c - PROBABLE OXIDOREDUCTASE GMC-TYPE 0 0 0 0 -1.000000 S +Rv0493c - hypothetical protein Rv0493c 0 0 0 0 -1.000000 S +Rv0494 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0 0 0 -1.000000 S +Rv0495c - hypothetical protein Rv0495c 0 0 0 0 -1.000000 S +Rv0496 - hypothetical protein Rv0496 0 0 0 0 -1.000000 S +Rv0497 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0498 - hypothetical protein Rv0498 0 0 0 0 -1.000000 S +Rv0499 - hypothetical protein Rv0499 0 0 0 0 -1.000000 S +Rv0500 proC pyrroline-5-carboxylate reductase 0 0 0 0 -1.000000 S +Rv0500A - hypothetical protein Rv0500A 0 0 0 0 -1.000000 S +Rv0500B - hypothetical protein Rv0500B 0 0 0 0 -1.000000 S +Rv0501 galE2 POSSIBLE UDP-GLUCOSE 4-EPIMERASE GALE2 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 0 0 0 0 -1.000000 S +Rv0502 - hypothetical protein Rv0502 0 0 0 0 -1.000000 S +Rv0503c cmaA2 CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 2 CMAA2 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 2) (MYCOLIC ACID TRANS-CYCLOPROPANE SYNTHETASE) 0 0 0 0 -1.000000 S +Rv0504c - hypothetical protein Rv0504c 0 0 0 0 -1.000000 S +Rv0505c serB1 POSSIBLE PHOSPHOSERINE PHOSPHATASE SERB1 (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) 0 0 0 0 -1.000000 S +Rv0506 mmpS2 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS2 0 0 0 0 -1.000000 S +Rv0507 mmpL2 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL2 0 0 0 0 -1.000000 S +Rv0508 - hypothetical protein Rv0508 0 0 0 0 -1.000000 S +Rv0509 hemA glutamyl-tRNA reductase 0 0 0 0 -1.000000 S +Rv0510 hemC porphobilinogen deaminase 0 0 0 0 -1.000000 S +Rv0511 hemD PROBABLE UROPORPHYRIN-III C-METHYLTRANSFERASE HEMD (UROPORPHYRINOGEN III METHYLASE) (UROGEN III METHYLASE) (SUMT) (UROGEN III METHYLASE) (UROM) 0 0 0 0 -1.000000 S +Rv0512 hemB delta-aminolevulinic acid dehydratase 0 0 0 0 -1.000000 S +Rv0513 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0514 - POSSIBLE TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0515 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0516c - hypothetical protein Rv0516c 0 0 0 0 -1.000000 S +Rv0517 - POSSIBLE MEMBRANE ACYLTRANSFERASE 0 0 0 0 -1.000000 S +Rv0518 - POSSIBLE EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0519c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0520 - POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0521 - POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0522 gabP PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) 0 0 0 0 -1.000000 S +Rv0523c - hypothetical protein Rv0523c 0 0 0 0 -1.000000 S +Rv0524 hemL glutamate-1-semialdehyde aminotransferase 0 0 0 0 -1.000000 S +Rv0525 - hypothetical protein Rv0525 0 0 0 0 -1.000000 S +Rv0526 - POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) 0 0 0 0 -1.000000 S +Rv0527 ccdA POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA 0 0 0 0 -1.000000 S +Rv0528 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0529 ccsA POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCSA 0 0 0 0 -1.000000 S +Rv0530 - hypothetical protein Rv0530 0 0 0 0 -1.000000 S +Rv0531 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0532 PE_PGRS6 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0533c fabH 3-oxoacyl-(acyl carrier protein) synthase III 0 0 0 0 -1.000000 S +Rv0534c menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase 0 0 0 0 -1.000000 S +Rv0535 pnp 5'-methylthioadenosine phosphorylase 0 0 0 0 -1.000000 S +Rv0536 galE3 PROBABLE UDP-GLUCOSE 4-EPIMERASE GALE3 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 0 0 0 0 -1.000000 S +Rv0537c - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0538 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0539 - PROBABLE DOLICHYL-PHOSPHATE SUGAR SYNTHASE (DOLICHOL-PHOSPHATE SUGAR SYNTHETASE) (DOLICHOL-PHOSPHATE SUGAR TRANSFERASE) (SUGAR PHOSPHORYLDOLICHOL SYNTHASE) 0 0 0 0 -1.000000 S +Rv0540 - hypothetical protein Rv0540 0 0 0 0 -1.000000 S +Rv0541c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0542c menE O-succinylbenzoic acid--CoA ligase 0 0 0 0 -1.000000 S +Rv0543c - hypothetical protein Rv0543c 0 0 0 0 -1.000000 S +Rv0544c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0545c pitA PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER INTEGRAL MEMBRANE PROTEIN PITA 0 0 0 0 -1.000000 S +Rv0546c - hypothetical protein Rv0546c 0 0 0 0 -1.000000 S +Rv0547c - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0548c menB naphthoate synthase 0 0 0 0 -1.000000 S +Rv0549c - hypothetical protein Rv0549c 0 0 0 0 -1.000000 S +Rv0550c - hypothetical protein Rv0550c 0 0 0 0 -1.000000 S +Rv0551c fadD8 acyl-CoA synthetase 0 0 0 0 -1.000000 S +Rv0552 - hypothetical protein Rv0552 0 0 0 0 -1.000000 S +Rv0553 menC O-succinylbenzoate synthase 0 0 0 0 -1.000000 S +Rv0554 bpoC POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) 0 0 0 0 -1.000000 S +Rv0555 menD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 0 0 0 0 -1.000000 S +Rv0556 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0557 pimB MANNOSYLTRANSFERASE PIMB 0 0 0 0 -1.000000 S +Rv0558 ubiE ubiquinone/menaquinone biosynthesis methyltransferase 0 0 0 0 -1.000000 S +Rv0559c - POSSIBLE CONSERVED SECRETED PROTEIN 0 0 0 0 -1.000000 S +Rv0560c - POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) 0 0 0 0 -1.000000 S +Rv0561c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0562 grcC1 PROBABLE POLYPRENYL-DIPHOSPHATE SYNTHASE GRCC1 (POLYPRENYL PYROPHOSPHATE SYNTHETASE) 0 0 0 0 -1.000000 S +Rv0563 htpX heat shock protein HtpX 0 0 0 0 -1.000000 S +Rv0564c gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0 0 0 0 -1.000000 S +Rv0565c - PROBABLE MONOOXYGENASE 0 0 0 0 -1.000000 S +Rv0566c - nucleotide-binding protein 0 0 0 0 -1.000000 S +Rv0567 - PROBABLE METHYLTRANSFERASE/METHYLASE 0 0 0 0 -1.000000 S +Rv0568 cyp135B1 POSSIBLE CYTOCHROME P450 135B1 CYP135B1 0 0 0 0 -1.000000 S +Rv0569 - hypothetical protein Rv0569 0 0 0 0 -1.000000 S +Rv0570 nrdZ PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) 0 0 0 0 -1.000000 S +Rv0571c - hypothetical protein Rv0571c 0 0 0 0 -1.000000 S +Rv0572c - hypothetical protein Rv0572c 0 0 0 0 -1.000000 S +Rv0573c - nicotinate phosphoribosyltransferase 0 0 0 0 -1.000000 S +Rv0574c - hypothetical protein Rv0574c 0 0 0 0 -1.000000 S +Rv0575c - hypothetical protein Rv0575c 0 0 0 0 -1.000000 S +Rv0576 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 0 0 0 0 -1.000000 S +Rv0577 TB27.3 hypothetical protein Rv0577 0 0 0 0 -1.000000 S +Rv0578c PE_PGRS7 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0579 - hypothetical protein Rv0579 0 0 0 0 -1.000000 S +Rv0580c - hypothetical protein Rv0580c 0 0 0 0 -1.000000 S +Rv0581 - hypothetical protein Rv0581 0 0 0 0 -1.000000 S +Rv0582 - hypothetical protein Rv0582 0 0 0 0 -1.000000 S +Rv0583c lpqN PROBABLE CONSERVED LIPOPROTEIN LPQN 0 0 0 0 -1.000000 S +Rv0584 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0585c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0586 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (GNTR-FAMILY) 0 0 0 0 -1.000000 S +Rv0587 yrbE2A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2A 0 0 0 0 -1.000000 S +Rv0588 yrbE2B CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2B 0 0 0 0 -1.000000 S +Rv0589 mce2A MCE-FAMILY PROTEIN MCE2A 0 0 0 0 -1.000000 S +Rv0590 mce2B MCE-FAMILY PROTEIN MCE2B 0 0 0 0 -1.000000 S +Rv0590A - MCE-FAMILY RELATED PROTEIN 0 0 0 0 -1.000000 S +Rv0591 mce2C MCE-FAMILY PROTEIN MCE2C 0 0 0 0 -1.000000 S +Rv0592 mce2D MCE-FAMILY PROTEIN MCE2D 0 0 0 0 -1.000000 S +Rv0593 lprL POSSIBLE MCE-FAMILY LIPOPROTEIN LPRL (MCE-FAMILY LIPOPROTEIN MCE2E) 0 0 0 0 -1.000000 S +Rv0594 mce2F MCE-FAMILY PROTEIN MCE2F 0 0 0 0 -1.000000 S +Rv0595c - hypothetical protein Rv0595c 0 0 0 0 -1.000000 S +Rv0596c - hypothetical protein Rv0596c 0 0 0 0 -1.000000 S +Rv0597c - hypothetical protein Rv0597c 0 0 0 0 -1.000000 S +Rv0598c - hypothetical protein Rv0598c 0 0 0 0 -1.000000 S +Rv0599c - hypothetical protein Rv0599c 0 0 0 0 -1.000000 S +Rv0600c - PROBABLE TWO COMPONENT SENSOR KINASE -SECOND PART 0 0 0 0 -1.000000 S +Rv0601c - PROBABLE TWO COMPONENT SENSOR KINASE -FIRST PART 0 0 0 0 -1.000000 S +Rv0602c tcrA PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA 0 0 0 0 -1.000000 S +Rv0603 - POSSIBLE EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0604 lpqO PROBABLE CONSERVED LIPOPROTEIN LPQO 0 0 0 0 -1.000000 S +Rv0605 - POSSIBLE RESOLVASE 0 0 0 0 -1.000000 S +Rv0606 - POSSIBLE TRANSPOSASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0607 - hypothetical protein Rv0607 0 0 0 0 -1.000000 S +Rv0608 - hypothetical protein Rv0608 0 0 0 0 -1.000000 S +Rv0609 - hypothetical protein Rv0609 0 0 0 0 -1.000000 S +Rv0609A - hypothetical protein Rv0609A 0 0 0 0 -1.000000 S +Rv0610c - hypothetical protein Rv0610c 0 0 0 0 -1.000000 S +Rv0611c - hypothetical protein Rv0611c 0 0 0 0 -1.000000 S +Rv0612 - hypothetical protein Rv0612 0 0 0 0 -1.000000 S +Rv0613c - hypothetical protein Rv0613c 0 0 0 0 -1.000000 S +Rv0614 - hypothetical protein Rv0614 0 0 0 0 -1.000000 S +Rv0615 - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0616c - hypothetical protein Rv0616c 0 0 0 0 -1.000000 S +Rv0617 - hypothetical protein Rv0617 0 0 0 0 -1.000000 S +Rv0618 galTa PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTA 0 0 0 0 -1.000000 S +Rv0619 galTb PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTB 0 0 0 0 -1.000000 S +Rv0620 galK galactokinase 0 0 0 0 -1.000000 S +Rv0621 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0622 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0623 - hypothetical protein Rv0623 0 0 0 0 -1.000000 S +Rv0624 - hypothetical protein Rv0624 0 0 0 0 -1.000000 S +Rv0625c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0626 - hypothetical protein Rv0626 0 0 0 0 -1.000000 S +Rv0627 - hypothetical protein Rv0627 0 0 0 0 -1.000000 S +Rv0628c - hypothetical protein Rv0628c 0 0 0 0 -1.000000 S +Rv0629c recD PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 0 0 0 0 -1.000000 S +Rv0630c recB PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) 0 0 0 0 -1.000000 S +Rv0631c recC PROBABLE EXONUCLEASE V (GAMMA CHAIN) RECC (EXODEOXYRIBONUCLEASE V GAMMA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 0 0 0 0 -1.000000 S +Rv0632c echA3 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0633c - POSSIBLE EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0634A - hypothetical protein Rv0634A 0 0 0 0 -1.000000 S +Rv0634B rpmG 50S ribosomal protein L33 0 0 0 0 -1.000000 S +Rv0634c - POSSIBLE GLYOXALASE II (HYDROXYACYLGLUTATHIONE HYDROLASE) (GLX II) 0 0 0 0 -1.000000 S +Rv0635 - hypothetical protein Rv0635 0 0 0 0 -1.000000 S +Rv0636 - hypothetical protein Rv0636 0 0 0 0 -1.000000 S +Rv0637 - hypothetical protein Rv0637 0 0 0 0 -1.000000 S +Rv0638 secE preprotein translocase subunit SecE 0 0 0 0 -1.000000 S +Rv0639 nusG transcription antitermination protein NusG 0 0 0 0 -1.000000 S +Rv0640 rplK 50S ribosomal protein L11 0 0 0 0 -1.000000 S +Rv0641 rplA 50S ribosomal protein L1 0 0 0 0 -1.000000 S +Rv0642c mmaA4 METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 -1.000000 S +Rv0643c mmaA3 METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 -1.000000 S +Rv0644c mmaA2 METHOXY MYCOLIC ACID SYNTHASE 2 MMAA2 (METHYL MYCOLIC ACID SYNTHASE 2) (MMA2) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 -1.000000 S +Rv0645c mmaA1 METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 -1.000000 S +Rv0646c lipG PROBABLE LIPASE/ESTERASE LIPG 0 0 0 0 -1.000000 S +Rv0647c - hypothetical protein Rv0647c 0 0 0 0 -1.000000 S +Rv0648 - ALPHA-MANNOSIDASE 0 0 0 0 -1.000000 S +Rv0649 fabD2 POSSIBLE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE FABD2 (MCT) 0 0 0 0 -1.000000 S +Rv0650 - POSSIBLE SUGAR KINASE 0 0 0 0 -1.000000 S +Rv0651 rplJ 50S ribosomal protein L10 0 0 0 0 -1.000000 S +Rv0652 rplL 50S ribosomal protein L7/L12 0 0 0 0 -1.000000 S +Rv0653c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0654 - PROBABLE DIOXYGENASE 0 0 0 0 -1.000000 S +Rv0655 mkl POSSIBLE RIBONUCLEOTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER MKL 0 0 0 0 -1.000000 S +Rv0656c - hypothetical protein Rv0656c 0 0 0 0 -1.000000 S +Rv0657c - hypothetical protein Rv0657c 0 0 0 0 -1.000000 S +Rv0658c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0659c - hypothetical protein Rv0659c 0 0 0 0 -1.000000 S +Rv0660c - hypothetical protein Rv0660c 0 0 0 0 -1.000000 S +Rv0661c - hypothetical protein Rv0661c 0 0 0 0 -1.000000 S +Rv0662c - hypothetical protein Rv0662c 0 0 0 0 -1.000000 S +Rv0663 atsD POSSIBLE ARYLSULFATASE ATSD (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 0 0 0 0 -1.000000 S +Rv0664 - hypothetical protein Rv0664 0 0 0 0 -1.000000 S +Rv0665 - hypothetical protein Rv0665 0 0 0 0 -1.000000 S +Rv0666 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0667 rpoB DNA-directed RNA polymerase subunit beta 0 0 0 0 -1.000000 S +Rv0668 rpoC DNA-directed RNA polymerase subunit beta' 0 0 0 0 -1.000000 S +Rv0669c - POSSIBLE HYDROLASE 0 0 0 0 -1.000000 S +Rv0670 end endonuclease IV 0 0 0 0 -1.000000 S +Rv0671 lpqP POSSIBLE CONSERVED LIPOPROTEIN LPQP 0 0 0 0 -1.000000 S +Rv0672 fadE8 PROBABLE ACYL-CoA DEHYDROGENASE FADE8 0 0 0 0 -1.000000 S +Rv0673 echA4 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0674 - hypothetical protein Rv0674 0 0 0 0 -1.000000 S +Rv0675 echA5 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0676c mmpL5 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL5 0 0 0 0 -1.000000 S +Rv0677c mmpS5 POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 0 0 0 0 -1.000000 S +Rv0678 - hypothetical protein Rv0678 0 0 0 0 -1.000000 S +Rv0679c - CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN 0 0 0 0 -1.000000 S +Rv0680c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0681 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 -1.000000 S +Rv0682 rpsL 30S ribosomal protein S12 0 0 0 0 -1.000000 S +Rv0683 rpsG 30S ribosomal protein S7 0 0 0 0 -1.000000 S +Rv0684 fusA1 elongation factor G 0 0 0 0 -1.000000 S +Rv0685 tuf elongation factor Tu 0 0 0 0 -1.000000 S +Rv0686 - PROBABLE MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0687 fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0 0 0 -1.000000 S +Rv0688 - PUTATIVE FERREDOXIN REDUCTASE 0 0 0 0 -1.000000 S +Rv0689c - hypothetical protein Rv0689c 0 0 0 0 -1.000000 S +Rv0690c - hypothetical protein Rv0690c 0 0 0 0 -1.000000 S +Rv0691c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0692 - hypothetical protein Rv0692 0 0 0 0 -1.000000 S +Rv0693 pqqE PROBABLE COENZYME PQQ SYNTHESIS PROTEIN E PQQE (COENZYME PQQ SYNTHESIS PROTEIN III) 0 0 0 0 -1.000000 S +Rv0694 lldD1 POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD1 0 0 0 0 -1.000000 S +Rv0695 - hypothetical protein Rv0695 0 0 0 0 -1.000000 S +Rv0696 - PROBABLE MEMBRANE SUGAR TRANSFERASE 0 0 0 0 -1.000000 S +Rv0697 - PROBABLE DEHYDROGENASE 0 0 0 0 -1.000000 S +Rv0698 - hypothetical protein Rv0698 0 0 0 0 -1.000000 S +Rv0699 - hypothetical protein Rv0699 0 0 0 0 -1.000000 S +Rv0700 rpsJ 30S ribosomal protein S10 0 0 0 0 -1.000000 S +Rv0701 rplC 50S ribosomal protein L3 0 0 0 0 -1.000000 S +Rv0702 rplD 50S ribosomal protein L4 0 0 0 0 -1.000000 S +Rv0703 rplW 50S ribosomal protein L23 0 0 0 0 -1.000000 S +Rv0704 rplB 50S ribosomal protein L2 0 0 0 0 -1.000000 S +Rv0705 rpsS 30S ribosomal protein S19 0 0 0 0 -1.000000 S +Rv0706 rplV 50S ribosomal protein L22 0 0 0 0 -1.000000 S +Rv0707 rpsC 30S ribosomal protein S3 0 0 0 0 -1.000000 S +Rv0708 rplP 50S ribosomal protein L16 0 0 0 0 -1.000000 S +Rv0709 rpmC 50S ribosomal protein L29 0 0 0 0 -1.000000 S +Rv0710 rpsQ 30S ribosomal protein S17 0 0 0 0 -1.000000 S +Rv0711 atsA POSSIBLE ARYLSULFATASE ATSA (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 0 0 0 0 -1.000000 S +Rv0712 - hypothetical protein Rv0712 0 0 0 0 -1.000000 S +Rv0713 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0714 rplN 50S ribosomal protein L14 0 0 0 0 -1.000000 S +Rv0715 rplX 50S ribosomal protein L24 0 0 0 0 -1.000000 S +Rv0716 rplE 50S ribosomal protein L5 0 0 0 0 -1.000000 S +Rv0717 rpsN 30S ribosomal protein S14 0 0 0 0 -1.000000 S +Rv0718 rpsH 30S ribosomal protein S8 0 0 0 0 -1.000000 S +Rv0719 rplF 50S ribosomal protein L6 0 0 0 0 -1.000000 S +Rv0720 rplR 50S ribosomal protein L18 0 0 0 0 -1.000000 S +Rv0721 rpsE 30S ribosomal protein S5 0 0 0 0 -1.000000 S +Rv0722 rpmD 50S ribosomal protein L30 0 0 0 0 -1.000000 S +Rv0723 rplO 50S ribosomal protein L15 0 0 0 0 -1.000000 S +Rv0724 sppA POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) 0 0 0 0 -1.000000 S +Rv0724A - hypothetical protein Rv0724A 0 0 0 0 -1.000000 S +Rv0725c - hypothetical protein Rv0725c 0 0 0 0 -1.000000 S +Rv0726c - hypothetical protein Rv0726c 0 0 0 0 -1.000000 S +Rv0727c fucA L-fuculose-phosphate aldolase 0 0 0 0 -1.000000 S +Rv0728c serA2 POSSIBLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA2 (PHOSPHOGLYCERATE DEHYDROGENASE) (PGDH) 0 0 0 0 -1.000000 S +Rv0729 xylB POSSIBLE D-XYLULOSE KINASE XYLB (XYLULOKINASE) (XYLULOSE KINASE) 0 0 0 0 -1.000000 S +Rv0730 - hypothetical protein Rv0730 0 0 0 0 -1.000000 S +Rv0731c - hypothetical protein Rv0731c 0 0 0 0 -1.000000 S +Rv0732 secY preprotein translocase subunit SecY 0 0 0 0 -1.000000 S +Rv0733 adk adenylate kinase 0 0 0 0 -1.000000 S +Rv0734 mapA methionine aminopeptidase 0 0 0 0 -1.000000 S +Rv0735 sigL RNA polymerase sigma factor SigL 0 0 0 0 -1.000000 S +Rv0736 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0737 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0738 - hypothetical protein Rv0738 0 0 0 0 -1.000000 S +Rv0739 - hypothetical protein Rv0739 0 0 0 0 -1.000000 S +Rv0740 - hypothetical protein Rv0740 0 0 0 0 -1.000000 S +Rv0741 - PROBABLE TRANSPOSASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0742 PE_PGRS8 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0743c - hypothetical protein Rv0743c 0 0 0 0 -1.000000 S +Rv0744c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0745 - hypothetical protein Rv0745 0 0 0 0 -1.000000 S +Rv0746 PE_PGRS9 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0747 PE_PGRS10 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0748 - hypothetical protein Rv0748 0 0 0 0 -1.000000 S +Rv0749 - hypothetical protein Rv0749 0 0 0 0 -1.000000 S +Rv0749A - hypothetical protein Rv0749A 0 0 0 0 -1.000000 S +Rv0750 - hypothetical protein Rv0750 0 0 0 0 -1.000000 S +Rv0751c mmsB PROBABLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE MMSB (HIBADH) 0 0 0 0 -1.000000 S +Rv0752c fadE9 PROBABLE ACYL-CoA DEHYDROGENASE FADE9 0 0 0 0 -1.000000 S +Rv0753c mmsA PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) 0 0 0 0 -1.000000 S +Rv0754 PE_PGRS11 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0755A - PUTATIVE TRANSPOSASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0755c PPE12 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0756c - hypothetical protein Rv0756c 0 0 0 0 -1.000000 S +Rv0757 phoP POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP 0 0 0 0 -1.000000 S +Rv0758 phoR POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE ASSOCIATED PHOR 0 0 0 0 -1.000000 S +Rv0759c - hypothetical protein Rv0759c 0 0 0 0 -1.000000 S +Rv0760c - hypothetical protein Rv0760c 0 0 0 0 -1.000000 S +Rv0761c adhB POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB 0 0 0 0 -1.000000 S +Rv0762c - hypothetical protein Rv0762c 0 0 0 0 -1.000000 S +Rv0763c - POSSIBLE FERREDOXIN 0 0 0 0 -1.000000 S +Rv0764c cyp51 CYTOCHROME P450 51 CYP51 (CYPL1) (P450-L1A1) (STEROL 14-ALPHA DEMETHYLASE) (LANOSTEROL 14-ALPHA DEMETHYLASE) (P450-14DM) 0 0 0 0 -1.000000 S +Rv0765c - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0766c cyp123 PROBABLE CYTOCHROME P450 123 CYP123 0 0 0 0 -1.000000 S +Rv0767c - hypothetical protein Rv0767c 0 0 0 0 -1.000000 S +Rv0768 aldA PROBABLE ALDEHYDE DEHYDROGENASE NAD DEPENDENT ALDA (ALDEHYDE DEHYDROGENASE 0 0 0 0 -1.000000 S +Rv0769 - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0770 - PROBABLE DEHYDROGENASE/REDUCTASE 0 0 0 0 -1.000000 S +Rv0771 - POSSIBLE 4-CARBOXYMUCONOLACTONE DECARBOXYLASE (CMD) 0 0 0 0 -1.000000 S +Rv0772 purD phosphoribosylamine--glycine ligase 0 0 0 0 -1.000000 S +Rv0773c ggtA PROBABLE BIFUNCTIONAL ACYLASE GGTA: CEPHALOSPORIN ACYLASE (GL-7ACA ACYLASE) + GAMMA-GLUTAMYLTRANSPEPTIDASE (GGT) 0 0 0 0 -1.000000 S +Rv0774c - PROBABLE CONSERVED EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0775 - hypothetical protein Rv0775 0 0 0 0 -1.000000 S +Rv0776c - hypothetical protein Rv0776c 0 0 0 0 -1.000000 S +Rv0777 purB adenylosuccinate lyase 0 0 0 0 -1.000000 S +Rv0778 cyp126 POSSIBLE CYTOCHROME P450 126 CYP126 0 0 0 0 -1.000000 S +Rv0779c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0780 hemH phosphoribosylaminoimidazole-succinocarboxamide synthase 0 0 0 0 -1.000000 S +Rv0781 ptrBa PROBABLE PROTEASE II PTRBA 0 0 0 0 -1.000000 S +Rv0782 ptrBb PROBABLE PROTEASE II PTRBB 0 0 0 0 -1.000000 S +Rv0783c emrB POSSIBLE MULTIDRUG RESISTANCE INTEGRAL MEMBRANE EFFLUX PROTEIN EMRB 0 0 0 0 -1.000000 S +Rv0784 - hypothetical protein Rv0784 0 0 0 0 -1.000000 S +Rv0785 - putative FAD-binding dehydrogenase 0 0 0 0 -1.000000 S +Rv0786c - hypothetical protein Rv0786c 0 0 0 0 -1.000000 S +Rv0787 - hypothetical protein Rv0787 0 0 0 0 -1.000000 S +Rv0787A - phosphoribosylformylglycinamidine synthase subunit PurS 0 0 0 0 -1.000000 S +Rv0788 purQ phosphoribosylformylglycinamidine synthase subunit I 0 0 0 0 -1.000000 S +Rv0789c - hypothetical protein Rv0789c 0 0 0 0 -1.000000 S +Rv0790c - hypothetical protein Rv0790c 0 0 0 0 -1.000000 S +Rv0791c - hypothetical protein Rv0791c 0 0 0 0 -1.000000 S +Rv0792c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0 0 0 -1.000000 S +Rv0793 - hypothetical protein Rv0793 0 0 0 0 -1.000000 S +Rv0794c - PROBABLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0795 - PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0796 - PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 0 0 0 0 -1.000000 S +Rv0797 - IS1547 transposase 0 0 0 0 -1.000000 S +Rv0798c cfp29 29 KDa ANTIGEN CFP29 0 0 0 0 -1.000000 S +Rv0799c - hypothetical protein Rv0799c 0 0 0 0 -1.000000 S +Rv0800 pepC putative aminopeptidase 2 0 0 0 0 -1.000000 S +Rv0801 - hypothetical protein Rv0801 0 0 0 0 -1.000000 S +Rv0802c - hypothetical protein Rv0802c 0 0 0 0 -1.000000 S +Rv0803 purL phosphoribosylformylglycinamidine synthase II 0 0 0 0 -1.000000 S +Rv0804 - hypothetical protein Rv0804 0 0 0 0 -1.000000 S +Rv0805 - hypothetical protein Rv0805 0 0 0 0 -1.000000 S +Rv0806c cpsY POSSIBLE UDP-GLUCOSE-4-EPIMERASE CPSY (GALACTOWALDENASE) (UDP-GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE-4-EPIMERASE) 0 0 0 0 -1.000000 S +Rv0807 - hypothetical protein Rv0807 0 0 0 0 -1.000000 S +Rv0808 purF amidophosphoribosyltransferase 0 0 0 0 -1.000000 S +Rv0809 purM phosphoribosylaminoimidazole synthetase 0 0 0 0 -1.000000 S +Rv0810c - hypothetical protein Rv0810c 0 0 0 0 -1.000000 S +Rv0811c - hypothetical protein Rv0811c 0 0 0 0 -1.000000 S +Rv0812 - 4-amino-4-deoxychorismate lyase 0 0 0 0 -1.000000 S +Rv0813c - hypothetical protein Rv0813c 0 0 0 0 -1.000000 S +Rv0814c sseC2 CONSERVED HYPOTHETICAL PROTEIN SSEC2 0 0 0 0 -1.000000 S +Rv0815c cysA2 PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) 0 0 0 0 -1.000000 S +Rv0816c thiX PROBABLE THIOREDOXIN THIX 0 0 0 0 -1.000000 S +Rv0817c - PROBABLE CONSERVED EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0818 - TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0819 - hypothetical protein Rv0819 0 0 0 0 -1.000000 S +Rv0820 phoT PROBABLE PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PHOT 0 0 0 0 -1.000000 S +Rv0821c phoY2 PROBABLE PHOSPHATE-TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PHOY2 0 0 0 0 -1.000000 S +Rv0822c - hypothetical protein Rv0822c 0 0 0 0 -1.000000 S +Rv0823c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0824c desA1 PROBABLE ACYL- 0 0 0 0 -1.000000 S +Rv0825c - hypothetical protein Rv0825c 0 0 0 0 -1.000000 S +Rv0826 - hypothetical protein Rv0826 0 0 0 0 -1.000000 S +Rv0827c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0828c - POSSIBLE DEAMINASE 0 0 0 0 -1.000000 S +Rv0829 - POSSIBLE TRANSPOSASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0830 - hypothetical protein Rv0830 0 0 0 0 -1.000000 S +Rv0831c - hypothetical protein Rv0831c 0 0 0 0 -1.000000 S +Rv0832 PE_PGRS12 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0833 PE_PGRS13 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0834c PE_PGRS14 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0835 lpqQ POSSIBLE LIPOPROTEIN LPQQ 0 0 0 0 -1.000000 S +Rv0836c - hypothetical protein Rv0836c 0 0 0 0 -1.000000 S +Rv0837c - hypothetical protein Rv0837c 0 0 0 0 -1.000000 S +Rv0838 lpqR PROBABLE CONSERVED LIPOPROTEIN LPQR 0 0 0 0 -1.000000 S +Rv0839 - hypothetical protein Rv0839 0 0 0 0 -1.000000 S +Rv0840c pip PROBABLE PROLINE IMINOPEPTIDASE PIP (PROLYL AMINOPEPTIDASE) (PAP) 0 0 0 0 -1.000000 S +Rv0841 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0842 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0843 - PROBABLE DEHYDROGENASE 0 0 0 0 -1.000000 S +Rv0844c narL POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL 0 0 0 0 -1.000000 S +Rv0845 - POSSIBLE TWO COMPONENT SENSOR KINASE 0 0 0 0 -1.000000 S +Rv0846c - PROBABLE OXIDASE 0 0 0 0 -1.000000 S +Rv0847 lpqS PROBABLE LIPOPROTEIN LPQS 0 0 0 0 -1.000000 S +Rv0848 cysK2 POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) 0 0 0 0 -1.000000 S +Rv0849 - PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN 0 0 0 0 -1.000000 S +Rv0850 - PUTATIVE TRANSPOSASE (FRAGMENT) 0 0 0 0 -1.000000 S +Rv0851c - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0852 fadD16 POSSIBLE FATTY-ACID-CoA LIGASE FADD16 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 0 0 0 0 -1.000000 S +Rv0853c pdc PROBABLE PYRUVATE OR INDOLE-3-PYRUVATE DECARBOXYLASE PDC 0 0 0 0 -1.000000 S +Rv0854 - hypothetical protein Rv0854 0 0 0 0 -1.000000 S +Rv0855 far PROBABLE FATTY-ACID-CoA RACEMASE FAR 0 0 0 0 -1.000000 S +Rv0856 - hypothetical protein Rv0856 0 0 0 0 -1.000000 S +Rv0857 - hypothetical protein Rv0857 0 0 0 0 -1.000000 S +Rv0858c - aminotransferase 0 0 0 0 -1.000000 S +Rv0859 fadA acetyl-CoA acetyltransferase 0 0 0 0 -1.000000 S +Rv0860 fadB PROBABLE FATTY OXIDATION PROTEIN FADB 0 0 0 0 -1.000000 S +Rv0861c ercc3 PROBABLE DNA HELICASE ERCC3 0 0 0 0 -1.000000 S +Rv0862c - hypothetical protein Rv0862c 0 0 0 0 -1.000000 S +Rv0863 - hypothetical protein Rv0863 0 0 0 0 -1.000000 S +Rv0864 moaC molybdenum cofactor biosynthesis protein C 0 0 0 0 -1.000000 S +Rv0865 mog PROBABLE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN 0 0 0 0 -1.000000 S +Rv0866 moaE2 PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E2 MOAE2 (MOLYBDOPTERIN CONVERTING FACTOR LARGE SUBUNIT) (MOLYBDOPTERIN 0 0 0 0 -1.000000 S +Rv0867c rpfA POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA 0 0 0 0 -1.000000 S +Rv0868c moaD2 PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D 2 MOAD2 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN 0 0 0 0 -1.000000 S +Rv0869c moaA molybdenum cofactor biosynthesis protein A 0 0 0 0 -1.000000 S +Rv0870c - hypothetical protein Rv0870c 0 0 0 0 -1.000000 S +Rv0871 cspB PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB 0 0 0 0 -1.000000 S +Rv0872c PE_PGRS15 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0873 fadE10 PROBABLE ACYL-CoA DEHYDROGENASE FADE10 0 0 0 0 -1.000000 S +Rv0874c - hypothetical protein Rv0874c 0 0 0 0 -1.000000 S +Rv0875c - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0876c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0877 - hypothetical protein Rv0877 0 0 0 0 -1.000000 S +Rv0878c PPE13 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0879c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0880 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY MARR-FAMILY) 0 0 0 0 -1.000000 S +Rv0881 - POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) 0 0 0 0 -1.000000 S +Rv0882 - PROBABLE TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0883c - hypothetical protein Rv0883c 0 0 0 0 -1.000000 S +Rv0884c serC phosphoserine aminotransferase 0 0 0 0 -1.000000 S +Rv0885 - hypothetical protein Rv0885 0 0 0 0 -1.000000 S +Rv0886 fprB PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) 0 0 0 0 -1.000000 S +Rv0887c - hypothetical protein Rv0887c 0 0 0 0 -1.000000 S +Rv0888 - PROBABLE EXPORTED PROTEIN 0 0 0 0 -1.000000 S +Rv0889c citA citrate synthase 2 0 0 0 0 -1.000000 S +Rv0890c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 0 0 0 0 -1.000000 S +Rv0891c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 -1.000000 S +Rv0892 - PROBABLE MONOOXYGENASE 0 0 0 0 -1.000000 S +Rv0893c - hypothetical protein Rv0893c 0 0 0 0 -1.000000 S +Rv0894 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY LUXR-FAMILY) 0 0 0 0 -1.000000 S +Rv0895 - hypothetical protein Rv0895 0 0 0 0 -1.000000 S +Rv0896 gltA type II citrate synthase 0 0 0 0 -1.000000 S +Rv0897c - PROBABLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0898c - hypothetical protein Rv0898c 0 0 0 0 -1.000000 S +Rv0899 ompA OUTER MEMBRANE PROTEIN A OMPA 0 0 0 0 -1.000000 S +Rv0900 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0901 - POSSIBLE CONSERVED EXPORTED OR MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0902c prrB TWO COMPONENT SENSOR HISTIDINE KINASE PRRB 0 0 0 0 -1.000000 S +Rv0903c prrA TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA 0 0 0 0 -1.000000 S +Rv0904c accD3 PUTATIVE ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE (SUBUNIT BETA) ACCD3 (ACCASE BETA CHAIN) 0 0 0 0 -1.000000 S +Rv0905 echA6 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0906 - hypothetical protein Rv0906 0 0 0 0 -1.000000 S +Rv0907 - hypothetical protein Rv0907 0 0 0 0 -1.000000 S +Rv0908 ctpE PROBABLE METAL CATION TRANSPORTER ATPASE P-TYPE CTPE 0 0 0 0 -1.000000 S +Rv0909 - hypothetical protein Rv0909 0 0 0 0 -1.000000 S +Rv0910 - hypothetical protein Rv0910 0 0 0 0 -1.000000 S +Rv0911 - hypothetical protein Rv0911 0 0 0 0 -1.000000 S +Rv0912 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0913c - POSSIBLE DIOXYGENASE 0 0 0 0 -1.000000 S +Rv0914c - acetyl-CoA acetyltransferase 0 0 0 0 -1.000000 S +Rv0915c PPE14 PPE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0916c PE7 PE FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0917 betP POSSIBLE GLYCINE BETAINE TRANSPORT INTEGRAL MEMBRANE PROTEIN BETP 0 0 0 0 -1.000000 S +Rv0918 - hypothetical protein Rv0918 0 0 0 0 -1.000000 S +Rv0919 - hypothetical protein Rv0919 0 0 0 0 -1.000000 S +Rv0920c - PROBABLE TRANSPOSASE 0 0 0 0 -1.000000 S +Rv0921 - POSSIBLE RESOLVASE 0 0 0 0 -1.000000 S +Rv0922 - POSSIBLE TRANSPOSASE 0 0 0 0 -1.000000 S +Rv0923c - hypothetical protein Rv0923c 0 0 0 0 -1.000000 S +Rv0924c mntH manganese transport protein MntH 0 0 0 0 -1.000000 S +Rv0925c - hypothetical protein Rv0925c 0 0 0 0 -1.000000 S +Rv0926c - hypothetical protein Rv0926c 0 0 0 0 -1.000000 S +Rv0927c - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0928 pstS3 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS3 (PBP-3) (PSTS3) (PHOS1) 0 0 0 0 -1.000000 S +Rv0929 pstC2 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC2 0 0 0 0 -1.000000 S +Rv0930 pstA1 PROBABLE PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA1 0 0 0 0 -1.000000 S +Rv0931c pknD TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) 0 0 0 0 -1.000000 S +Rv0932c pstS2 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS2 (PBP-2) (PSTS2) 0 0 0 0 -1.000000 S +Rv0933 pstB PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PSTB 0 0 0 0 -1.000000 S +Rv0934 pstS1 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) 0 0 0 0 -1.000000 S +Rv0935 pstC1 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC1 0 0 0 0 -1.000000 S +Rv0936 pstA2 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA2 0 0 0 0 -1.000000 S +Rv0937c - hypothetical protein Rv0937c 0 0 0 0 -1.000000 S +Rv0938 - ATP-dependent DNA ligase 0 0 0 0 -1.000000 S +Rv0939 - POSSIBLE BIFUNCTIONAL ENZYME: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD ISOMERASE) + CYCLASE/DEHYDRASE 0 0 0 0 -1.000000 S +Rv0940c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0941c - hypothetical protein Rv0941c 0 0 0 0 -1.000000 S +Rv0942 - hypothetical protein Rv0942 0 0 0 0 -1.000000 S +Rv0943c - PROBABLE MONOOXYGENASE 0 0 0 0 -1.000000 S +Rv0944 - POSSIBLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) 0 0 0 0 -1.000000 S +Rv0945 - short chain dehydrogenase 0 0 0 0 -1.000000 S +Rv0946c pgi glucose-6-phosphate isomerase 0 0 0 0 -1.000000 S +Rv0948c - hypothetical protein Rv0948c 0 0 0 0 -1.000000 S +Rv0949 uvrD1 PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 0 0 0 0 -1.000000 S +Rv0950c - hypothetical protein Rv0950c 0 0 0 0 -1.000000 S +Rv0951 sucC succinyl-CoA synthetase subunit beta 0 0 0 0 -1.000000 S +Rv0952 sucD succinyl-CoA synthetase subunit alpha 0 0 0 0 -1.000000 S +Rv0953c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 -1.000000 S +Rv0954 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0955 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0956 purN phosphoribosylglycinamide formyltransferase 0 0 0 0 -1.000000 S +Rv0957 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 0 0 0 0 -1.000000 S +Rv0958 - POSSIBLE MAGNESIUM CHELATASE 0 0 0 0 -1.000000 S +Rv0959 - hypothetical protein Rv0959 0 0 0 0 -1.000000 S +Rv0960 - hypothetical protein Rv0960 0 0 0 0 -1.000000 S +Rv0961 - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0962c lprP POSSIBLE LIPOPROTEIN LPRP 0 0 0 0 -1.000000 S +Rv0963c - hypothetical protein Rv0963c 0 0 0 0 -1.000000 S +Rv0964c - hypothetical protein Rv0964c 0 0 0 0 -1.000000 S +Rv0965c - hypothetical protein Rv0965c 0 0 0 0 -1.000000 S +Rv0966c - hypothetical protein Rv0966c 0 0 0 0 -1.000000 S +Rv0967 - hypothetical protein Rv0967 0 0 0 0 -1.000000 S +Rv0968 - hypothetical protein Rv0968 0 0 0 0 -1.000000 S +Rv0969 ctpV PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE CTPV 0 0 0 0 -1.000000 S +Rv0970 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 -1.000000 S +Rv0971c echA7 enoyl-CoA hydratase 0 0 0 0 -1.000000 S +Rv0972c fadE12 PROBABLE ACYL-CoA DEHYDROGENASE FADE12 0 0 0 0 -1.000000 S +Rv0973c accA2 PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA2: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) 0 0 0 0 -1.000000 S +Rv0974c accD2 PROBABLE ACETYL-/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD2 0 0 0 0 -1.000000 S +Rv0975c fadE13 PROBABLE ACYL-CoA DEHYDROGENASE FADE13 0 0 0 0 -1.000000 S +Rv0976c - hypothetical protein Rv0976c 0 0 0 0 -1.000000 S +Rv0977 PE_PGRS16 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0978c PE_PGRS17 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0979A rpmF 50S ribosomal protein L32 0 0 0 0 -1.000000 S +Rv0979c - hypothetical protein Rv0979c 0 0 0 0 -1.000000 S +Rv0980c PE_PGRS18 PE-PGRS FAMILY PROTEIN 0 0 0 0 -1.000000 S +Rv0981 mprA MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) 0 0 0 0 -1.000000 S +Rv0982 mprB PROBABLE TWO COMPONENT SENSOR KINASE MPRB 0 0 0 0 -1.000000 S +Rv0983 pepD PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B) 0 0 0 0 -1.000000 S +Rv0984 moaB2 POSSIBLE PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2 (PHS) (4-ALPHA-HYDROXY-TETRAHYDROPTERIN DEHYDRATASE) (PTERIN-4-A-CARBINOLAMINE DEHYDRATASE) (PHENYLALANINE HYDROXYLASE-STIMULATING PROTEIN) (PHS) (PTERIN CARBINOLAMINE DEHYDRATASE) (PCD) 0 0 0 0 -1.000000 S
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hmm-genes1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,1004 @@ +#HMM - Genes +#genes: ES=14, GD=6, NE=80, GA=0, N/A=900 +#key: ES=essential, GD=insertions cause growth-defect, NE=non-essential, GA=insertions confer growth-advantage, N/A=not analyzed (genes with 0 TA sites) +#ORF gene annotation TAs ES sites GD sites NE sites GA sites saturation mean call +Rv0001 dnaA chromosomal replication initiation protein 32 31 0 1 0 0.0312 110.00 ES +Rv0002 dnaN DNA polymerase III subunit beta 31 31 0 0 0 0.0000 0.00 ES +Rv0003 recF recombination protein F 35 5 0 30 0 0.3714 60.85 NE +Rv0004 - hypothetical protein Rv0004 8 6 0 2 0 0.2500 78.00 ES +Rv0005 gyrB DNA gyrase subunit B 43 40 0 3 0 0.0698 174.33 ES +Rv0006 gyrA DNA gyrase subunit A 46 44 0 2 0 0.0435 279.00 ES +Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 11 0 0 11 0 0.3636 86.50 NE +Rv0008c - POSSIBLE MEMBRANE PROTEIN 4 0 0 4 0 0.7500 314.00 NE +Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 7 0 0 7 0 1.0000 175.29 NE +Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 10 0 0 10 0 0.6000 298.83 NE +Rv0011c - putative septation inhibitor protein 3 0 0 3 0 0.0000 0.00 NE +Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 16 0 0 16 0 0.7500 330.08 NE +Rv0013 trpG para-aminobenzoate synthase component II 15 15 0 0 0 0.0667 11.00 ES +Rv0014c pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 25 25 0 0 0 0.0400 11.00 ES +Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 16 0 15 1 0 0.0625 377.00 GD +Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 37 0 33 4 0 0.3514 55.38 GD +Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 27 0 0 27 0 0.4815 104.69 NE +Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 25 12 0 13 0 0.3200 48.62 NE +Rv0019c - hypothetical protein Rv0019c 13 1 0 12 0 0.6154 289.25 NE +Rv0020c TB39.8 hypothetical protein Rv0020c 52 43 0 9 0 0.1346 94.29 ES +Rv0021c - hypothetical protein Rv0021c 23 0 0 23 0 0.8696 359.65 NE +Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 0 0 8 0 1.0000 421.75 NE +Rv0023 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 12 12 0 0 0 0.0000 0.00 ES +Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 13 0 0 13 0 0.8462 265.09 NE +Rv0025 - hypothetical protein Rv0025 8 0 0 8 0 1.0000 79.00 NE +Rv0026 - hypothetical protein Rv0026 15 0 0 15 0 0.7333 228.64 NE +Rv0027 - hypothetical protein Rv0027 5 0 0 5 0 0.4000 105.50 NE +Rv0028 - hypothetical protein Rv0028 5 0 0 5 0 0.4000 136.00 NE +Rv0029 - hypothetical protein Rv0029 19 0 0 19 0 0.7895 196.33 NE +Rv0030 - hypothetical protein Rv0030 5 0 0 5 0 0.2000 124.00 NE +Rv0031 - POSSIBLE REMNANT OF A TRANSPOSASE 1 0 0 1 0 0.0000 0.00 NE +Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 57 12 0 45 0 0.5088 298.86 NE +Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 0 0 3 0 1.0000 186.67 NE +Rv0034 - hypothetical protein Rv0034 5 0 0 5 0 0.8000 236.25 NE +Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 25 0 0 25 0 0.8800 284.59 NE +Rv0036c - hypothetical protein Rv0036c 4 0 0 4 0 1.0000 733.00 NE +Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 21 0 0 21 0 0.6190 272.23 NE +Rv0038 - hypothetical protein Rv0038 8 0 0 8 0 0.7500 420.33 NE +Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 4 0 0 4 0 0.5000 625.50 NE +Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 10 0 0 10 0 0.5000 82.80 NE +Rv0041 leuS leucyl-tRNA synthetase 73 72 0 1 0 0.0137 104.00 ES +Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 5 0 0 5 0 0.6000 100.33 NE +Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 11 0 0 11 0 0.7273 126.50 NE +Rv0044c - POSSIBLE OXIDOREDUCTASE 20 0 0 20 0 0.8500 275.59 NE +Rv0045c - POSSIBLE HYDROLASE 7 0 0 7 0 1.0000 309.71 NE +Rv0046c ino1 MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 17 17 0 0 0 0.0000 0.00 ES +Rv0047c - hypothetical protein Rv0047c 8 0 0 8 0 0.3750 338.00 NE +Rv0048c - POSSIBLE MEMBRANE PROTEIN 16 0 0 16 0 0.9375 423.47 NE +Rv0049 - hypothetical protein Rv0049 9 0 0 9 0 0.6667 145.83 NE +Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 37 0 0 37 0 0.3514 68.23 NE +Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 34 0 0 34 0 0.5588 219.26 NE +Rv0052 - hypothetical protein Rv0052 7 0 0 7 0 0.8571 292.67 NE +Rv0053 rpsF 30S ribosomal protein S6 7 0 7 0 0 0.1429 2.00 GD +Rv0054 ssb single-strand DNA-binding protein 5 0 5 0 0 0.0000 0.00 GD +Rv0055 rpsR 30S ribosomal protein S18 5 0 3 2 0 0.2000 48.00 GD +Rv0056 rplI 50S ribosomal protein L9 8 0 0 8 0 0.7500 74.00 NE +Rv0057 - hypothetical protein Rv0057 16 3 0 13 0 0.4375 156.29 NE +Rv0058 dnaB replicative DNA helicase 39 39 0 0 0 0.0000 0.00 ES +Rv0059 - hypothetical protein Rv0059 21 0 0 21 0 0.8095 323.41 NE +Rv0060 - hypothetical protein Rv0060 23 22 0 1 0 0.0435 302.00 ES +Rv0061 - hypothetical protein Rv0061 6 0 0 6 0 0.5000 249.00 NE +Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 22 0 0 22 0 0.8636 227.68 NE +Rv0063 - POSSIBLE OXIDOREDUCTASE 24 0 0 24 0 0.8333 349.25 NE +Rv0064 - hypothetical protein Rv0064 69 0 0 69 0 0.5507 146.08 NE +Rv0065 - hypothetical protein Rv0065 8 1 0 7 0 0.6250 149.80 NE +Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 38 25 13 0 0 0.0263 11.00 ES +Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 12 0 11 1 0 0.3333 114.50 GD +Rv0068 - short chain dehydrogenase 12 0 0 12 0 0.7500 204.33 NE +Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 12 0 0 12 0 0.5833 500.29 NE +Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 18 0 0 18 0 0.6111 208.00 NE +Rv0071 - POSSIBLE MATURASE 8 0 0 8 0 0.6250 782.60 NE +Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 17 0 0 17 0 0.7647 327.38 NE +Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 16 0 0 16 0 0.9375 388.33 NE +Rv0074 - hypothetical protein Rv0074 20 0 0 20 0 0.6000 177.50 NE +Rv0075 - PROBABLE AMINOTRANSFERASE 25 0 0 25 0 0.8000 265.85 NE +Rv0076c - PROBABLE MEMBRANE PROTEIN 3 0 0 3 0 1.0000 177.00 NE +Rv0077c - PROBABLE OXIDOREDUCTASE 15 0 0 15 0 0.7333 261.64 NE +Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 9 0 0 9 0 0.4444 48.25 NE +Rv0078A - hypothetical protein Rv0078A 10 0 0 10 0 0.9000 204.33 NE +Rv0079 - hypothetical protein Rv0079 14 0 0 14 0 0.7857 478.82 NE +Rv0080 - hypothetical protein Rv0080 5 0 0 5 0 0.6000 606.00 NE +Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 6 0 0 6 0 0.8333 447.20 NE +Rv0082 - PROBABLE OXIDOREDUCTASE 7 0 0 7 0 0.5714 316.25 NE +Rv0083 - PROBABLE OXIDOREDUCTASE 23 0 0 23 0 0.7391 274.06 NE +Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 9 0 0 9 0 0.8889 206.50 NE +Rv0085 hycP POSSIBLE HYDROGENASE HYCP 4 0 0 4 0 0.5000 147.50 NE +Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 15 0 0 15 0 0.6000 56.00 NE +Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 26 0 0 26 0 0.2692 128.29 NE +Rv0088 - hypothetical protein Rv0088 14 0 0 14 0 0.2857 118.50 NE +Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 11 0 0 11 0 0.8182 132.44 NE +Rv0090 - POSSIBLE MEMBRANE PROTEIN 12 0 0 12 0 0.6667 212.00 NE +Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 11 0 0 11 0 0.7273 512.25 NE +Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 30 0 0 30 0 0.7333 234.45 NE +Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 9 0 0 9 0 0.5556 125.80 NE +Rv0094c - hypothetical protein Rv0094c 14 0 0 14 0 1.0000 120.71 NE +Rv0095c - hypothetical protein Rv0095c 10 0 0 10 0 0.4000 194.00 NE +Rv0096 PPE1 PPE FAMILY PROTEIN 34 0 0 34 0 0.6471 286.18 NE +Rv0097 - POSSIBLE OXIDOREDUCTASE 26 0 0 26 0 0.5769 281.07 NE +Rv0098 - hypothetical protein Rv0098 12 0 0 12 0 0.5833 63.43 NE +Rv0099 fadD10 acyl-CoA synthetase 26 0 0 26 0 0.2308 143.83 NE +Rv0100 - hypothetical protein Rv0100 0 0 0 0 0 0.0000 0.00 N/A +Rv0101 nrp PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0102 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0103c ctpB PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB 0 0 0 0 0 0.0000 0.00 N/A +Rv0104 - hypothetical protein Rv0104 0 0 0 0 0 0.0000 0.00 N/A +Rv0105c rpmB 50S ribosomal protein L28 0 0 0 0 0 0.0000 0.00 N/A +Rv0106 - hypothetical protein Rv0106 0 0 0 0 0 0.0000 0.00 N/A +Rv0107c ctpI PROBABLE CATION-TRANSPORTER ATPASE I CTPI 0 0 0 0 0 0.0000 0.00 N/A +Rv0108c - hypothetical protein Rv0108c 0 0 0 0 0 0.0000 0.00 N/A +Rv0109 PE_PGRS1 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0110 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0111 - POSSIBLE TRANSMEMBRANE ACYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0112 gca POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0113 gmhA PROBABLE SEDOHEPTULOSE-7-PHOSPHATE ISOMERASE GMHA (PHOSPHOHEPTOSE ISOMERASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0114 gmhB POSSIBLE D-ALPHA,BETA-D-HEPTOSE-1,7-BIPHOSPHATE PHOSPHATASE GMHB (D-GLYCERO-D-MANNO-HEPTOSE 7-PHOSPHATE KINASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0115 hddA POSSIBLE D-ALPHA-D-HEPTOSE-7-PHOSPHATE KINASE HDDA 0 0 0 0 0 0.0000 0.00 N/A +Rv0116c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0117 oxyS OXIDATIVE STRESS RESPONSE REGULATORY PROTEIN OXYS 0 0 0 0 0 0.0000 0.00 N/A +Rv0118c oxcA putative oxalyl-CoA decarboxylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0119 fadD7 acyl-CoA synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0120c fusA2 elongation factor G 0 0 0 0 0 0.0000 0.00 N/A +Rv0121c - hypothetical protein Rv0121c 0 0 0 0 0 0.0000 0.00 N/A +Rv0122 - hypothetical protein Rv0122 0 0 0 0 0 0.0000 0.00 N/A +Rv0123 - hypothetical protein Rv0123 0 0 0 0 0 0.0000 0.00 N/A +Rv0124 PE_PGRS2 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0125 pepA PROBABLE SERINE PROTEASE PEPA (SERINE PROTEINASE) (MTB32A) 0 0 0 0 0 0.0000 0.00 N/A +Rv0126 treS TREHALOSE SYNTHASE TRES 0 0 0 0 0 0.0000 0.00 N/A +Rv0127 - hypothetical protein Rv0127 0 0 0 0 0 0.0000 0.00 N/A +Rv0128 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0129c fbpC SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) 0 0 0 0 0 0.0000 0.00 N/A +Rv0130 - hypothetical protein Rv0130 0 0 0 0 0 0.0000 0.00 N/A +Rv0131c fadE1 PROBABLE ACYL-CoA DEHYDROGENASE FADE1 0 0 0 0 0 0.0000 0.00 N/A +Rv0132c fgd2 PUTATIVE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD2 0 0 0 0 0 0.0000 0.00 N/A +Rv0133 - PROBABLE ACETYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0134 ephF POSSIBLE EPOXIDE HYDROLASE EPHF (EPOXIDE HYDRATASE) (ARENE-OXIDE HYDRATASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0135c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0136 cyp138 PROBABLE CYTOCHROME P450 138 CYP138 0 0 0 0 0 0.0000 0.00 N/A +Rv0137c msrA methionine sulfoxide reductase A 0 0 0 0 0 0.0000 0.00 N/A +Rv0138 - hypothetical protein Rv0138 0 0 0 0 0 0.0000 0.00 N/A +Rv0139 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0140 - hypothetical protein Rv0140 0 0 0 0 0 0.0000 0.00 N/A +Rv0141c - hypothetical protein Rv0141c 0 0 0 0 0 0.0000 0.00 N/A +Rv0142 - hypothetical protein Rv0142 0 0 0 0 0 0.0000 0.00 N/A +Rv0143c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0144 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0145 - hypothetical protein Rv0145 0 0 0 0 0 0.0000 0.00 N/A +Rv0146 - hypothetical protein Rv0146 0 0 0 0 0 0.0000 0.00 N/A +Rv0147 - PROBABLE ALDEHYDE DEHYDROGENASE (NAD+) DEPENDENT 0 0 0 0 0 0.0000 0.00 N/A +Rv0148 - PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0149 - POSSIBLE QUINONE OXIDOREDUCTASE (NADPH:QUINONE OXIDOREDUCTASE) (ZETA-CRYSTALLIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0150c - hypothetical protein Rv0150c 0 0 0 0 0 0.0000 0.00 N/A +Rv0151c PE1 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0152c PE2 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0153c ptbB PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPB (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) 0 0 0 0 0 0.0000 0.00 N/A +Rv0154c fadE2 PROBABLE ACYL-CoA DEHYDROGENASE FADE2 0 0 0 0 0 0.0000 0.00 N/A +Rv0155 pntAa PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAA 0 0 0 0 0 0.0000 0.00 N/A +Rv0156 pntAb PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB 0 0 0 0 0 0.0000 0.00 N/A +Rv0157 pntB PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT BETA) PNTB 0 0 0 0 0 0.0000 0.00 N/A +Rv0158 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0159c PE3 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0160c PE4 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0161 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0162c adhE1 PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE (E SUBUNIT) ADHE 0 0 0 0 0 0.0000 0.00 N/A +Rv0163 - hypothetical protein Rv0163 0 0 0 0 0 0.0000 0.00 N/A +Rv0164 TB18.5 hypothetical protein Rv0164 0 0 0 0 0 0.0000 0.00 N/A +Rv0165c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0166 fadD5 acyl-CoA synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0167 yrbE1A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A 0 0 0 0 0 0.0000 0.00 N/A +Rv0168 yrbE1B CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1B 0 0 0 0 0 0.0000 0.00 N/A +Rv0169 mce1A MCE-FAMILY PROTEIN MCE1A 0 0 0 0 0 0.0000 0.00 N/A +Rv0170 mce1B MCE-FAMILY PROTEIN MCE1B 0 0 0 0 0 0.0000 0.00 N/A +Rv0171 mce1C MCE-FAMILY PROTEIN MCE1C 0 0 0 0 0 0.0000 0.00 N/A +Rv0172 mce1D MCE-FAMILY PROTEIN MCE1D 0 0 0 0 0 0.0000 0.00 N/A +Rv0173 lprK POSSIBLE MCE-FAMILY LIPOPROTEIN LPRK (MCE-FAMILY LIPOPROTEIN MCE1E) 0 0 0 0 0 0.0000 0.00 N/A +Rv0174 mce1F MCE-FAMILY PROTEIN MCE1F 0 0 0 0 0 0.0000 0.00 N/A +Rv0175 - PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0176 - PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0177 - PROBABLE CONSERVED MCE ASSOCIATED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0178 - PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0179c lprO POSSIBLE LIPOPROTEIN LPRO 0 0 0 0 0 0.0000 0.00 N/A +Rv0180c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0181c - hypothetical protein Rv0181c 0 0 0 0 0 0.0000 0.00 N/A +Rv0182c sigG RNA polymerase factor sigma-70 0 0 0 0 0 0.0000 0.00 N/A +Rv0183 - POSSIBLE LYSOPHOSPHOLIPASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0184 - hypothetical protein Rv0184 0 0 0 0 0 0.0000 0.00 N/A +Rv0185 - hypothetical protein Rv0185 0 0 0 0 0 0.0000 0.00 N/A +Rv0186 bglS PROBABLE BETA-GLUCOSIDASE BGLS (GENTIOBIASE) (CELLOBIASE) (BETA-D-GLUCOSIDE GLUCOHYDROLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0187 - PROBABLE O-METHYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0188 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0189c ilvD dihydroxy-acid dehydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0190 - hypothetical protein Rv0190 0 0 0 0 0 0.0000 0.00 N/A +Rv0191 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0192 - hypothetical protein Rv0192 0 0 0 0 0 0.0000 0.00 N/A +Rv0192A - CONSERVED SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0193c - hypothetical protein Rv0193c 0 0 0 0 0 0.0000 0.00 N/A +Rv0194 - PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER 0 0 0 0 0 0.0000 0.00 N/A +Rv0195 - POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0196 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0197 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0198c - PROBABLE ZINC METALLOPROTEASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0199 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0200 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0201c - hypothetical protein Rv0201c 0 0 0 0 0 0.0000 0.00 N/A +Rv0202c mmpL11 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL11 0 0 0 0 0 0.0000 0.00 N/A +Rv0203 - POSSIBLE EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0204c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0205 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0206c mmpL3 POSSIBLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL3 0 0 0 0 0 0.0000 0.00 N/A +Rv0207c - hypothetical protein Rv0207c 0 0 0 0 0 0.0000 0.00 N/A +Rv0208c trmB tRNA (guanine-N(7))-methyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0209 - hypothetical protein Rv0209 0 0 0 0 0 0.0000 0.00 N/A +Rv0210 - hypothetical protein Rv0210 0 0 0 0 0 0.0000 0.00 N/A +Rv0211 pckA phosphoenolpyruvate carboxykinase 0 0 0 0 0 0.0000 0.00 N/A +Rv0212c nadR POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0213c - POSSIBLE METHYLTRANSFERASE (METHYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0214 fadD4 acyl-CoA synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0215c fadE3 PROBABLE ACYL-CoA DEHYDROGENASE FADE3 0 0 0 0 0 0.0000 0.00 N/A +Rv0216 - hypothetical protein Rv0216 0 0 0 0 0 0.0000 0.00 N/A +Rv0217c lipW POSSIBLE ESTERASE LIPW 0 0 0 0 0 0.0000 0.00 N/A +Rv0218 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0219 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0220 lipC PROBABLE ESTERASE LIPC 0 0 0 0 0 0.0000 0.00 N/A +Rv0221 - hypothetical protein Rv0221 0 0 0 0 0 0.0000 0.00 N/A +Rv0222 echA1 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0223c - PROBABLE ALDEHYDE DEHYDROGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0224c - POSSIBLE METHYLTRANSFERASE (METHYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0225 - POSSIBLE CONSERVED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0226c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0227c - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0228 - PROBABLE INTEGRAL MEMBRANE ACYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0229c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0230c php PROBABLE PHOSPHOTRIESTERASE PHP (PARATHION HYDROLASE) (PTE) (ARYLDIALKYLPHOSPHATASE) (PARAOXONASE) (A-ESTERASE) (ARYLTRIPHOSPHATASE) (PARAOXON HYDROLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0231 fadE4 PROBABLE ACYL-CoA DEHYDROGENASE FADE4 0 0 0 0 0 0.0000 0.00 N/A +Rv0232 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0233 nrdB ribonucleotide-diphosphate reductase subunit beta 0 0 0 0 0 0.0000 0.00 N/A +Rv0234c gabD1 succinic semialdehyde dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0235c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0236c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0236A - SMALL SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0237 lpqI PROBABLE CONSERVED LIPOPROTEIN LPQI 0 0 0 0 0 0.0000 0.00 N/A +Rv0238 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0239 - hypothetical protein Rv0239 0 0 0 0 0 0.0000 0.00 N/A +Rv0240 - hypothetical protein Rv0240 0 0 0 0 0 0.0000 0.00 N/A +Rv0241c - hypothetical protein Rv0241c 0 0 0 0 0 0.0000 0.00 N/A +Rv0242c fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0 0 0 0 0.0000 0.00 N/A +Rv0243 fadA2 acetyl-CoA acetyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0244c fadE5 PROBABLE ACYL-CoA DEHYDROGENASE FADE5 0 0 0 0 0 0.0000 0.00 N/A +Rv0245 - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0246 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0247c - fumarate reductase iron-sulfur subunit 0 0 0 0 0 0.0000 0.00 N/A +Rv0248c sdhA succinate dehydrogenase flavoprotein subunit 0 0 0 0 0 0.0000 0.00 N/A +Rv0249c - PROBABLE SUCCINATE DEHYDROGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0250c - hypothetical protein Rv0250c 0 0 0 0 0 0.0000 0.00 N/A +Rv0251c hsp HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) 0 0 0 0 0 0.0000 0.00 N/A +Rv0252 nirB PROBABLE NITRITE REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0253 nirD PROBABLE NITRITE REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0254c cobU PROBABLE BIFUNCTIONAL COBALAMIN BIOSYNTHESIS PROTEIN COBU: COBINAMIDE KINASE + COBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0255c cobQ1 cobyric acid synthase 0 0 0 0 0 0.0000 0.00 N/A +Rv0256c PPE2 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0257 - hypothetical protein Rv0257 0 0 0 0 0 0.0000 0.00 N/A +Rv0258c - hypothetical protein Rv0258c 0 0 0 0 0 0.0000 0.00 N/A +Rv0259c - hypothetical protein Rv0259c 0 0 0 0 0 0.0000 0.00 N/A +Rv0260c - bifunctional uroporphyrinogen-III synthetase/response regulator domain protein 0 0 0 0 0 0.0000 0.00 N/A +Rv0261c narK3 PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARK3 (NITRITE FACILITATOR) 0 0 0 0 0 0.0000 0.00 N/A +Rv0262c aac AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) 0 0 0 0 0 0.0000 0.00 N/A +Rv0263c - hypothetical protein Rv0263c 0 0 0 0 0 0.0000 0.00 N/A +Rv0264c - hypothetical protein Rv0264c 0 0 0 0 0 0.0000 0.00 N/A +Rv0265c - PROBABLE PERIPLASMIC IRON-TRANSPORT LIPOPROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0266c oplA PROBABLE 5-OXOPROLINASE OPLA (5-OXO-L-PROLINASE) (PYROGLUTAMASE) (5-OPASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0267 narU PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARU (NITRITE FACILITATOR) 0 0 0 0 0 0.0000 0.00 N/A +Rv0268c - hypothetical protein Rv0268c 0 0 0 0 0 0.0000 0.00 N/A +Rv0269c - hypothetical protein Rv0269c 0 0 0 0 0 0.0000 0.00 N/A +Rv0270 fadD2 acyl-CoA synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0271c fadE6 PROBABLE ACYL-CoA DEHYDROGENASE FADE6 0 0 0 0 0 0.0000 0.00 N/A +Rv0272c - hypothetical protein Rv0272c 0 0 0 0 0 0.0000 0.00 N/A +Rv0273c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0274 - hypothetical protein Rv0274 0 0 0 0 0 0.0000 0.00 N/A +Rv0275c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0276 - hypothetical protein Rv0276 0 0 0 0 0 0.0000 0.00 N/A +Rv0277c - hypothetical protein Rv0277c 0 0 0 0 0 0.0000 0.00 N/A +Rv0278c PE_PGRS3 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0279c PE_PGRS4 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0280 PPE3 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0281 - hypothetical protein Rv0281 0 0 0 0 0 0.0000 0.00 N/A +Rv0282 - hypothetical protein Rv0282 0 0 0 0 0 0.0000 0.00 N/A +Rv0283 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0284 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0285 PE5 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0286 PPE4 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0287 esxG ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) 0 0 0 0 0 0.0000 0.00 N/A +Rv0288 esxH LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) 0 0 0 0 0 0.0000 0.00 N/A +Rv0289 - hypothetical protein Rv0289 0 0 0 0 0 0.0000 0.00 N/A +Rv0290 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0291 mycP3 PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) 0 0 0 0 0 0.0000 0.00 N/A +Rv0292 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0293c - hypothetical protein Rv0293c 0 0 0 0 0 0.0000 0.00 N/A +Rv0294 tam PROBABLE TRANS-ACONITATE METHYLTRANSFERASE TAM 0 0 0 0 0 0.0000 0.00 N/A +Rv0295c - hypothetical protein Rv0295c 0 0 0 0 0 0.0000 0.00 N/A +Rv0296c - PROBABLE SULFATASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0297 PE_PGRS5 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0298 - hypothetical protein Rv0298 0 0 0 0 0 0.0000 0.00 N/A +Rv0299 - hypothetical protein Rv0299 0 0 0 0 0 0.0000 0.00 N/A +Rv0300 - hypothetical protein Rv0300 0 0 0 0 0 0.0000 0.00 N/A +Rv0301 - hypothetical protein Rv0301 0 0 0 0 0 0.0000 0.00 N/A +Rv0302 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0303 - PROBABLE DEHYDROGENASE/REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0304c PPE5 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0305c PPE6 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0306 - PUTATIVE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0307c - hypothetical protein Rv0307c 0 0 0 0 0 0.0000 0.00 N/A +Rv0308 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0309 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0310c - hypothetical protein Rv0310c 0 0 0 0 0 0.0000 0.00 N/A +Rv0311 - hypothetical protein Rv0311 0 0 0 0 0 0.0000 0.00 N/A +Rv0312 - CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0313 - hypothetical protein Rv0313 0 0 0 0 0 0.0000 0.00 N/A +Rv0314c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0315 - POSSIBLE BETA-1,3-GLUCANASE PRECURSOR 0 0 0 0 0 0.0000 0.00 N/A +Rv0316 - POSSIBLE MUCONOLACTONE ISOMERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0317c glpQ2 POSSIBLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ2 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0318c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0319 pcp pyrrolidone-carboxylate peptidase 0 0 0 0 0 0.0000 0.00 N/A +Rv0320 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0321 dcd deoxycytidine triphosphate deaminase 0 0 0 0 0 0.0000 0.00 N/A +Rv0322 udgA PROBABLE UDP-GLUCOSE 6-DEHYDROGENASE UDGA (UDP-GLC DEHYDROGENASE) (UDP-GLCDH) (UDPGDH) 0 0 0 0 0 0.0000 0.00 N/A +Rv0323c - hypothetical protein Rv0323c 0 0 0 0 0 0.0000 0.00 N/A +Rv0324 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0325 - hypothetical protein Rv0325 0 0 0 0 0 0.0000 0.00 N/A +Rv0326 - hypothetical protein Rv0326 0 0 0 0 0 0.0000 0.00 N/A +Rv0327c cyp135A1 POSSIBLE CYTOCHROME P450 135A1 CYP135A1 0 0 0 0 0 0.0000 0.00 N/A +Rv0328 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR/ACRR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0329c - hypothetical protein Rv0329c 0 0 0 0 0 0.0000 0.00 N/A +Rv0330c - hypothetical protein Rv0330c 0 0 0 0 0 0.0000 0.00 N/A +Rv0331 - POSSIBLE DEHYDROGENASE/REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0332 - hypothetical protein Rv0332 0 0 0 0 0 0.0000 0.00 N/A +Rv0333 - hypothetical protein Rv0333 0 0 0 0 0 0.0000 0.00 N/A +Rv0334 rmlA ALPHA-D-GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE RMLA (DTDP-GLUCOSE SYNTHASE) (DTDP-GLUCOSE PYROPHOSPHORYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0335c PE6 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0336 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0337c aspC aminotransferase AlaT 0 0 0 0 0 0.0000 0.00 N/A +Rv0338c - PROBABLE IRON-SULFUR-BINDING REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0339c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0340 - hypothetical protein Rv0340 0 0 0 0 0 0.0000 0.00 N/A +Rv0341 iniB ISONIAZID INDUCTIBLE GENE PROTEIN INIB 0 0 0 0 0 0.0000 0.00 N/A +Rv0342 iniA ISONIAZID INDUCTIBLE GENE PROTEIN INIA 0 0 0 0 0 0.0000 0.00 N/A +Rv0343 iniC ISONIAZID INDUCTIBLE GENE PROTEIN INIC 0 0 0 0 0 0.0000 0.00 N/A +Rv0344c lpqJ PROBABLE LIPOPROTEIN LPQJ 0 0 0 0 0 0.0000 0.00 N/A +Rv0345 - hypothetical protein Rv0345 0 0 0 0 0 0.0000 0.00 N/A +Rv0346c ansP2 POSSIBLE L-ASPARAGINE PERMEASE ANSP2 (L-ASPARAGINE TRANSPORT PROTEIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0347 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0348 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0349 - hypothetical protein Rv0349 0 0 0 0 0 0.0000 0.00 N/A +Rv0350 dnaK molecular chaperone DnaK 0 0 0 0 0 0.0000 0.00 N/A +Rv0351 grpE PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) 0 0 0 0 0 0.0000 0.00 N/A +Rv0352 dnaJ1 PROBABLE CHAPERONE PROTEIN DNAJ1 0 0 0 0 0 0.0000 0.00 N/A +Rv0353 hspR PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0354c PPE7 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0355c PPE8 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0356c - hypothetical protein Rv0356c 0 0 0 0 0 0.0000 0.00 N/A +Rv0357c purA adenylosuccinate synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0358 - hypothetical protein Rv0358 0 0 0 0 0 0.0000 0.00 N/A +Rv0359 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0360c - hypothetical protein Rv0360c 0 0 0 0 0 0.0000 0.00 N/A +Rv0361 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0362 mgtE POSSIBLE Mg2+ TRANSPORT TRANSMEMBRANE PROTEIN MGTE 0 0 0 0 0 0.0000 0.00 N/A +Rv0363c fba fructose-bisphosphate aldolase 0 0 0 0 0 0.0000 0.00 N/A +Rv0364 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0365c - hypothetical protein Rv0365c 0 0 0 0 0 0.0000 0.00 N/A +Rv0366c - hypothetical protein Rv0366c 0 0 0 0 0 0.0000 0.00 N/A +Rv0367c - hypothetical protein Rv0367c 0 0 0 0 0 0.0000 0.00 N/A +Rv0368c - hypothetical protein Rv0368c 0 0 0 0 0 0.0000 0.00 N/A +Rv0369c - POSSIBLE MEMBRANE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0370c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0371c - hypothetical protein Rv0371c 0 0 0 0 0 0.0000 0.00 N/A +Rv0372c - hypothetical protein Rv0372c 0 0 0 0 0 0.0000 0.00 N/A +Rv0373c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (LARGE CHAIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0374c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (SMALL CHAIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0375c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (MEDIUM CHAIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0376c - hypothetical protein Rv0376c 0 0 0 0 0 0.0000 0.00 N/A +Rv0377 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LYSR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0378 - CONSERVED HYPOTHETICAL GLYCINE RICH PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0379 secE2 POSSIBLE PROTEIN TRANSPORT PROTEIN SECE2 0 0 0 0 0 0.0000 0.00 N/A +Rv0380c - POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0381c - hypothetical protein Rv0381c 0 0 0 0 0 0.0000 0.00 N/A +Rv0382c pyrE orotate phosphoribosyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0383c - POSSIBLE CONSERVED SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0384c clpB PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) 0 0 0 0 0 0.0000 0.00 N/A +Rv0385 - hypothetical protein Rv0385 0 0 0 0 0 0.0000 0.00 N/A +Rv0386 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0387c - hypothetical protein Rv0387c 0 0 0 0 0 0.0000 0.00 N/A +Rv0388c PPE9 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0389 purT phosphoribosylglycinamide formyltransferase 2 0 0 0 0 0 0.0000 0.00 N/A +Rv0390 - hypothetical protein Rv0390 0 0 0 0 0 0.0000 0.00 N/A +Rv0391 metZ O-succinylhomoserine sulfhydrylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0392c ndhA PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA 0 0 0 0 0 0.0000 0.00 N/A +Rv0393 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0394c - POSSIBLE SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0395 - hypothetical protein Rv0395 0 0 0 0 0 0.0000 0.00 N/A +Rv0396 - hypothetical protein Rv0396 0 0 0 0 0 0.0000 0.00 N/A +Rv0397 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0398c - POSSIBLE SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0399c lpqK POSSIBLE CONSERVED LIPOPROTEIN LPQK 0 0 0 0 0 0.0000 0.00 N/A +Rv0400c fadE7 ACYL-CoA DEHYDROGENASE FADE7 0 0 0 0 0 0.0000 0.00 N/A +Rv0401 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0402c mmpL1 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL1 0 0 0 0 0 0.0000 0.00 N/A +Rv0403c mmpS1 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS1 0 0 0 0 0 0.0000 0.00 N/A +Rv0404 fadD30 acyl-CoA synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0405 pks6 PROBABLE MEMBRANE BOUND POLYKETIDE SYNTHASE PKS6 0 0 0 0 0 0.0000 0.00 N/A +Rv0406c - BETA LACTAMASE LIKE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0407 fgd1 PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1 0 0 0 0 0 0.0000 0.00 N/A +Rv0408 pta phosphate acetyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0409 ackA acetate kinase 0 0 0 0 0 0.0000 0.00 N/A +Rv0410c pknG SERINE/THREONINE-PROTEIN KINASE PKNG (PROTEIN KINASE G) (STPK G) 0 0 0 0 0 0.0000 0.00 N/A +Rv0411c glnH PROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP) 0 0 0 0 0 0.0000 0.00 N/A +Rv0412c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0413 mutT3 POSSIBLE MUTATOR PROTEIN MUTT3 (7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE) (8-OXO-DGTPASE) (DGTP PYROPHOSPHOHYDROLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0414c thiE thiamine-phosphate pyrophosphorylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0415 thiO POSSIBLE THIAMINE BIOSYNTHESIS OXIDOREDUCTASE THIO 0 0 0 0 0 0.0000 0.00 N/A +Rv0416 thiS sulfur carrier protein ThiS 0 0 0 0 0 0.0000 0.00 N/A +Rv0417 thiG thiazole synthase 0 0 0 0 0 0.0000 0.00 N/A +Rv0418 lpqL PROBABLE LIPOPROTEIN AMINOPEPTIDASE LPQL 0 0 0 0 0 0.0000 0.00 N/A +Rv0419 lpqM POSSIBLE LIPOPROTEIN PEPTIDASE LPQM 0 0 0 0 0 0.0000 0.00 N/A +Rv0420c - POSSIBLE TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0421c - hypothetical protein Rv0421c 0 0 0 0 0 0.0000 0.00 N/A +Rv0422c thiD phosphomethylpyrimidine kinase 0 0 0 0 0 0.0000 0.00 N/A +Rv0423c thiC thiamine biosynthesis protein ThiC 0 0 0 0 0 0.0000 0.00 N/A +Rv0424c - hypothetical protein Rv0424c 0 0 0 0 0 0.0000 0.00 N/A +Rv0425c ctpH POSSIBLE METAL CATION TRANSPORTING P-TYPE ATPASE CTPH 0 0 0 0 0 0.0000 0.00 N/A +Rv0426c - POSSIBLE TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0427c xthA PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III) (EXO III) (AP ENDONUCLEASE VI) 0 0 0 0 0 0.0000 0.00 N/A +Rv0428c - hypothetical protein Rv0428c 0 0 0 0 0 0.0000 0.00 N/A +Rv0429c def peptide deformylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0430 - hypothetical protein Rv0430 0 0 0 0 0 0.0000 0.00 N/A +Rv0431 - PUTATIVE TUBERCULIN RELATED PEPTIDE 0 0 0 0 0 0.0000 0.00 N/A +Rv0432 sodC PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0433 - hypothetical protein Rv0433 0 0 0 0 0 0.0000 0.00 N/A +Rv0434 - hypothetical protein Rv0434 0 0 0 0 0 0.0000 0.00 N/A +Rv0435c - PUTATIVE CONSERVED ATPASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0436c pssA PROBABLE CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE PSSA (PS SYNTHASE) (PHOSPHATIDYLSERINE SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0437c psd phosphatidylserine decarboxylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0438c moeA2 PROBABLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA2 0 0 0 0 0 0.0000 0.00 N/A +Rv0439c - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0440 groEL chaperonin GroEL 0 0 0 0 0 0.0000 0.00 N/A +Rv0441c - hypothetical protein Rv0441c 0 0 0 0 0 0.0000 0.00 N/A +Rv0442c PPE10 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0443 - hypothetical protein Rv0443 0 0 0 0 0 0.0000 0.00 N/A +Rv0444c - hypothetical protein Rv0444c 0 0 0 0 0 0.0000 0.00 N/A +Rv0445c sigK RNA polymerase sigma factor SigK 0 0 0 0 0 0.0000 0.00 N/A +Rv0446c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0447c ufaA1 PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0448c - hypothetical protein Rv0448c 0 0 0 0 0 0.0000 0.00 N/A +Rv0449c - hypothetical protein Rv0449c 0 0 0 0 0 0.0000 0.00 N/A +Rv0450c mmpL4 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 0 0 0 0 0 0.0000 0.00 N/A +Rv0451c mmpS4 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 0 0 0 0 0 0.0000 0.00 N/A +Rv0452 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0453 PPE11 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0454 - hypothetical protein Rv0454 0 0 0 0 0 0.0000 0.00 N/A +Rv0455c - hypothetical protein Rv0455c 0 0 0 0 0 0.0000 0.00 N/A +Rv0456c echA2 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0456A - hypothetical protein Rv0456A 0 0 0 0 0 0.0000 0.00 N/A +Rv0457c - PROBABLE PEPTIDASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0458 - PROBABLE ALDEHYDE DEHYDROGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0459 - hypothetical protein Rv0459 0 0 0 0 0 0.0000 0.00 N/A +Rv0460 - CONSERVED HYDROPHOBIC PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0461 - PROBABLE TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0462 lpd dihydrolipoamide dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0463 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0464c - hypothetical protein Rv0464c 0 0 0 0 0 0.0000 0.00 N/A +Rv0465c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0466 - hypothetical protein Rv0466 0 0 0 0 0 0.0000 0.00 N/A +Rv0467 icl isocitrate lyase 0 0 0 0 0 0.0000 0.00 N/A +Rv0468 fadB2 3-hydroxybutyryl-CoA dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0469 umaA POSSIBLE MYCOLIC ACID SYNTHASE UMAA 0 0 0 0 0 0.0000 0.00 N/A +Rv0470c pcaA MYCOLIC ACID SYNTHASE PCAA (CYCLOPROPANE SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0470A - hypothetical protein Rv0470A 0 0 0 0 0 0.0000 0.00 N/A +Rv0471c - hypothetical protein Rv0471c 0 0 0 0 0 0.0000 0.00 N/A +Rv0472c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0473 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0474 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0475 hbhA IRON-REGULATED HEPARIN BINDING HEMAGGLUTININ HBHA (ADHESIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0476 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0477 - POSSIBLE CONSERVED SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0478 deoC deoxyribose-phosphate aldolase 0 0 0 0 0 0.0000 0.00 N/A +Rv0479c - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0480c - POSSIBLE AMIDOHYDROLASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0481c - hypothetical protein Rv0481c 0 0 0 0 0 0.0000 0.00 N/A +Rv0482 murB UDP-N-acetylenolpyruvoylglucosamine reductase 0 0 0 0 0 0.0000 0.00 N/A +Rv0483 lprQ PROBABLE CONSERVED LIPOPROTEIN LPRQ 0 0 0 0 0 0.0000 0.00 N/A +Rv0484c - PROBABLE SHORT-CHAIN TYPE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0485 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0486 - MANNOSYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0487 - hypothetical protein Rv0487 0 0 0 0 0 0.0000 0.00 N/A +Rv0488 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0489 gpm1 phosphoglyceromutase 0 0 0 0 0 0.0000 0.00 N/A +Rv0490 senX3 PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 0 0 0 0 0 0.0000 0.00 N/A +Rv0491 regX3 TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0492c - PROBABLE OXIDOREDUCTASE GMC-TYPE 0 0 0 0 0 0.0000 0.00 N/A +Rv0492A - hypothetical protein Rv0492A 0 0 0 0 0 0.0000 0.00 N/A +Rv0493c - hypothetical protein Rv0493c 0 0 0 0 0 0.0000 0.00 N/A +Rv0494 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0495c - hypothetical protein Rv0495c 0 0 0 0 0 0.0000 0.00 N/A +Rv0496 - hypothetical protein Rv0496 0 0 0 0 0 0.0000 0.00 N/A +Rv0497 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0498 - hypothetical protein Rv0498 0 0 0 0 0 0.0000 0.00 N/A +Rv0499 - hypothetical protein Rv0499 0 0 0 0 0 0.0000 0.00 N/A +Rv0500 proC pyrroline-5-carboxylate reductase 0 0 0 0 0 0.0000 0.00 N/A +Rv0500A - hypothetical protein Rv0500A 0 0 0 0 0 0.0000 0.00 N/A +Rv0500B - hypothetical protein Rv0500B 0 0 0 0 0 0.0000 0.00 N/A +Rv0501 galE2 POSSIBLE UDP-GLUCOSE 4-EPIMERASE GALE2 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0502 - hypothetical protein Rv0502 0 0 0 0 0 0.0000 0.00 N/A +Rv0503c cmaA2 CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 2 CMAA2 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 2) (MYCOLIC ACID TRANS-CYCLOPROPANE SYNTHETASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0504c - hypothetical protein Rv0504c 0 0 0 0 0 0.0000 0.00 N/A +Rv0505c serB1 POSSIBLE PHOSPHOSERINE PHOSPHATASE SERB1 (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0506 mmpS2 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS2 0 0 0 0 0 0.0000 0.00 N/A +Rv0507 mmpL2 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL2 0 0 0 0 0 0.0000 0.00 N/A +Rv0508 - hypothetical protein Rv0508 0 0 0 0 0 0.0000 0.00 N/A +Rv0509 hemA glutamyl-tRNA reductase 0 0 0 0 0 0.0000 0.00 N/A +Rv0510 hemC porphobilinogen deaminase 0 0 0 0 0 0.0000 0.00 N/A +Rv0511 hemD PROBABLE UROPORPHYRIN-III C-METHYLTRANSFERASE HEMD (UROPORPHYRINOGEN III METHYLASE) (UROGEN III METHYLASE) (SUMT) (UROGEN III METHYLASE) (UROM) 0 0 0 0 0 0.0000 0.00 N/A +Rv0512 hemB delta-aminolevulinic acid dehydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0513 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0514 - POSSIBLE TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0515 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0516c - hypothetical protein Rv0516c 0 0 0 0 0 0.0000 0.00 N/A +Rv0517 - POSSIBLE MEMBRANE ACYLTRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0518 - POSSIBLE EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0519c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0520 - POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0521 - POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0522 gabP PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0523c - hypothetical protein Rv0523c 0 0 0 0 0 0.0000 0.00 N/A +Rv0524 hemL glutamate-1-semialdehyde aminotransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0525 - hypothetical protein Rv0525 0 0 0 0 0 0.0000 0.00 N/A +Rv0526 - POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0527 ccdA POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA 0 0 0 0 0 0.0000 0.00 N/A +Rv0528 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0529 ccsA POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCSA 0 0 0 0 0 0.0000 0.00 N/A +Rv0530 - hypothetical protein Rv0530 0 0 0 0 0 0.0000 0.00 N/A +Rv0531 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0532 PE_PGRS6 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0533c fabH 3-oxoacyl-(acyl carrier protein) synthase III 0 0 0 0 0 0.0000 0.00 N/A +Rv0534c menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0535 pnp 5'-methylthioadenosine phosphorylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0536 galE3 PROBABLE UDP-GLUCOSE 4-EPIMERASE GALE3 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0537c - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0538 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0539 - PROBABLE DOLICHYL-PHOSPHATE SUGAR SYNTHASE (DOLICHOL-PHOSPHATE SUGAR SYNTHETASE) (DOLICHOL-PHOSPHATE SUGAR TRANSFERASE) (SUGAR PHOSPHORYLDOLICHOL SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0540 - hypothetical protein Rv0540 0 0 0 0 0 0.0000 0.00 N/A +Rv0541c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0542c menE O-succinylbenzoic acid--CoA ligase 0 0 0 0 0 0.0000 0.00 N/A +Rv0543c - hypothetical protein Rv0543c 0 0 0 0 0 0.0000 0.00 N/A +Rv0544c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0545c pitA PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER INTEGRAL MEMBRANE PROTEIN PITA 0 0 0 0 0 0.0000 0.00 N/A +Rv0546c - hypothetical protein Rv0546c 0 0 0 0 0 0.0000 0.00 N/A +Rv0547c - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0548c menB naphthoate synthase 0 0 0 0 0 0.0000 0.00 N/A +Rv0549c - hypothetical protein Rv0549c 0 0 0 0 0 0.0000 0.00 N/A +Rv0550c - hypothetical protein Rv0550c 0 0 0 0 0 0.0000 0.00 N/A +Rv0551c fadD8 acyl-CoA synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0552 - hypothetical protein Rv0552 0 0 0 0 0 0.0000 0.00 N/A +Rv0553 menC O-succinylbenzoate synthase 0 0 0 0 0 0.0000 0.00 N/A +Rv0554 bpoC POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0555 menD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 0 0 0 0 0 0.0000 0.00 N/A +Rv0556 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0557 pimB MANNOSYLTRANSFERASE PIMB 0 0 0 0 0 0.0000 0.00 N/A +Rv0558 ubiE ubiquinone/menaquinone biosynthesis methyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0559c - POSSIBLE CONSERVED SECRETED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0560c - POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0561c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0562 grcC1 PROBABLE POLYPRENYL-DIPHOSPHATE SYNTHASE GRCC1 (POLYPRENYL PYROPHOSPHATE SYNTHETASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0563 htpX heat shock protein HtpX 0 0 0 0 0 0.0000 0.00 N/A +Rv0564c gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0565c - PROBABLE MONOOXYGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0566c - nucleotide-binding protein 0 0 0 0 0 0.0000 0.00 N/A +Rv0567 - PROBABLE METHYLTRANSFERASE/METHYLASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0568 cyp135B1 POSSIBLE CYTOCHROME P450 135B1 CYP135B1 0 0 0 0 0 0.0000 0.00 N/A +Rv0569 - hypothetical protein Rv0569 0 0 0 0 0 0.0000 0.00 N/A +Rv0570 nrdZ PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0571c - hypothetical protein Rv0571c 0 0 0 0 0 0.0000 0.00 N/A +Rv0572c - hypothetical protein Rv0572c 0 0 0 0 0 0.0000 0.00 N/A +Rv0573c - nicotinate phosphoribosyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0574c - hypothetical protein Rv0574c 0 0 0 0 0 0.0000 0.00 N/A +Rv0575c - hypothetical protein Rv0575c 0 0 0 0 0 0.0000 0.00 N/A +Rv0576 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0577 TB27.3 hypothetical protein Rv0577 0 0 0 0 0 0.0000 0.00 N/A +Rv0578c PE_PGRS7 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0579 - hypothetical protein Rv0579 0 0 0 0 0 0.0000 0.00 N/A +Rv0580c - hypothetical protein Rv0580c 0 0 0 0 0 0.0000 0.00 N/A +Rv0581 - hypothetical protein Rv0581 0 0 0 0 0 0.0000 0.00 N/A +Rv0582 - hypothetical protein Rv0582 0 0 0 0 0 0.0000 0.00 N/A +Rv0583c lpqN PROBABLE CONSERVED LIPOPROTEIN LPQN 0 0 0 0 0 0.0000 0.00 N/A +Rv0584 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0585c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0586 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (GNTR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0587 yrbE2A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2A 0 0 0 0 0 0.0000 0.00 N/A +Rv0588 yrbE2B CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2B 0 0 0 0 0 0.0000 0.00 N/A +Rv0589 mce2A MCE-FAMILY PROTEIN MCE2A 0 0 0 0 0 0.0000 0.00 N/A +Rv0590 mce2B MCE-FAMILY PROTEIN MCE2B 0 0 0 0 0 0.0000 0.00 N/A +Rv0590A - MCE-FAMILY RELATED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0591 mce2C MCE-FAMILY PROTEIN MCE2C 0 0 0 0 0 0.0000 0.00 N/A +Rv0592 mce2D MCE-FAMILY PROTEIN MCE2D 0 0 0 0 0 0.0000 0.00 N/A +Rv0593 lprL POSSIBLE MCE-FAMILY LIPOPROTEIN LPRL (MCE-FAMILY LIPOPROTEIN MCE2E) 0 0 0 0 0 0.0000 0.00 N/A +Rv0594 mce2F MCE-FAMILY PROTEIN MCE2F 0 0 0 0 0 0.0000 0.00 N/A +Rv0595c - hypothetical protein Rv0595c 0 0 0 0 0 0.0000 0.00 N/A +Rv0596c - hypothetical protein Rv0596c 0 0 0 0 0 0.0000 0.00 N/A +Rv0597c - hypothetical protein Rv0597c 0 0 0 0 0 0.0000 0.00 N/A +Rv0598c - hypothetical protein Rv0598c 0 0 0 0 0 0.0000 0.00 N/A +Rv0599c - hypothetical protein Rv0599c 0 0 0 0 0 0.0000 0.00 N/A +Rv0600c - PROBABLE TWO COMPONENT SENSOR KINASE -SECOND PART 0 0 0 0 0 0.0000 0.00 N/A +Rv0601c - PROBABLE TWO COMPONENT SENSOR KINASE -FIRST PART 0 0 0 0 0 0.0000 0.00 N/A +Rv0602c tcrA PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA 0 0 0 0 0 0.0000 0.00 N/A +Rv0603 - POSSIBLE EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0604 lpqO PROBABLE CONSERVED LIPOPROTEIN LPQO 0 0 0 0 0 0.0000 0.00 N/A +Rv0605 - POSSIBLE RESOLVASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0606 - POSSIBLE TRANSPOSASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0607 - hypothetical protein Rv0607 0 0 0 0 0 0.0000 0.00 N/A +Rv0608 - hypothetical protein Rv0608 0 0 0 0 0 0.0000 0.00 N/A +Rv0609 - hypothetical protein Rv0609 0 0 0 0 0 0.0000 0.00 N/A +Rv0609A - hypothetical protein Rv0609A 0 0 0 0 0 0.0000 0.00 N/A +Rv0610c - hypothetical protein Rv0610c 0 0 0 0 0 0.0000 0.00 N/A +Rv0611c - hypothetical protein Rv0611c 0 0 0 0 0 0.0000 0.00 N/A +Rv0612 - hypothetical protein Rv0612 0 0 0 0 0 0.0000 0.00 N/A +Rv0613c - hypothetical protein Rv0613c 0 0 0 0 0 0.0000 0.00 N/A +Rv0614 - hypothetical protein Rv0614 0 0 0 0 0 0.0000 0.00 N/A +Rv0615 - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0616c - hypothetical protein Rv0616c 0 0 0 0 0 0.0000 0.00 N/A +Rv0617 - hypothetical protein Rv0617 0 0 0 0 0 0.0000 0.00 N/A +Rv0618 galTa PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTA 0 0 0 0 0 0.0000 0.00 N/A +Rv0619 galTb PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTB 0 0 0 0 0 0.0000 0.00 N/A +Rv0620 galK galactokinase 0 0 0 0 0 0.0000 0.00 N/A +Rv0621 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0622 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0623 - hypothetical protein Rv0623 0 0 0 0 0 0.0000 0.00 N/A +Rv0624 - hypothetical protein Rv0624 0 0 0 0 0 0.0000 0.00 N/A +Rv0625c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0626 - hypothetical protein Rv0626 0 0 0 0 0 0.0000 0.00 N/A +Rv0627 - hypothetical protein Rv0627 0 0 0 0 0 0.0000 0.00 N/A +Rv0628c - hypothetical protein Rv0628c 0 0 0 0 0 0.0000 0.00 N/A +Rv0629c recD PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0630c recB PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0631c recC PROBABLE EXONUCLEASE V (GAMMA CHAIN) RECC (EXODEOXYRIBONUCLEASE V GAMMA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0632c echA3 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0633c - POSSIBLE EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0634c - POSSIBLE GLYOXALASE II (HYDROXYACYLGLUTATHIONE HYDROLASE) (GLX II) 0 0 0 0 0 0.0000 0.00 N/A +Rv0634A - hypothetical protein Rv0634A 0 0 0 0 0 0.0000 0.00 N/A +Rv0634B rpmG 50S ribosomal protein L33 0 0 0 0 0 0.0000 0.00 N/A +Rv0635 - hypothetical protein Rv0635 0 0 0 0 0 0.0000 0.00 N/A +Rv0636 - hypothetical protein Rv0636 0 0 0 0 0 0.0000 0.00 N/A +Rv0637 - hypothetical protein Rv0637 0 0 0 0 0 0.0000 0.00 N/A +Rv0638 secE preprotein translocase subunit SecE 0 0 0 0 0 0.0000 0.00 N/A +Rv0639 nusG transcription antitermination protein NusG 0 0 0 0 0 0.0000 0.00 N/A +Rv0640 rplK 50S ribosomal protein L11 0 0 0 0 0 0.0000 0.00 N/A +Rv0641 rplA 50S ribosomal protein L1 0 0 0 0 0 0.0000 0.00 N/A +Rv0642c mmaA4 METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0643c mmaA3 METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0644c mmaA2 METHOXY MYCOLIC ACID SYNTHASE 2 MMAA2 (METHYL MYCOLIC ACID SYNTHASE 2) (MMA2) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0645c mmaA1 METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0646c lipG PROBABLE LIPASE/ESTERASE LIPG 0 0 0 0 0 0.0000 0.00 N/A +Rv0647c - hypothetical protein Rv0647c 0 0 0 0 0 0.0000 0.00 N/A +Rv0648 - ALPHA-MANNOSIDASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0649 fabD2 POSSIBLE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE FABD2 (MCT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0650 - POSSIBLE SUGAR KINASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0651 rplJ 50S ribosomal protein L10 0 0 0 0 0 0.0000 0.00 N/A +Rv0652 rplL 50S ribosomal protein L7/L12 0 0 0 0 0 0.0000 0.00 N/A +Rv0653c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0654 - PROBABLE DIOXYGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0655 mkl POSSIBLE RIBONUCLEOTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER MKL 0 0 0 0 0 0.0000 0.00 N/A +Rv0656c - hypothetical protein Rv0656c 0 0 0 0 0 0.0000 0.00 N/A +Rv0657c - hypothetical protein Rv0657c 0 0 0 0 0 0.0000 0.00 N/A +Rv0658c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0659c - hypothetical protein Rv0659c 0 0 0 0 0 0.0000 0.00 N/A +Rv0660c - hypothetical protein Rv0660c 0 0 0 0 0 0.0000 0.00 N/A +Rv0661c - hypothetical protein Rv0661c 0 0 0 0 0 0.0000 0.00 N/A +Rv0662c - hypothetical protein Rv0662c 0 0 0 0 0 0.0000 0.00 N/A +Rv0663 atsD POSSIBLE ARYLSULFATASE ATSD (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0664 - hypothetical protein Rv0664 0 0 0 0 0 0.0000 0.00 N/A +Rv0665 - hypothetical protein Rv0665 0 0 0 0 0 0.0000 0.00 N/A +Rv0666 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0667 rpoB DNA-directed RNA polymerase subunit beta 0 0 0 0 0 0.0000 0.00 N/A +Rv0668 rpoC DNA-directed RNA polymerase subunit beta' 0 0 0 0 0 0.0000 0.00 N/A +Rv0669c - POSSIBLE HYDROLASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0670 end endonuclease IV 0 0 0 0 0 0.0000 0.00 N/A +Rv0671 lpqP POSSIBLE CONSERVED LIPOPROTEIN LPQP 0 0 0 0 0 0.0000 0.00 N/A +Rv0672 fadE8 PROBABLE ACYL-CoA DEHYDROGENASE FADE8 0 0 0 0 0 0.0000 0.00 N/A +Rv0673 echA4 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0674 - hypothetical protein Rv0674 0 0 0 0 0 0.0000 0.00 N/A +Rv0675 echA5 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0676c mmpL5 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL5 0 0 0 0 0 0.0000 0.00 N/A +Rv0677c mmpS5 POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 0 0 0 0 0 0.0000 0.00 N/A +Rv0678 - hypothetical protein Rv0678 0 0 0 0 0 0.0000 0.00 N/A +Rv0679c - CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0680c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0681 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0682 rpsL 30S ribosomal protein S12 0 0 0 0 0 0.0000 0.00 N/A +Rv0683 rpsG 30S ribosomal protein S7 0 0 0 0 0 0.0000 0.00 N/A +Rv0684 fusA1 elongation factor G 0 0 0 0 0 0.0000 0.00 N/A +Rv0685 tuf elongation factor Tu 0 0 0 0 0 0.0000 0.00 N/A +Rv0686 - PROBABLE MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0687 fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0 0 0 0 0.0000 0.00 N/A +Rv0688 - PUTATIVE FERREDOXIN REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0689c - hypothetical protein Rv0689c 0 0 0 0 0 0.0000 0.00 N/A +Rv0690c - hypothetical protein Rv0690c 0 0 0 0 0 0.0000 0.00 N/A +Rv0691c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0692 - hypothetical protein Rv0692 0 0 0 0 0 0.0000 0.00 N/A +Rv0693 pqqE PROBABLE COENZYME PQQ SYNTHESIS PROTEIN E PQQE (COENZYME PQQ SYNTHESIS PROTEIN III) 0 0 0 0 0 0.0000 0.00 N/A +Rv0694 lldD1 POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD1 0 0 0 0 0 0.0000 0.00 N/A +Rv0695 - hypothetical protein Rv0695 0 0 0 0 0 0.0000 0.00 N/A +Rv0696 - PROBABLE MEMBRANE SUGAR TRANSFERASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0697 - PROBABLE DEHYDROGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0698 - hypothetical protein Rv0698 0 0 0 0 0 0.0000 0.00 N/A +Rv0699 - hypothetical protein Rv0699 0 0 0 0 0 0.0000 0.00 N/A +Rv0700 rpsJ 30S ribosomal protein S10 0 0 0 0 0 0.0000 0.00 N/A +Rv0701 rplC 50S ribosomal protein L3 0 0 0 0 0 0.0000 0.00 N/A +Rv0702 rplD 50S ribosomal protein L4 0 0 0 0 0 0.0000 0.00 N/A +Rv0703 rplW 50S ribosomal protein L23 0 0 0 0 0 0.0000 0.00 N/A +Rv0704 rplB 50S ribosomal protein L2 0 0 0 0 0 0.0000 0.00 N/A +Rv0705 rpsS 30S ribosomal protein S19 0 0 0 0 0 0.0000 0.00 N/A +Rv0706 rplV 50S ribosomal protein L22 0 0 0 0 0 0.0000 0.00 N/A +Rv0707 rpsC 30S ribosomal protein S3 0 0 0 0 0 0.0000 0.00 N/A +Rv0708 rplP 50S ribosomal protein L16 0 0 0 0 0 0.0000 0.00 N/A +Rv0709 rpmC 50S ribosomal protein L29 0 0 0 0 0 0.0000 0.00 N/A +Rv0710 rpsQ 30S ribosomal protein S17 0 0 0 0 0 0.0000 0.00 N/A +Rv0711 atsA POSSIBLE ARYLSULFATASE ATSA (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0712 - hypothetical protein Rv0712 0 0 0 0 0 0.0000 0.00 N/A +Rv0713 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0714 rplN 50S ribosomal protein L14 0 0 0 0 0 0.0000 0.00 N/A +Rv0715 rplX 50S ribosomal protein L24 0 0 0 0 0 0.0000 0.00 N/A +Rv0716 rplE 50S ribosomal protein L5 0 0 0 0 0 0.0000 0.00 N/A +Rv0717 rpsN 30S ribosomal protein S14 0 0 0 0 0 0.0000 0.00 N/A +Rv0718 rpsH 30S ribosomal protein S8 0 0 0 0 0 0.0000 0.00 N/A +Rv0719 rplF 50S ribosomal protein L6 0 0 0 0 0 0.0000 0.00 N/A +Rv0720 rplR 50S ribosomal protein L18 0 0 0 0 0 0.0000 0.00 N/A +Rv0721 rpsE 30S ribosomal protein S5 0 0 0 0 0 0.0000 0.00 N/A +Rv0722 rpmD 50S ribosomal protein L30 0 0 0 0 0 0.0000 0.00 N/A +Rv0723 rplO 50S ribosomal protein L15 0 0 0 0 0 0.0000 0.00 N/A +Rv0724 sppA POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0724A - hypothetical protein Rv0724A 0 0 0 0 0 0.0000 0.00 N/A +Rv0725c - hypothetical protein Rv0725c 0 0 0 0 0 0.0000 0.00 N/A +Rv0726c - hypothetical protein Rv0726c 0 0 0 0 0 0.0000 0.00 N/A +Rv0727c fucA L-fuculose-phosphate aldolase 0 0 0 0 0 0.0000 0.00 N/A +Rv0728c serA2 POSSIBLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA2 (PHOSPHOGLYCERATE DEHYDROGENASE) (PGDH) 0 0 0 0 0 0.0000 0.00 N/A +Rv0729 xylB POSSIBLE D-XYLULOSE KINASE XYLB (XYLULOKINASE) (XYLULOSE KINASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0730 - hypothetical protein Rv0730 0 0 0 0 0 0.0000 0.00 N/A +Rv0731c - hypothetical protein Rv0731c 0 0 0 0 0 0.0000 0.00 N/A +Rv0732 secY preprotein translocase subunit SecY 0 0 0 0 0 0.0000 0.00 N/A +Rv0733 adk adenylate kinase 0 0 0 0 0 0.0000 0.00 N/A +Rv0734 mapA methionine aminopeptidase 0 0 0 0 0 0.0000 0.00 N/A +Rv0735 sigL RNA polymerase sigma factor SigL 0 0 0 0 0 0.0000 0.00 N/A +Rv0736 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0737 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0738 - hypothetical protein Rv0738 0 0 0 0 0 0.0000 0.00 N/A +Rv0739 - hypothetical protein Rv0739 0 0 0 0 0 0.0000 0.00 N/A +Rv0740 - hypothetical protein Rv0740 0 0 0 0 0 0.0000 0.00 N/A +Rv0741 - PROBABLE TRANSPOSASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0742 PE_PGRS8 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0743c - hypothetical protein Rv0743c 0 0 0 0 0 0.0000 0.00 N/A +Rv0744c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0745 - hypothetical protein Rv0745 0 0 0 0 0 0.0000 0.00 N/A +Rv0746 PE_PGRS9 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0747 PE_PGRS10 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0748 - hypothetical protein Rv0748 0 0 0 0 0 0.0000 0.00 N/A +Rv0749 - hypothetical protein Rv0749 0 0 0 0 0 0.0000 0.00 N/A +Rv0749A - hypothetical protein Rv0749A 0 0 0 0 0 0.0000 0.00 N/A +Rv0750 - hypothetical protein Rv0750 0 0 0 0 0 0.0000 0.00 N/A +Rv0751c mmsB PROBABLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE MMSB (HIBADH) 0 0 0 0 0 0.0000 0.00 N/A +Rv0752c fadE9 PROBABLE ACYL-CoA DEHYDROGENASE FADE9 0 0 0 0 0 0.0000 0.00 N/A +Rv0753c mmsA PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) 0 0 0 0 0 0.0000 0.00 N/A +Rv0754 PE_PGRS11 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0755c PPE12 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0755A - PUTATIVE TRANSPOSASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0756c - hypothetical protein Rv0756c 0 0 0 0 0 0.0000 0.00 N/A +Rv0757 phoP POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP 0 0 0 0 0 0.0000 0.00 N/A +Rv0758 phoR POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE ASSOCIATED PHOR 0 0 0 0 0 0.0000 0.00 N/A +Rv0759c - hypothetical protein Rv0759c 0 0 0 0 0 0.0000 0.00 N/A +Rv0760c - hypothetical protein Rv0760c 0 0 0 0 0 0.0000 0.00 N/A +Rv0761c adhB POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB 0 0 0 0 0 0.0000 0.00 N/A +Rv0762c - hypothetical protein Rv0762c 0 0 0 0 0 0.0000 0.00 N/A +Rv0763c - POSSIBLE FERREDOXIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0764c cyp51 CYTOCHROME P450 51 CYP51 (CYPL1) (P450-L1A1) (STEROL 14-ALPHA DEMETHYLASE) (LANOSTEROL 14-ALPHA DEMETHYLASE) (P450-14DM) 0 0 0 0 0 0.0000 0.00 N/A +Rv0765c - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0766c cyp123 PROBABLE CYTOCHROME P450 123 CYP123 0 0 0 0 0 0.0000 0.00 N/A +Rv0767c - hypothetical protein Rv0767c 0 0 0 0 0 0.0000 0.00 N/A +Rv0768 aldA PROBABLE ALDEHYDE DEHYDROGENASE NAD DEPENDENT ALDA (ALDEHYDE DEHYDROGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0769 - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0770 - PROBABLE DEHYDROGENASE/REDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0771 - POSSIBLE 4-CARBOXYMUCONOLACTONE DECARBOXYLASE (CMD) 0 0 0 0 0 0.0000 0.00 N/A +Rv0772 purD phosphoribosylamine--glycine ligase 0 0 0 0 0 0.0000 0.00 N/A +Rv0773c ggtA PROBABLE BIFUNCTIONAL ACYLASE GGTA: CEPHALOSPORIN ACYLASE (GL-7ACA ACYLASE) + GAMMA-GLUTAMYLTRANSPEPTIDASE (GGT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0774c - PROBABLE CONSERVED EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0775 - hypothetical protein Rv0775 0 0 0 0 0 0.0000 0.00 N/A +Rv0776c - hypothetical protein Rv0776c 0 0 0 0 0 0.0000 0.00 N/A +Rv0777 purB adenylosuccinate lyase 0 0 0 0 0 0.0000 0.00 N/A +Rv0778 cyp126 POSSIBLE CYTOCHROME P450 126 CYP126 0 0 0 0 0 0.0000 0.00 N/A +Rv0779c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0780 hemH phosphoribosylaminoimidazole-succinocarboxamide synthase 0 0 0 0 0 0.0000 0.00 N/A +Rv0781 ptrBa PROBABLE PROTEASE II PTRBA 0 0 0 0 0 0.0000 0.00 N/A +Rv0782 ptrBb PROBABLE PROTEASE II PTRBB 0 0 0 0 0 0.0000 0.00 N/A +Rv0783c emrB POSSIBLE MULTIDRUG RESISTANCE INTEGRAL MEMBRANE EFFLUX PROTEIN EMRB 0 0 0 0 0 0.0000 0.00 N/A +Rv0784 - hypothetical protein Rv0784 0 0 0 0 0 0.0000 0.00 N/A +Rv0785 - putative FAD-binding dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0786c - hypothetical protein Rv0786c 0 0 0 0 0 0.0000 0.00 N/A +Rv0787 - hypothetical protein Rv0787 0 0 0 0 0 0.0000 0.00 N/A +Rv0787A - phosphoribosylformylglycinamidine synthase subunit PurS 0 0 0 0 0 0.0000 0.00 N/A +Rv0788 purQ phosphoribosylformylglycinamidine synthase subunit I 0 0 0 0 0 0.0000 0.00 N/A +Rv0789c - hypothetical protein Rv0789c 0 0 0 0 0 0.0000 0.00 N/A +Rv0790c - hypothetical protein Rv0790c 0 0 0 0 0 0.0000 0.00 N/A +Rv0791c - hypothetical protein Rv0791c 0 0 0 0 0 0.0000 0.00 N/A +Rv0792c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0793 - hypothetical protein Rv0793 0 0 0 0 0 0.0000 0.00 N/A +Rv0794c - PROBABLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0795 - PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0796 - PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 0 0 0 0 0 0.0000 0.00 N/A +Rv0797 - IS1547 transposase 0 0 0 0 0 0.0000 0.00 N/A +Rv0798c cfp29 29 KDa ANTIGEN CFP29 0 0 0 0 0 0.0000 0.00 N/A +Rv0799c - hypothetical protein Rv0799c 0 0 0 0 0 0.0000 0.00 N/A +Rv0800 pepC putative aminopeptidase 2 0 0 0 0 0 0.0000 0.00 N/A +Rv0801 - hypothetical protein Rv0801 0 0 0 0 0 0.0000 0.00 N/A +Rv0802c - hypothetical protein Rv0802c 0 0 0 0 0 0.0000 0.00 N/A +Rv0803 purL phosphoribosylformylglycinamidine synthase II 0 0 0 0 0 0.0000 0.00 N/A +Rv0804 - hypothetical protein Rv0804 0 0 0 0 0 0.0000 0.00 N/A +Rv0805 - hypothetical protein Rv0805 0 0 0 0 0 0.0000 0.00 N/A +Rv0806c cpsY POSSIBLE UDP-GLUCOSE-4-EPIMERASE CPSY (GALACTOWALDENASE) (UDP-GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE-4-EPIMERASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0807 - hypothetical protein Rv0807 0 0 0 0 0 0.0000 0.00 N/A +Rv0808 purF amidophosphoribosyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0809 purM phosphoribosylaminoimidazole synthetase 0 0 0 0 0 0.0000 0.00 N/A +Rv0810c - hypothetical protein Rv0810c 0 0 0 0 0 0.0000 0.00 N/A +Rv0811c - hypothetical protein Rv0811c 0 0 0 0 0 0.0000 0.00 N/A +Rv0812 - 4-amino-4-deoxychorismate lyase 0 0 0 0 0 0.0000 0.00 N/A +Rv0813c - hypothetical protein Rv0813c 0 0 0 0 0 0.0000 0.00 N/A +Rv0814c sseC2 CONSERVED HYPOTHETICAL PROTEIN SSEC2 0 0 0 0 0 0.0000 0.00 N/A +Rv0815c cysA2 PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0816c thiX PROBABLE THIOREDOXIN THIX 0 0 0 0 0 0.0000 0.00 N/A +Rv0817c - PROBABLE CONSERVED EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0818 - TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0819 - hypothetical protein Rv0819 0 0 0 0 0 0.0000 0.00 N/A +Rv0820 phoT PROBABLE PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PHOT 0 0 0 0 0 0.0000 0.00 N/A +Rv0821c phoY2 PROBABLE PHOSPHATE-TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PHOY2 0 0 0 0 0 0.0000 0.00 N/A +Rv0822c - hypothetical protein Rv0822c 0 0 0 0 0 0.0000 0.00 N/A +Rv0823c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0824c desA1 PROBABLE ACYL- 0 0 0 0 0 0.0000 0.00 N/A +Rv0825c - hypothetical protein Rv0825c 0 0 0 0 0 0.0000 0.00 N/A +Rv0826 - hypothetical protein Rv0826 0 0 0 0 0 0.0000 0.00 N/A +Rv0827c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0828c - POSSIBLE DEAMINASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0829 - POSSIBLE TRANSPOSASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0830 - hypothetical protein Rv0830 0 0 0 0 0 0.0000 0.00 N/A +Rv0831c - hypothetical protein Rv0831c 0 0 0 0 0 0.0000 0.00 N/A +Rv0832 PE_PGRS12 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0833 PE_PGRS13 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0834c PE_PGRS14 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0835 lpqQ POSSIBLE LIPOPROTEIN LPQQ 0 0 0 0 0 0.0000 0.00 N/A +Rv0836c - hypothetical protein Rv0836c 0 0 0 0 0 0.0000 0.00 N/A +Rv0837c - hypothetical protein Rv0837c 0 0 0 0 0 0.0000 0.00 N/A +Rv0838 lpqR PROBABLE CONSERVED LIPOPROTEIN LPQR 0 0 0 0 0 0.0000 0.00 N/A +Rv0839 - hypothetical protein Rv0839 0 0 0 0 0 0.0000 0.00 N/A +Rv0840c pip PROBABLE PROLINE IMINOPEPTIDASE PIP (PROLYL AMINOPEPTIDASE) (PAP) 0 0 0 0 0 0.0000 0.00 N/A +Rv0841 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0842 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0843 - PROBABLE DEHYDROGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0844c narL POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL 0 0 0 0 0 0.0000 0.00 N/A +Rv0845 - POSSIBLE TWO COMPONENT SENSOR KINASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0846c - PROBABLE OXIDASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0847 lpqS PROBABLE LIPOPROTEIN LPQS 0 0 0 0 0 0.0000 0.00 N/A +Rv0848 cysK2 POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0849 - PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0850 - PUTATIVE TRANSPOSASE (FRAGMENT) 0 0 0 0 0 0.0000 0.00 N/A +Rv0851c - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0852 fadD16 POSSIBLE FATTY-ACID-CoA LIGASE FADD16 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0853c pdc PROBABLE PYRUVATE OR INDOLE-3-PYRUVATE DECARBOXYLASE PDC 0 0 0 0 0 0.0000 0.00 N/A +Rv0854 - hypothetical protein Rv0854 0 0 0 0 0 0.0000 0.00 N/A +Rv0855 far PROBABLE FATTY-ACID-CoA RACEMASE FAR 0 0 0 0 0 0.0000 0.00 N/A +Rv0856 - hypothetical protein Rv0856 0 0 0 0 0 0.0000 0.00 N/A +Rv0857 - hypothetical protein Rv0857 0 0 0 0 0 0.0000 0.00 N/A +Rv0858c - aminotransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0859 fadA acetyl-CoA acetyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0860 fadB PROBABLE FATTY OXIDATION PROTEIN FADB 0 0 0 0 0 0.0000 0.00 N/A +Rv0861c ercc3 PROBABLE DNA HELICASE ERCC3 0 0 0 0 0 0.0000 0.00 N/A +Rv0862c - hypothetical protein Rv0862c 0 0 0 0 0 0.0000 0.00 N/A +Rv0863 - hypothetical protein Rv0863 0 0 0 0 0 0.0000 0.00 N/A +Rv0864 moaC molybdenum cofactor biosynthesis protein C 0 0 0 0 0 0.0000 0.00 N/A +Rv0865 mog PROBABLE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0866 moaE2 PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E2 MOAE2 (MOLYBDOPTERIN CONVERTING FACTOR LARGE SUBUNIT) (MOLYBDOPTERIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0867c rpfA POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA 0 0 0 0 0 0.0000 0.00 N/A +Rv0868c moaD2 PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D 2 MOAD2 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0869c moaA molybdenum cofactor biosynthesis protein A 0 0 0 0 0 0.0000 0.00 N/A +Rv0870c - hypothetical protein Rv0870c 0 0 0 0 0 0.0000 0.00 N/A +Rv0871 cspB PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB 0 0 0 0 0 0.0000 0.00 N/A +Rv0872c PE_PGRS15 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0873 fadE10 PROBABLE ACYL-CoA DEHYDROGENASE FADE10 0 0 0 0 0 0.0000 0.00 N/A +Rv0874c - hypothetical protein Rv0874c 0 0 0 0 0 0.0000 0.00 N/A +Rv0875c - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0876c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0877 - hypothetical protein Rv0877 0 0 0 0 0 0.0000 0.00 N/A +Rv0878c PPE13 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0879c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0880 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY MARR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0881 - POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0882 - PROBABLE TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0883c - hypothetical protein Rv0883c 0 0 0 0 0 0.0000 0.00 N/A +Rv0884c serC phosphoserine aminotransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0885 - hypothetical protein Rv0885 0 0 0 0 0 0.0000 0.00 N/A +Rv0886 fprB PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0887c - hypothetical protein Rv0887c 0 0 0 0 0 0.0000 0.00 N/A +Rv0888 - PROBABLE EXPORTED PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0889c citA citrate synthase 2 0 0 0 0 0 0.0000 0.00 N/A +Rv0890c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0891c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0892 - PROBABLE MONOOXYGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0893c - hypothetical protein Rv0893c 0 0 0 0 0 0.0000 0.00 N/A +Rv0894 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY LUXR-FAMILY) 0 0 0 0 0 0.0000 0.00 N/A +Rv0895 - hypothetical protein Rv0895 0 0 0 0 0 0.0000 0.00 N/A +Rv0896 gltA type II citrate synthase 0 0 0 0 0 0.0000 0.00 N/A +Rv0897c - PROBABLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0898c - hypothetical protein Rv0898c 0 0 0 0 0 0.0000 0.00 N/A +Rv0899 ompA OUTER MEMBRANE PROTEIN A OMPA 0 0 0 0 0 0.0000 0.00 N/A +Rv0900 - POSSIBLE MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0901 - POSSIBLE CONSERVED EXPORTED OR MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0902c prrB TWO COMPONENT SENSOR HISTIDINE KINASE PRRB 0 0 0 0 0 0.0000 0.00 N/A +Rv0903c prrA TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA 0 0 0 0 0 0.0000 0.00 N/A +Rv0904c accD3 PUTATIVE ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE (SUBUNIT BETA) ACCD3 (ACCASE BETA CHAIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0905 echA6 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0906 - hypothetical protein Rv0906 0 0 0 0 0 0.0000 0.00 N/A +Rv0907 - hypothetical protein Rv0907 0 0 0 0 0 0.0000 0.00 N/A +Rv0908 ctpE PROBABLE METAL CATION TRANSPORTER ATPASE P-TYPE CTPE 0 0 0 0 0 0.0000 0.00 N/A +Rv0909 - hypothetical protein Rv0909 0 0 0 0 0 0.0000 0.00 N/A +Rv0910 - hypothetical protein Rv0910 0 0 0 0 0 0.0000 0.00 N/A +Rv0911 - hypothetical protein Rv0911 0 0 0 0 0 0.0000 0.00 N/A +Rv0912 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0913c - POSSIBLE DIOXYGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0914c - acetyl-CoA acetyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0915c PPE14 PPE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0916c PE7 PE FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0917 betP POSSIBLE GLYCINE BETAINE TRANSPORT INTEGRAL MEMBRANE PROTEIN BETP 0 0 0 0 0 0.0000 0.00 N/A +Rv0918 - hypothetical protein Rv0918 0 0 0 0 0 0.0000 0.00 N/A +Rv0919 - hypothetical protein Rv0919 0 0 0 0 0 0.0000 0.00 N/A +Rv0920c - PROBABLE TRANSPOSASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0921 - POSSIBLE RESOLVASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0922 - POSSIBLE TRANSPOSASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0923c - hypothetical protein Rv0923c 0 0 0 0 0 0.0000 0.00 N/A +Rv0924c mntH manganese transport protein MntH 0 0 0 0 0 0.0000 0.00 N/A +Rv0925c - hypothetical protein Rv0925c 0 0 0 0 0 0.0000 0.00 N/A +Rv0926c - hypothetical protein Rv0926c 0 0 0 0 0 0.0000 0.00 N/A +Rv0927c - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0928 pstS3 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS3 (PBP-3) (PSTS3) (PHOS1) 0 0 0 0 0 0.0000 0.00 N/A +Rv0929 pstC2 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC2 0 0 0 0 0 0.0000 0.00 N/A +Rv0930 pstA1 PROBABLE PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA1 0 0 0 0 0 0.0000 0.00 N/A +Rv0931c pknD TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) 0 0 0 0 0 0.0000 0.00 N/A +Rv0932c pstS2 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS2 (PBP-2) (PSTS2) 0 0 0 0 0 0.0000 0.00 N/A +Rv0933 pstB PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PSTB 0 0 0 0 0 0.0000 0.00 N/A +Rv0934 pstS1 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) 0 0 0 0 0 0.0000 0.00 N/A +Rv0935 pstC1 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC1 0 0 0 0 0 0.0000 0.00 N/A +Rv0936 pstA2 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA2 0 0 0 0 0 0.0000 0.00 N/A +Rv0937c - hypothetical protein Rv0937c 0 0 0 0 0 0.0000 0.00 N/A +Rv0938 - ATP-dependent DNA ligase 0 0 0 0 0 0.0000 0.00 N/A +Rv0939 - POSSIBLE BIFUNCTIONAL ENZYME: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD ISOMERASE) + CYCLASE/DEHYDRASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0940c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0941c - hypothetical protein Rv0941c 0 0 0 0 0 0.0000 0.00 N/A +Rv0942 - hypothetical protein Rv0942 0 0 0 0 0 0.0000 0.00 N/A +Rv0943c - PROBABLE MONOOXYGENASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0944 - POSSIBLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) 0 0 0 0 0 0.0000 0.00 N/A +Rv0945 - short chain dehydrogenase 0 0 0 0 0 0.0000 0.00 N/A +Rv0946c pgi glucose-6-phosphate isomerase 0 0 0 0 0 0.0000 0.00 N/A +Rv0948c - hypothetical protein Rv0948c 0 0 0 0 0 0.0000 0.00 N/A +Rv0949 uvrD1 PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 0 0 0 0 0 0.0000 0.00 N/A +Rv0950c - hypothetical protein Rv0950c 0 0 0 0 0 0.0000 0.00 N/A +Rv0951 sucC succinyl-CoA synthetase subunit beta 0 0 0 0 0 0.0000 0.00 N/A +Rv0952 sucD succinyl-CoA synthetase subunit alpha 0 0 0 0 0 0.0000 0.00 N/A +Rv0953c - POSSIBLE OXIDOREDUCTASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0954 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0955 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0956 purN phosphoribosylglycinamide formyltransferase 0 0 0 0 0 0.0000 0.00 N/A +Rv0957 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 0 0 0 0 0 0.0000 0.00 N/A +Rv0958 - POSSIBLE MAGNESIUM CHELATASE 0 0 0 0 0 0.0000 0.00 N/A +Rv0959 - hypothetical protein Rv0959 0 0 0 0 0 0.0000 0.00 N/A +Rv0960 - hypothetical protein Rv0960 0 0 0 0 0 0.0000 0.00 N/A +Rv0961 - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0962c lprP POSSIBLE LIPOPROTEIN LPRP 0 0 0 0 0 0.0000 0.00 N/A +Rv0963c - hypothetical protein Rv0963c 0 0 0 0 0 0.0000 0.00 N/A +Rv0964c - hypothetical protein Rv0964c 0 0 0 0 0 0.0000 0.00 N/A +Rv0965c - hypothetical protein Rv0965c 0 0 0 0 0 0.0000 0.00 N/A +Rv0966c - hypothetical protein Rv0966c 0 0 0 0 0 0.0000 0.00 N/A +Rv0967 - hypothetical protein Rv0967 0 0 0 0 0 0.0000 0.00 N/A +Rv0968 - hypothetical protein Rv0968 0 0 0 0 0 0.0000 0.00 N/A +Rv0969 ctpV PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE CTPV 0 0 0 0 0 0.0000 0.00 N/A +Rv0970 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0971c echA7 enoyl-CoA hydratase 0 0 0 0 0 0.0000 0.00 N/A +Rv0972c fadE12 PROBABLE ACYL-CoA DEHYDROGENASE FADE12 0 0 0 0 0 0.0000 0.00 N/A +Rv0973c accA2 PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA2: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) 0 0 0 0 0 0.0000 0.00 N/A +Rv0974c accD2 PROBABLE ACETYL-/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD2 0 0 0 0 0 0.0000 0.00 N/A +Rv0975c fadE13 PROBABLE ACYL-CoA DEHYDROGENASE FADE13 0 0 0 0 0 0.0000 0.00 N/A +Rv0976c - hypothetical protein Rv0976c 0 0 0 0 0 0.0000 0.00 N/A +Rv0977 PE_PGRS16 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0978c PE_PGRS17 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0979c - hypothetical protein Rv0979c 0 0 0 0 0 0.0000 0.00 N/A +Rv0979A rpmF 50S ribosomal protein L32 0 0 0 0 0 0.0000 0.00 N/A +Rv0980c PE_PGRS18 PE-PGRS FAMILY PROTEIN 0 0 0 0 0 0.0000 0.00 N/A +Rv0981 mprA MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) 0 0 0 0 0 0.0000 0.00 N/A +Rv0982 mprB PROBABLE TWO COMPONENT SENSOR KINASE MPRB 0 0 0 0 0 0.0000 0.00 N/A +Rv0983 pepD PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B) 0 0 0 0 0 0.0000 0.00 N/A +Rv0984 moaB2 POSSIBLE PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2 (PHS) (4-ALPHA-HYDROXY-TETRAHYDROPTERIN DEHYDRATASE) (PTERIN-4-A-CARBINOLAMINE DEHYDRATASE) (PHENYLALANINE HYDROXYLASE-STIMULATING PROTEIN) (PHS) (PTERIN CARBINOLAMINE DEHYDRATASE) (PCD) 0 0 0 0 0 0.0000 0.00 N/A
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hmm-sites1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2016 @@ +#HMM - Sites +# Tn-HMM +#Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit hmm transit-in1-rep1_smol.wig,transit-in1-rep2_smol.wig transit-in1_smol.prot hmm_smol +# +# Mean: 257.30 +# Median: 132.00 +# Normalization: TTR +# LOESS Correction: False +# pins (obs): 0.473974 +# pins (est): 0.633445 +# Run length (r): 5 +# State means: +# ES: 1.0101 GD: 3.9520 NE: 195.2002 GA: 976.0011 +# Self-Transition Prob: +# ES: -3.5286e-12 GD: -3.5286e-12 NE: -3.5286e-12 GA: -3.5286e-12 +# State Emission Parameters (theta): +# ES: 0.9900 GD: 0.2530 NE: 0.0051 GA: 0.0010 +# State Distributions:# ES: 24.47% GD: 4.70% NE: 70.82% GA: 0.00% +60 0 1.00e+00 5.77e-14 8.74e-16 1.74e-16 ES Rv0001_(dnaA) +72 0 1.00e+00 1.47e-14 4.52e-18 1.80e-19 ES Rv0001_(dnaA) +102 0 1.00e+00 3.77e-15 2.34e-20 1.86e-22 ES Rv0001_(dnaA) +188 0 1.00e+00 9.63e-16 1.21e-22 1.94e-25 ES Rv0001_(dnaA) +246 0 1.00e+00 2.46e-16 6.34e-25 1.64e-27 ES Rv0001_(dnaA) +333 0 1.00e+00 6.29e-17 1.05e-26 1.44e-27 ES Rv0001_(dnaA) +360 0 1.00e+00 1.61e-17 7.25e-27 1.43e-27 ES Rv0001_(dnaA) +426 0 1.00e+00 4.13e-18 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +448 0 1.00e+00 1.07e-18 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +471 0 1.00e+00 2.85e-19 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +483 0 1.00e+00 8.46e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +494 0 1.00e+00 3.35e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +504 0 1.00e+00 2.04e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +514 0 1.00e+00 1.71e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +525 0 1.00e+00 1.63e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +534 0 1.00e+00 1.62e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +601 0 1.00e+00 1.65e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +653 0 1.00e+00 1.80e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +670 0 1.00e+00 2.41e-20 7.23e-27 1.43e-27 ES Rv0001_(dnaA) +706 0 1.00e+00 4.78e-20 7.24e-27 1.43e-27 ES Rv0001_(dnaA) +741 0 1.00e+00 1.41e-19 7.60e-27 1.43e-27 ES Rv0001_(dnaA) +784 0 1.00e+00 5.04e-19 7.85e-26 1.43e-27 ES Rv0001_(dnaA) +794 0 1.00e+00 1.92e-18 1.38e-23 1.43e-27 ES Rv0001_(dnaA) +843 0 1.00e+00 7.48e-18 2.66e-21 1.43e-27 ES Rv0001_(dnaA) +989 0 1.00e+00 2.92e-17 5.14e-19 1.45e-27 ES Rv0001_(dnaA) +1092 0 1.00e+00 1.14e-16 9.94e-17 1.35e-26 ES Rv0001_(dnaA) +1104 0 1.00e+00 4.47e-16 1.92e-14 1.16e-23 ES Rv0001_(dnaA) +1267 0 1.00e+00 1.75e-15 3.71e-12 1.12e-20 ES Rv0001_(dnaA) +1278 0 1.00e+00 6.85e-15 7.17e-10 1.08e-17 ES Rv0001_(dnaA) +1345 0 1.00e+00 2.68e-14 1.39e-07 1.05e-14 ES Rv0001_(dnaA) +1423 0 1.00e+00 1.05e-13 2.68e-05 1.01e-11 ES Rv0001_(dnaA) +1522 110 3.38e-218 1.58e-24 1.00e+00 2.97e-06 NE Rv0001_(dnaA) +1552 41 4.33e-104 1.32e-27 1.00e+00 2.24e-06 NE +1635 199 0.00e+00 1.25e-47 1.00e+00 4.28e-06 NE +1779 0 4.55e-13 5.03e-16 1.00e+00 1.89e-06 NE +1782 0 4.57e-13 5.13e-16 1.00e+00 1.89e-06 NE +1788 0 4.57e-13 5.13e-16 1.00e+00 1.89e-06 NE +1847 0 4.57e-13 5.13e-16 1.00e+00 1.89e-06 NE +1858 342 0.00e+00 1.36e-58 1.00e+00 7.70e-06 NE +1921 19 4.42e-60 7.14e-14 1.00e+00 2.04e-06 NE +2001 0 9.95e-01 4.87e-13 5.17e-03 9.77e-09 ES +2012 0 1.00e+00 1.27e-13 2.68e-05 1.01e-11 ES +2063 0 1.00e+00 3.24e-14 1.39e-07 1.05e-14 ES Rv0002_(dnaN) +2104 0 1.00e+00 8.28e-15 7.17e-10 1.08e-17 ES Rv0002_(dnaN) +2141 0 1.00e+00 2.12e-15 3.71e-12 1.12e-20 ES Rv0002_(dnaN) +2232 0 1.00e+00 5.41e-16 1.92e-14 1.16e-23 ES Rv0002_(dnaN) +2290 0 1.00e+00 1.38e-16 9.94e-17 1.35e-26 ES Rv0002_(dnaN) +2315 0 1.00e+00 3.53e-17 5.14e-19 1.45e-27 ES Rv0002_(dnaN) +2318 0 1.00e+00 9.03e-18 2.66e-21 1.43e-27 ES Rv0002_(dnaN) +2333 0 1.00e+00 2.31e-18 1.38e-23 1.43e-27 ES Rv0002_(dnaN) +2344 0 1.00e+00 5.92e-19 7.85e-26 1.43e-27 ES Rv0002_(dnaN) +2363 0 1.00e+00 1.53e-19 7.60e-27 1.43e-27 ES Rv0002_(dnaN) +2387 0 1.00e+00 4.08e-20 7.24e-27 1.43e-27 ES Rv0002_(dnaN) +2404 0 1.00e+00 1.21e-20 7.23e-27 1.43e-27 ES Rv0002_(dnaN) +2427 0 1.00e+00 4.81e-21 7.23e-27 1.43e-27 ES Rv0002_(dnaN) +2479 0 1.00e+00 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5.91e-16 NE Rv0010c_(-) +13369 45 3.37e-112 2.78e-27 1.00e+00 2.21e-18 NE Rv0010c_(-) +13459 0 1.94e-15 8.41e-18 1.00e+00 1.84e-18 NE Rv0010c_(-) +13469 0 1.95e-15 8.58e-18 1.00e+00 1.84e-18 NE Rv0010c_(-) +13486 0 1.95e-15 8.58e-18 1.00e+00 1.87e-18 NE Rv0010c_(-) +13560 378 0.00e+00 7.50e-65 1.00e+00 9.51e-18 NE +13567 35 3.50e-92 2.36e-16 1.00e+00 2.49e-18 NE +13595 0 5.22e-04 2.47e-09 9.99e-01 2.79e-18 NE +13608 0 5.25e-04 2.52e-09 9.99e-01 6.24e-21 NE +13669 0 5.25e-04 2.53e-09 9.99e-01 2.19e-22 NE +13686 0 5.25e-04 2.53e-09 9.99e-01 9.07e-22 NE +13699 0 5.25e-04 2.53e-09 9.99e-01 4.46e-21 NE +13772 0 5.25e-04 2.53e-09 9.99e-01 2.79e-20 NE Rv0011c_(-) +13852 0 5.25e-04 2.53e-09 9.99e-01 5.59e-18 NE Rv0011c_(-) +13903 0 5.25e-04 2.52e-09 9.99e-01 5.29e-15 NE Rv0011c_(-) +14021 106 9.01e-216 1.58e-22 1.00e+00 7.91e-12 NE +14059 261 0.00e+00 2.57e-53 1.00e+00 1.50e-11 NE +14080 524 0.00e+00 4.10e-88 1.00e+00 4.41e-11 NE +14088 165 0.00e+00 1.98e-43 1.00e+00 1.01e-11 NE +14096 975 0.00e+00 3.00e-144 1.00e+00 2.82e-10 NE Rv0012_(-) +14177 304 0.00e+00 9.90e-61 1.00e+00 1.78e-11 NE Rv0012_(-) +14367 0 1.94e-15 8.41e-18 1.00e+00 5.11e-12 NE Rv0012_(-) +14421 0 1.95e-15 8.58e-18 1.00e+00 5.11e-12 NE Rv0012_(-) +14454 0 1.95e-15 8.58e-18 1.00e+00 5.11e-12 NE Rv0012_(-) +14621 397 0.00e+00 3.24e-67 1.00e+00 2.62e-11 NE Rv0012_(-) +14661 531 0.00e+00 5.52e-89 1.00e+00 4.54e-11 NE Rv0012_(-) +14665 679 0.00e+00 2.09e-107 1.00e+00 8.34e-11 NE Rv0012_(-) +14667 1 7.91e-24 1.15e-20 1.00e+00 5.14e-12 NE Rv0012_(-) +14677 8 8.20e-38 1.58e-21 1.00e+00 5.29e-12 NE Rv0012_(-) +14749 137 5.43e-296 1.16e-37 1.00e+00 8.99e-12 NE Rv0012_(-) +14758 431 0.00e+00 1.56e-76 1.00e+00 3.01e-11 NE Rv0012_(-) +14782 0 5.51e-20 3.65e-21 1.00e+00 5.12e-12 NE Rv0012_(-) +14813 238 0.00e+00 8.69e-51 1.00e+00 1.37e-11 NE Rv0012_(-) +14821 85 4.62e-192 2.01e-33 1.00e+00 7.32e-12 NE Rv0012_(-) +14872 175 0.00e+00 1.16e-41 1.00e+00 1.08e-11 NE Rv0012_(-) +14902 0 9.43e-01 5.12e-02 5.96e-03 3.28e-14 ES +14938 0 9.48e-01 5.22e-02 4.68e-05 6.21e-17 ES Rv0013_(trpG) +14968 0 9.48e-01 5.23e-02 5.65e-07 2.81e-19 ES Rv0013_(trpG) +15023 0 9.48e-01 5.23e-02 9.46e-09 3.13e-21 ES Rv0013_(trpG) +15084 0 9.48e-01 5.23e-02 1.81e-10 5.40e-23 ES Rv0013_(trpG) +15114 0 9.48e-01 5.23e-02 3.62e-12 1.32e-24 ES Rv0013_(trpG) +15221 0 9.48e-01 5.23e-02 7.30e-14 1.06e-24 ES Rv0013_(trpG) +15245 0 9.48e-01 5.23e-02 1.49e-15 4.07e-24 ES Rv0013_(trpG) +15269 0 9.48e-01 5.23e-02 4.21e-17 1.59e-23 ES Rv0013_(trpG) +15304 0 9.48e-01 5.23e-02 1.29e-17 6.23e-23 ES Rv0013_(trpG) +15327 0 9.48e-01 5.23e-02 1.35e-17 2.60e-22 ES Rv0013_(trpG) +15366 0 9.48e-01 5.23e-02 2.53e-16 1.69e-20 ES Rv0013_(trpG) +15464 0 9.48e-01 5.23e-02 4.65e-14 1.54e-17 ES Rv0013_(trpG) +15515 0 9.48e-01 5.23e-02 8.97e-12 1.49e-14 ES Rv0013_(trpG) +15576 0 9.48e-01 5.23e-02 1.73e-09 1.44e-11 ES Rv0013_(trpG) +15591 11 4.48e-20 1.00e+00 1.50e-04 6.51e-06 ES Rv0013_(trpG),Rv0014c_(pknB) +15657 0 9.55e-01 4.54e-02 2.91e-07 1.21e-08 ES 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Rv0026_(-) +30119 59 7.03e-138 1.56e-28 1.00e+00 1.73e-22 NE Rv0026_(-) +30195 0 5.19e-20 3.44e-21 1.00e+00 6.21e-23 NE Rv0026_(-) +30271 625 0.00e+00 5.54e-99 1.00e+00 5.99e-22 NE Rv0026_(-) +30449 418 0.00e+00 6.40e-75 1.00e+00 2.39e-22 NE Rv0026_(-) +30479 368 0.00e+00 1.07e-68 1.00e+00 1.47e-22 NE Rv0026_(-) +30679 244 0.00e+00 2.91e-53 1.00e+00 5.54e-23 NE Rv0026_(-) +30911 0 5.19e-20 3.44e-21 1.00e+00 8.94e-24 NE Rv0026_(-) +30968 184 0.00e+00 4.31e-44 1.00e+00 5.83e-24 NE Rv0026_(-) +31004 22 2.99e-66 1.36e-25 1.00e+00 1.73e-24 NE Rv0026_(-) +31066 349 0.00e+00 2.70e-66 1.00e+00 5.97e-24 NE Rv0026_(-) +31075 167 0.00e+00 1.12e-43 1.00e+00 3.11e-24 NE +31149 236 0.00e+00 2.88e-52 1.00e+00 4.68e-24 NE +31153 577 0.00e+00 1.04e-94 1.00e+00 2.56e-23 NE +31223 168 0.00e+00 8.39e-44 1.00e+00 4.47e-24 NE Rv0027_(-) +31261 0 5.19e-20 5.29e-21 1.00e+00 1.10e-24 NE Rv0027_(-) +31323 43 6.48e-106 2.37e-26 1.00e+00 7.00e-25 NE Rv0027_(-) +31381 0 1.00e-17 1.72e-19 1.00e+00 4.84e-25 NE Rv0027_(-) +31410 0 1.01e-17 1.75e-19 1.00e+00 4.57e-25 NE Rv0027_(-) +31589 111 1.77e-239 2.63e-33 1.00e+00 8.05e-25 NE Rv0028_(-) +31597 161 0.00e+00 6.24e-43 1.00e+00 1.11e-24 NE Rv0028_(-) +31684 0 1.94e-15 8.40e-18 1.00e+00 5.35e-25 NE Rv0028_(-) +31701 0 1.95e-15 8.57e-18 1.00e+00 4.59e-25 NE Rv0028_(-) +31810 0 1.95e-15 8.57e-18 1.00e+00 4.67e-25 NE Rv0028_(-) +31825 242 0.00e+00 6.35e-48 1.00e+00 1.58e-24 NE +31967 0 5.19e-20 3.45e-21 1.00e+00 5.89e-25 NE +31978 38 6.31e-96 6.42e-26 1.00e+00 5.81e-25 NE +32045 149 5.75e-320 2.03e-41 1.00e+00 9.85e-25 NE +32051 0 5.19e-20 3.44e-21 1.00e+00 5.24e-25 NE +32134 69 7.40e-158 8.88e-30 1.00e+00 6.58e-25 NE Rv0029_(-) +32163 107 4.63e-236 3.28e-36 1.00e+00 8.30e-25 NE Rv0029_(-) +32197 53 3.51e-128 1.73e-29 1.00e+00 6.85e-25 NE Rv0029_(-) +32253 204 0.00e+00 2.77e-48 1.00e+00 1.41e-24 NE Rv0029_(-) +32403 0 5.19e-20 3.44e-21 1.00e+00 6.12e-25 NE Rv0029_(-) +32434 149 1.12e-317 9.79e-40 1.00e+00 1.22e-24 NE Rv0029_(-) +32493 224 0.00e+00 8.98e-51 1.00e+00 2.26e-24 NE Rv0029_(-) +32518 0 5.19e-20 3.44e-21 1.00e+00 1.14e-24 NE Rv0029_(-) +32673 190 0.00e+00 7.72e-45 1.00e+00 5.57e-24 NE Rv0029_(-) +32755 44 3.35e-110 2.28e-28 1.00e+00 7.03e-24 NE Rv0029_(-) +32777 317 0.00e+00 2.39e-62 1.00e+00 7.24e-23 NE Rv0029_(-) +32886 432 0.00e+00 1.16e-76 1.00e+00 2.26e-22 NE Rv0029_(-) +32910 119 4.93e-260 1.05e-37 1.00e+00 8.73e-23 NE Rv0029_(-) +32995 0 5.19e-20 7.46e-21 1.00e+00 1.00e-22 NE Rv0029_(-) +33023 13 5.55e-46 1.82e-22 1.00e+00 3.55e-22 NE Rv0029_(-) +33045 103 4.54e-228 6.30e-34 1.00e+00 2.23e-21 NE Rv0029_(-) +33058 744 0.00e+00 1.69e-115 1.00e+00 1.09e-19 NE Rv0029_(-) +33113 177 0.00e+00 6.36e-45 1.00e+00 1.24e-20 NE Rv0029_(-) +33152 0 5.19e-20 3.44e-21 1.00e+00 8.07e-21 NE Rv0029_(-) +33217 1845 0.00e+00 7.76e-251 1.00e+00 3.64e-17 NE +33355 0 5.19e-20 3.44e-21 1.00e+00 1.85e-20 NE Rv0030_(-) +33359 124 9.82e-268 1.27e-36 1.00e+00 3.07e-20 NE Rv0030_(-) +33449 0 7.24e-11 2.05e-14 1.00e+00 1.88e-20 NE Rv0030_(-) +33490 0 7.28e-11 2.09e-14 1.00e+00 2.07e-20 NE Rv0030_(-) +33533 0 7.28e-11 2.09e-14 1.00e+00 3.05e-20 NE Rv0030_(-) +33560 0 7.28e-11 2.09e-14 1.00e+00 7.95e-20 NE +33650 0 7.28e-11 2.09e-14 1.00e+00 3.25e-19 NE Rv0031_(-) +33797 281 0.00e+00 2.17e-49 1.00e+00 6.16e-18 NE +33805 18 2.93e-58 5.05e-25 1.00e+00 4.16e-18 NE +33857 32 3.15e-86 9.17e-27 1.00e+00 1.46e-17 NE +33861 391 0.00e+00 1.48e-71 1.00e+00 2.60e-16 NE +33863 114 4.80e-250 3.04e-34 1.00e+00 1.46e-16 NE +33901 0 9.17e-02 1.34e-07 9.08e-01 1.95e-16 NE +33907 0 9.22e-02 1.36e-07 9.08e-01 7.80e-19 NE +33927 0 9.22e-02 1.36e-07 9.08e-01 3.80e-21 NE +33933 0 9.22e-02 1.36e-07 9.08e-01 1.98e-23 NE +33942 0 9.22e-02 1.36e-07 9.08e-01 5.11e-25 NE +34010 0 9.22e-02 1.36e-07 9.08e-01 6.01e-25 NE +34028 0 9.22e-02 1.36e-07 9.08e-01 4.13e-23 NE +34158 0 9.22e-02 1.36e-07 9.08e-01 2.41e-20 NE +34163 0 9.22e-02 1.36e-07 9.08e-01 2.04e-17 NE +34182 58 1.36e-117 8.91e-15 1.00e+00 2.68e-14 NE +34207 0 1.03e-17 2.56e-08 1.00e+00 2.10e-14 NE +34241 0 1.04e-17 2.56e-08 1.00e+00 2.09e-14 NE +34313 2 1.04e-21 1.44e-08 1.00e+00 2.11e-14 NE Rv0032_(bioF2) +34364 168 0.00e+00 3.03e-29 1.00e+00 4.17e-14 NE Rv0032_(bioF2) +34367 98 4.42e-218 4.33e-35 1.00e+00 3.13e-14 NE Rv0032_(bioF2) +34401 44 3.35e-110 2.28e-28 1.00e+00 2.51e-14 NE Rv0032_(bioF2) +34418 250 0.00e+00 5.21e-54 1.00e+00 5.85e-14 NE Rv0032_(bioF2) +34420 18 2.93e-58 5.04e-25 1.00e+00 2.25e-14 NE Rv0032_(bioF2) +34504 151 4.94e-324 1.41e-41 1.00e+00 3.89e-14 NE Rv0032_(bioF2) +34590 70 3.83e-162 1.32e-31 1.00e+00 2.79e-14 NE Rv0032_(bioF2) +34679 684 0.00e+00 4.98e-108 1.00e+00 3.50e-13 NE Rv0032_(bioF2) +34688 111 4.73e-244 1.04e-36 1.00e+00 3.32e-14 NE Rv0032_(bioF2) +34743 0 1.01e-17 1.71e-19 1.00e+00 2.11e-14 NE Rv0032_(bioF2) +34849 0 1.02e-17 1.75e-19 1.00e+00 2.14e-14 NE Rv0032_(bioF2) +34874 294 0.00e+00 4.36e-56 1.00e+00 7.71e-14 NE Rv0032_(bioF2) +34893 0 5.33e-19 2.12e-08 1.00e+00 2.54e-14 NE Rv0032_(bioF2) +34937 31 5.13e-81 2.99e-12 1.00e+00 4.24e-14 NE Rv0032_(bioF2) +34999 28 3.33e-75 2.76e-11 1.00e+00 1.01e-13 NE Rv0032_(bioF2) +35021 0 9.95e-01 2.05e-08 5.18e-03 1.68e-15 ES Rv0032_(bioF2) +35075 0 1.00e+00 2.09e-08 2.81e-05 8.01e-18 ES Rv0032_(bioF2) +35079 0 1.00e+00 2.09e-08 1.50e-06 4.07e-20 ES Rv0032_(bioF2) +35117 0 1.00e+00 2.09e-08 1.37e-06 2.10e-22 ES Rv0032_(bioF2) +35119 0 1.00e+00 2.09e-08 1.36e-06 1.09e-24 ES Rv0032_(bioF2) +35135 0 1.00e+00 2.09e-08 1.36e-06 7.06e-27 ES Rv0032_(bioF2) +35160 0 1.00e+00 2.09e-08 1.36e-06 1.50e-27 ES Rv0032_(bioF2) +35182 0 1.00e+00 2.09e-08 1.36e-06 1.60e-26 ES Rv0032_(bioF2) +35203 0 1.00e+00 2.09e-08 1.36e-06 9.69e-24 ES Rv0032_(bioF2) +35206 0 1.00e+00 2.09e-08 1.37e-06 8.52e-21 ES Rv0032_(bioF2) +35213 0 1.00e+00 2.09e-08 1.50e-06 8.07e-18 ES Rv0032_(bioF2) +35250 0 1.00e+00 2.09e-08 2.81e-05 7.77e-15 ES Rv0032_(bioF2) +35261 232 0.00e+00 5.26e-35 1.00e+00 3.76e-09 NE Rv0032_(bioF2) +35293 0 4.10e-06 7.59e-11 1.00e+00 1.45e-09 NE Rv0032_(bioF2) +35304 0 4.12e-06 7.70e-11 1.00e+00 1.53e-12 NE Rv0032_(bioF2) +35326 0 4.12e-06 7.70e-11 1.00e+00 7.63e-15 NE Rv0032_(bioF2) +35343 0 4.12e-06 7.70e-11 1.00e+00 1.22e-15 NE Rv0032_(bioF2) +35353 0 4.12e-06 7.70e-11 1.00e+00 2.44e-16 NE Rv0032_(bioF2) +35388 0 4.12e-06 7.70e-11 1.00e+00 4.96e-17 NE Rv0032_(bioF2) +35409 0 4.12e-06 7.70e-11 1.00e+00 1.07e-17 NE Rv0032_(bioF2) +35422 303 0.00e+00 1.46e-48 1.00e+00 1.02e-17 NE Rv0032_(bioF2) +35453 0 1.94e-15 8.40e-18 1.00e+00 1.39e-18 NE Rv0032_(bioF2) +35480 0 1.95e-15 8.57e-18 1.00e+00 3.02e-19 NE Rv0032_(bioF2) +35489 0 1.95e-15 8.57e-18 1.00e+00 8.48e-20 NE Rv0032_(bioF2) +35570 96 3.18e-207 9.45e-30 1.00e+00 6.14e-20 NE Rv0032_(bioF2) +35630 0 5.19e-20 3.44e-21 1.00e+00 3.27e-20 NE Rv0032_(bioF2) +35703 612 0.00e+00 2.30e-97 1.00e+00 3.73e-19 NE Rv0032_(bioF2) +35750 0 5.19e-20 3.44e-21 1.00e+00 2.96e-20 NE Rv0032_(bioF2) +35781 97 8.55e-214 2.91e-33 1.00e+00 4.23e-20 NE Rv0032_(bioF2) +35873 170 0.00e+00 4.73e-44 1.00e+00 5.68e-20 NE Rv0032_(bioF2) +35910 409 0.00e+00 8.44e-74 1.00e+00 1.53e-19 NE Rv0032_(bioF2) +36029 249 0.00e+00 6.94e-54 1.00e+00 7.96e-20 NE Rv0032_(bioF2) +36191 787 0.00e+00 7.53e-121 1.00e+00 7.37e-19 NE Rv0032_(bioF2) +36326 791 0.00e+00 2.39e-121 1.00e+00 7.51e-19 NE Rv0032_(bioF2) +36356 407 0.00e+00 1.50e-73 1.00e+00 1.54e-19 NE Rv0032_(bioF2) +36368 101 4.49e-224 1.83e-35 1.00e+00 4.32e-20 NE Rv0032_(bioF2) +36428 33 3.17e-88 5.36e-27 1.00e+00 3.21e-20 NE Rv0032_(bioF2) +36455 1829 0.00e+00 1.52e-250 1.00e+00 5.17e-17 NE Rv0032_(bioF2) +36515 147 5.69e-316 3.45e-41 1.00e+00 5.13e-20 NE Rv0032_(bioF2) +36519 455 0.00e+00 1.59e-79 1.00e+00 9.24e-20 NE Rv0032_(bioF2) +36606 0 5.19e-20 3.44e-21 1.00e+00 9.20e-21 NE Rv0032_(bioF2) +36677 242 0.00e+00 2.60e-51 1.00e+00 7.17e-21 NE Rv0033_(acpA) +36734 29 3.10e-80 1.70e-26 1.00e+00 1.51e-21 NE Rv0033_(acpA) +36802 289 0.00e+00 7.38e-59 1.00e+00 2.08e-21 NE Rv0033_(acpA) +37093 558 0.00e+00 2.40e-92 1.00e+00 4.71e-21 NE Rv0034_(-) +37125 250 0.00e+00 5.21e-54 1.00e+00 1.03e-21 NE Rv0034_(-) +37184 13 2.86e-48 3.61e-24 1.00e+00 1.70e-22 NE Rv0034_(-) +37214 124 5.05e-270 5.51e-38 1.00e+00 7.45e-23 NE Rv0034_(-) +37224 0 5.19e-20 3.44e-21 1.00e+00 2.05e-23 NE Rv0034_(-) +37353 362 0.00e+00 3.01e-66 1.00e+00 6.10e-23 NE Rv0035_(fadD34) +37361 737 0.00e+00 1.26e-114 1.00e+00 2.82e-22 NE Rv0035_(fadD34) +37404 50 3.46e-122 4.09e-29 1.00e+00 1.47e-23 NE Rv0035_(fadD34) +37512 0 5.19e-20 3.44e-21 1.00e+00 3.64e-24 NE Rv0035_(fadD34) +37626 315 0.00e+00 2.13e-60 1.00e+00 6.97e-24 NE Rv0035_(fadD34) +37666 257 0.00e+00 7.01e-55 1.00e+00 4.95e-24 NE Rv0035_(fadD34) +37674 0 5.19e-20 3.50e-21 1.00e+00 1.40e-24 NE Rv0035_(fadD34) +37752 28 6.00e-76 1.14e-24 1.00e+00 2.05e-24 NE Rv0035_(fadD34) +37775 414 0.00e+00 3.65e-74 1.00e+00 2.98e-23 NE Rv0035_(fadD34) +37784 822 0.00e+00 3.31e-125 1.00e+00 2.49e-22 NE Rv0035_(fadD34) +37829 42 3.32e-106 4.05e-28 1.00e+00 9.90e-24 NE Rv0035_(fadD34) +37944 502 0.00e+00 2.24e-85 1.00e+00 4.03e-23 NE Rv0035_(fadD34) +37977 12 2.84e-46 5.67e-24 1.00e+00 4.55e-24 NE Rv0035_(fadD34) +38003 247 0.00e+00 3.18e-53 1.00e+00 8.71e-24 NE Rv0035_(fadD34) +38047 22 2.99e-66 1.36e-25 1.00e+00 4.33e-24 NE Rv0035_(fadD34) +38065 88 4.20e-198 8.29e-34 1.00e+00 1.31e-23 NE Rv0035_(fadD34) +38096 66 3.75e-154 4.16e-31 1.00e+00 3.71e-23 NE Rv0035_(fadD34) +38133 394 0.00e+00 6.22e-72 1.00e+00 5.12e-22 NE Rv0035_(fadD34) +38249 67 3.77e-156 3.13e-31 1.00e+00 2.28e-22 NE Rv0035_(fadD34) +38363 7 2.77e-36 7.02e-23 1.00e+00 4.60e-22 NE Rv0035_(fadD34) +38444 623 0.00e+00 1.49e-99 1.00e+00 2.30e-20 NE Rv0035_(fadD34) +38517 773 0.00e+00 4.16e-119 1.00e+00 5.49e-20 NE Rv0035_(fadD34) +38588 11 2.83e-44 9.09e-24 1.00e+00 2.50e-21 NE Rv0035_(fadD34) +38846 422 0.00e+00 6.33e-75 1.00e+00 1.64e-20 NE Rv0035_(fadD34) +38902 0 5.19e-20 3.44e-21 1.00e+00 3.34e-21 NE Rv0035_(fadD34) +39125 73 7.56e-166 2.82e-30 1.00e+00 7.54e-21 NE Rv0036c_(-) +39290 892 0.00e+00 6.42e-134 1.00e+00 5.44e-19 NE Rv0036c_(-) 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5.19e-20 3.44e-21 1.00e+00 8.38e-21 NE Rv0038_(-) +41910 465 0.00e+00 4.55e-79 1.00e+00 1.64e-19 NE Rv0038_(-) +41915 473 0.00e+00 9.13e-82 1.00e+00 2.52e-19 NE +41986 11 2.83e-44 1.54e-20 1.00e+00 4.65e-20 NE +42060 0 1.00e-17 5.29e-19 1.00e+00 8.46e-20 NE Rv0039c_(-) +42083 0 1.01e-17 5.33e-19 1.00e+00 2.86e-19 NE Rv0039c_(-) +42208 166 0.00e+00 1.14e-39 1.00e+00 2.55e-18 NE Rv0039c_(-) +42276 1085 0.00e+00 6.09e-158 1.00e+00 3.31e-16 NE Rv0039c_(-) +42362 640 0.00e+00 1.49e-102 1.00e+00 5.52e-17 NE +42434 0 1.94e-15 1.39e-17 1.00e+00 4.03e-18 NE Rv0040c_(mtc28) +42473 0 1.95e-15 1.42e-17 1.00e+00 4.29e-18 NE Rv0040c_(mtc28) +42493 0 1.95e-15 1.42e-17 1.00e+00 5.61e-18 NE Rv0040c_(mtc28) +42644 15 2.09e-45 1.91e-19 1.00e+00 1.30e-17 NE Rv0040c_(mtc28) +42713 259 0.00e+00 3.26e-50 1.00e+00 1.25e-16 NE Rv0040c_(mtc28) +42806 0 5.20e-20 1.11e-20 1.00e+00 9.68e-17 NE Rv0040c_(mtc28) +42852 11 5.50e-42 4.81e-22 1.00e+00 3.81e-16 NE Rv0040c_(mtc28) +42854 23 3.03e-68 1.08e-23 1.00e+00 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2.68e-74 1.00e+00 1.74e-23 NE Rv0043c_(-) +47682 74 3.91e-170 4.21e-32 1.00e+00 6.06e-24 NE Rv0043c_(-) +47706 0 5.19e-20 3.44e-21 1.00e+00 9.02e-24 NE Rv0043c_(-) +47907 113 9.28e-246 2.96e-35 1.00e+00 5.34e-23 NE Rv0043c_(-) +48038 36 3.22e-94 2.44e-27 1.00e+00 1.28e-22 NE Rv0043c_(-) +48079 0 5.19e-20 3.45e-21 1.00e+00 4.44e-22 NE Rv0043c_(-) +48087 150 1.12e-319 7.37e-40 1.00e+00 3.91e-21 NE Rv0043c_(-) +48104 352 0.00e+00 1.05e-66 1.00e+00 2.81e-20 NE +48108 539 0.00e+00 5.56e-90 1.00e+00 1.09e-19 NE +48203 0 5.19e-20 3.44e-21 1.00e+00 1.48e-20 NE +48282 71 7.48e-162 5.01e-30 1.00e+00 3.91e-20 NE Rv0044c_(-) +48388 222 0.00e+00 1.59e-50 1.00e+00 2.07e-19 NE Rv0044c_(-) +48446 1313 0.00e+00 2.54e-186 1.00e+00 4.22e-17 NE Rv0044c_(-) +48450 394 0.00e+00 6.22e-72 1.00e+00 9.78e-19 NE Rv0044c_(-) +48466 176 0.00e+00 8.47e-45 1.00e+00 4.04e-19 NE Rv0044c_(-) +48481 36 3.22e-94 2.26e-27 1.00e+00 2.34e-19 NE Rv0044c_(-) +48489 92 4.29e-206 2.42e-34 1.00e+00 3.32e-19 NE Rv0044c_(-) +48514 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1.54e-16 1.00e+00 6.46e-25 NE Rv0092_(ctpA) +102816 0 1.95e-15 1.57e-16 1.00e+00 4.76e-25 NE Rv0092_(ctpA),Rv0093c_(-) +102889 0 1.95e-15 1.57e-16 1.00e+00 4.44e-25 NE Rv0093c_(-) +103041 35 2.32e-85 6.91e-21 1.00e+00 5.17e-25 NE Rv0093c_(-) +103052 0 1.52e-19 1.49e-16 1.00e+00 4.47e-25 NE Rv0093c_(-) +103106 1 1.54e-21 1.12e-16 1.00e+00 4.41e-25 NE Rv0093c_(-) +103214 23 1.14e-65 2.03e-19 1.00e+00 4.99e-25 NE Rv0093c_(-) +103405 0 5.19e-20 1.15e-16 1.00e+00 4.96e-25 NE Rv0093c_(-) +103534 201 0.00e+00 1.08e-41 1.00e+00 1.61e-24 NE Rv0093c_(-) +103630 369 0.00e+00 8.04e-69 1.00e+00 4.45e-24 NE Rv0093c_(-) +103809 78 3.99e-178 1.34e-32 1.00e+00 1.27e-24 NE Rv0094c_(-) +103957 41 3.30e-104 5.39e-28 1.00e+00 7.22e-25 NE Rv0094c_(-) +104034 39 3.27e-100 9.57e-28 1.00e+00 6.12e-25 NE Rv0094c_(-) +104050 118 4.90e-258 1.40e-37 1.00e+00 8.90e-25 NE Rv0094c_(-) +104092 101 4.49e-224 1.83e-35 1.00e+00 9.07e-25 NE Rv0094c_(-) +104113 201 0.00e+00 6.55e-48 1.00e+00 1.53e-24 NE Rv0094c_(-) +104157 119 4.93e-260 1.05e-37 1.00e+00 1.13e-24 NE Rv0094c_(-) +104424 185 0.00e+00 6.42e-46 1.00e+00 1.44e-24 NE Rv0094c_(-) +104464 42 3.32e-106 4.05e-28 1.00e+00 7.43e-25 NE Rv0094c_(-) +104472 42 3.32e-106 4.05e-28 1.00e+00 6.99e-25 NE Rv0094c_(-) +104491 323 0.00e+00 4.28e-63 1.00e+00 3.07e-24 NE Rv0094c_(-) +104562 186 0.00e+00 4.82e-46 1.00e+00 1.91e-24 NE Rv0094c_(-) +104587 78 3.99e-178 1.34e-32 1.00e+00 9.95e-25 NE Rv0094c_(-) +104611 137 5.40e-296 6.06e-40 1.00e+00 1.07e-24 NE Rv0094c_(-) +104806 51 3.47e-124 1.80e-24 1.00e+00 6.84e-25 NE Rv0095c_(-) +104952 0 6.64e-20 1.81e-13 1.00e+00 4.78e-25 NE Rv0095c_(-) +105089 6 6.85e-32 3.32e-14 1.00e+00 4.55e-25 NE Rv0095c_(-) +105096 0 3.75e-13 1.86e-13 1.00e+00 4.38e-25 NE Rv0095c_(-) +105112 0 3.77e-13 1.86e-13 1.00e+00 4.41e-25 NE Rv0095c_(-) +105146 0 3.77e-13 1.86e-13 1.00e+00 4.71e-25 NE Rv0095c_(-) +105177 0 3.77e-13 1.85e-13 1.00e+00 6.23e-25 NE Rv0095c_(-) +105188 532 0.00e+00 1.10e-79 1.00e+00 1.24e-23 NE Rv0095c_(-) +105198 187 0.00e+00 3.62e-46 1.00e+00 3.25e-24 NE Rv0095c_(-) +105208 0 1.00e-17 1.70e-19 1.00e+00 1.05e-24 NE Rv0095c_(-) +105249 0 1.01e-17 1.74e-19 1.00e+00 1.20e-24 NE +105259 251 0.00e+00 9.75e-51 1.00e+00 9.69e-24 NE +105288 137 5.40e-296 6.06e-40 1.00e+00 1.29e-23 NE +105319 0 5.19e-20 3.44e-21 1.00e+00 1.82e-23 NE +105329 380 0.00e+00 1.73e-68 1.00e+00 3.48e-22 NE Rv0096_(PPE1) +105331 258 0.00e+00 5.26e-55 1.00e+00 3.76e-22 NE Rv0096_(PPE1) +105416 1659 0.00e+00 2.18e-229 1.00e+00 2.10e-19 NE Rv0096_(PPE1) +105426 313 0.00e+00 7.51e-62 1.00e+00 8.29e-22 NE Rv0096_(PPE1) +105507 34 3.18e-90 4.02e-27 1.00e+00 1.29e-22 NE Rv0096_(PPE1) +105528 94 4.33e-210 1.37e-34 1.00e+00 4.02e-23 NE Rv0096_(PPE1) +105586 0 5.19e-20 5.64e-20 1.00e+00 7.79e-24 NE Rv0096_(PPE1) +105603 4 5.30e-28 1.83e-20 1.00e+00 2.08e-24 NE Rv0096_(PPE1) +105732 280 0.00e+00 7.62e-55 1.00e+00 3.30e-24 NE Rv0096_(PPE1) +105774 1 7.91e-24 1.04e-19 1.00e+00 8.14e-25 NE Rv0096_(PPE1) +105808 27 9.04e-76 6.19e-23 1.00e+00 5.82e-25 NE Rv0096_(PPE1) +105863 0 1.00e-17 3.10e-19 1.00e+00 4.65e-25 NE Rv0096_(PPE1) +105871 0 1.01e-17 3.13e-19 1.00e+00 4.63e-25 NE Rv0096_(PPE1) +105877 217 0.00e+00 3.00e-46 1.00e+00 1.36e-24 NE Rv0096_(PPE1) +105908 0 5.19e-20 3.15e-17 1.00e+00 5.58e-25 NE Rv0096_(PPE1) +105933 9 5.44e-38 2.43e-18 1.00e+00 4.78e-25 NE Rv0096_(PPE1) +105939 0 1.00e-17 3.23e-17 1.00e+00 4.42e-25 NE Rv0096_(PPE1) +105982 0 1.01e-17 3.23e-17 1.00e+00 4.41e-25 NE Rv0096_(PPE1) +106017 54 1.32e-125 6.01e-24 1.00e+00 5.84e-25 NE Rv0096_(PPE1) +106032 8 2.79e-38 2.21e-22 1.00e+00 5.27e-25 NE Rv0096_(PPE1) +106038 306 0.00e+00 1.54e-59 1.00e+00 2.42e-24 NE Rv0096_(PPE1) +106041 78 3.99e-178 1.34e-32 1.00e+00 9.79e-25 NE Rv0096_(PPE1) +106050 0 1.94e-15 8.40e-18 1.00e+00 5.43e-25 NE Rv0096_(PPE1) +106105 0 1.95e-15 8.57e-18 1.00e+00 5.21e-25 NE Rv0096_(PPE1) +106154 0 1.95e-15 8.57e-18 1.00e+00 7.73e-25 NE Rv0096_(PPE1) +106323 695 0.00e+00 2.62e-104 1.00e+00 3.67e-23 NE Rv0096_(PPE1) +106355 102 4.51e-226 1.38e-35 1.00e+00 3.29e-24 NE Rv0096_(PPE1) +106367 0 5.19e-20 3.44e-21 1.00e+00 1.10e-24 NE Rv0096_(PPE1) +106483 188 0.00e+00 1.37e-44 1.00e+00 2.33e-24 NE Rv0096_(PPE1) +106491 105 4.58e-232 5.82e-36 1.00e+00 2.54e-24 NE Rv0096_(PPE1) +106535 47 3.40e-116 9.68e-29 1.00e+00 4.26e-24 NE Rv0096_(PPE1) +106601 0 5.19e-20 3.44e-21 1.00e+00 1.15e-23 NE Rv0096_(PPE1) +106667 1437 0.00e+00 4.72e-200 1.00e+00 1.91e-20 NE Rv0096_(PPE1) +106688 0 5.19e-20 3.44e-21 1.00e+00 5.21e-23 NE Rv0096_(PPE1) +106742 668 0.00e+00 2.46e-104 1.00e+00 4.25e-22 NE Rv0097_(-) +106805 0 5.19e-20 3.44e-21 1.00e+00 2.21e-23 NE Rv0097_(-) +106807 62 7.14e-144 6.60e-29 1.00e+00 6.46e-24 NE Rv0097_(-) +106829 0 5.19e-20 3.44e-21 1.00e+00 1.58e-24 NE Rv0097_(-) +106836 42 6.44e-104 2.04e-26 1.00e+00 8.38e-25 NE Rv0097_(-) +106858 125 5.08e-272 1.92e-38 1.00e+00 9.58e-25 NE Rv0097_(-) +106906 0 5.19e-20 3.44e-21 1.00e+00 5.25e-25 NE Rv0097_(-) +106926 82 7.91e-184 2.14e-31 1.00e+00 6.94e-25 NE Rv0097_(-) +106929 0 5.19e-20 3.44e-21 1.00e+00 5.12e-25 NE Rv0097_(-) +106941 271 0.00e+00 6.39e-55 1.00e+00 1.92e-24 NE Rv0097_(-) +107024 0 5.19e-20 3.44e-21 1.00e+00 6.37e-25 NE Rv0097_(-) +107031 142 1.08e-303 7.28e-39 1.00e+00 1.00e-24 NE Rv0097_(-) +107033 0 1.00e-17 1.70e-19 1.00e+00 5.59e-25 NE Rv0097_(-) +107039 0 1.01e-17 1.74e-19 1.00e+00 6.47e-25 NE Rv0097_(-) +107106 593 0.00e+00 2.63e-93 1.00e+00 1.60e-23 NE Rv0097_(-) +107226 0 5.19e-20 3.44e-21 1.00e+00 1.41e-24 NE Rv0097_(-) +107245 147 1.10e-313 1.74e-39 1.00e+00 1.41e-24 NE Rv0097_(-) +107278 0 5.19e-20 4.72e-21 1.00e+00 7.13e-25 NE Rv0097_(-) +107288 17 5.67e-54 3.63e-23 1.00e+00 1.11e-24 NE Rv0097_(-) +107328 146 5.66e-314 9.21e-40 1.00e+00 5.48e-24 NE Rv0097_(-) +107436 7 2.77e-36 7.02e-23 1.00e+00 8.55e-24 NE Rv0097_(-) +107452 331 0.00e+00 3.30e-63 1.00e+00 1.33e-22 NE Rv0097_(-) +107456 1473 0.00e+00 3.09e-206 1.00e+00 2.85e-20 NE Rv0097_(-) +107466 110 4.70e-242 1.39e-36 1.00e+00 1.05e-22 NE Rv0097_(-) +107553 0 1.94e-15 1.15e-17 1.00e+00 1.92e-23 NE Rv0097_(-) +107592 0 1.95e-15 1.18e-17 1.00e+00 4.19e-24 NE Rv0097_(-) +107696 0 1.95e-15 1.18e-17 1.00e+00 1.20e-24 NE Rv0098_(-) +107717 17 2.12e-49 8.87e-20 1.00e+00 6.65e-25 NE Rv0098_(-) +107735 94 4.33e-210 6.34e-30 1.00e+00 8.59e-25 NE Rv0098_(-) +107765 0 5.19e-20 3.46e-21 1.00e+00 7.23e-25 NE Rv0098_(-) +107795 47 6.61e-114 4.88e-27 1.00e+00 1.86e-24 NE Rv0098_(-) +107797 0 5.19e-20 3.46e-21 1.00e+00 4.98e-24 NE Rv0098_(-) +107858 150 1.12e-319 7.38e-40 1.00e+00 4.12e-23 NE Rv0098_(-) +107927 97 4.40e-216 1.18e-34 1.00e+00 1.02e-22 NE Rv0098_(-) +107947 35 3.29e-92 7.51e-17 1.00e+00 2.59e-22 NE Rv0098_(-) +108059 4 5.45e-20 2.50e-10 1.00e+00 9.13e-22 NE Rv0098_(-) +108129 0 2.70e-06 8.37e-10 1.00e+00 4.19e-21 NE Rv0098_(-) +108149 0 2.72e-06 8.38e-10 1.00e+00 2.19e-23 NE Rv0098_(-) +108179 0 2.72e-06 8.38e-10 1.00e+00 1.04e-24 NE Rv0099_(fadD10) +108197 0 2.72e-06 8.38e-10 1.00e+00 2.94e-24 NE Rv0099_(fadD10) +108272 0 2.72e-06 8.38e-10 1.00e+00 1.30e-23 NE Rv0099_(fadD10) +108285 0 2.72e-06 8.38e-10 1.00e+00 7.94e-23 NE Rv0099_(fadD10) +108344 0 2.72e-06 8.38e-10 1.00e+00 1.58e-20 NE Rv0099_(fadD10) +108356 156 6.03e-318 3.14e-29 1.00e+00 2.84e-17 NE Rv0099_(fadD10) +108393 0 2.70e-06 5.00e-11 1.00e+00 1.49e-17 NE Rv0099_(fadD10) +108565 0 2.72e-06 5.10e-11 1.00e+00 1.68e-20 NE Rv0099_(fadD10) +108586 0 2.72e-06 5.11e-11 1.00e+00 1.11e-21 NE Rv0099_(fadD10) +108596 0 2.72e-06 5.11e-11 1.00e+00 1.07e-21 NE Rv0099_(fadD10) +108692 0 2.72e-06 5.11e-11 1.00e+00 1.20e-21 NE Rv0099_(fadD10) +108718 0 2.72e-06 5.11e-11 1.00e+00 2.13e-21 NE Rv0099_(fadD10) +108807 0 2.72e-06 5.10e-11 1.00e+00 2.23e-19 NE Rv0099_(fadD10) +108850 272 0.00e+00 6.97e-45 1.00e+00 6.42e-16 NE Rv0099_(fadD10) +108854 220 0.00e+00 2.83e-50 1.00e+00 5.19e-16 NE Rv0099_(fadD10) +108899 0 5.19e-20 8.51e-20 1.00e+00 2.10e-16 NE Rv0099_(fadD10) +108952 90 8.24e-200 5.44e-31 1.00e+00 3.05e-16 NE Rv0099_(fadD10) +108976 0 1.49e-08 5.33e-12 1.00e+00 2.11e-16 NE Rv0099_(fadD10) +109024 0 1.50e-08 5.44e-12 1.00e+00 2.16e-16 NE Rv0099_(fadD10) +109032 0 1.50e-08 5.44e-12 1.00e+00 2.42e-16 NE Rv0099_(fadD10) +109070 0 1.50e-08 5.44e-12 1.00e+00 3.67e-16 NE Rv0099_(fadD10) +109079 0 1.50e-08 5.44e-12 1.00e+00 9.98e-16 NE Rv0099_(fadD10) +109104 0 1.50e-08 5.44e-12 1.00e+00 5.15e-15 NE Rv0099_(fadD10) +109197 10 1.57e-28 3.09e-13 1.00e+00 1.03e-12 NE Rv0099_(fadD10) +109215 115 6.69e-252 2.11e-26 1.00e+00 1.72e-12 NE Rv0099_(fadD10) +109226 0 2.27e-10 5.87e-11 1.00e+00 1.30e-12 NE Rv0099_(fadD10)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/resampling-sites1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,1007 @@ +#Resampling +#Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit resampling transit-in1-rep2_smol.wig,transit-in1-rep1_smol.wig transit-co1-rep3_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep1_smol.wig transit-in1_smol.prot resampling-sites1_smol.txt +#Control Data: b'transit-in1-rep2_smol.wig,transit-in1-rep1_smol.wig' +#Experimental Data: b'transit-co1-rep3_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep1_smol.wig' +#Annotation path: b'transit-in1_smol.prot' +#Time: 64.01395511627197 +#Orf Name Desc Sites Mean Ctrl Mean Exp log2FC Sum Ctrl Sum Exp Delta Mean p-value Adj. p-value +Rv0001 dnaA chromosomal replication initiation protein 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0002 dnaN DNA polymerase III subunit beta 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0003 recF recombination protein F 35 22.6 27.7 0.30 1579.1 2907.67 5.1 0.66630 1.00000 +Rv0004 - hypothetical protein Rv0004 7 2.9 0.0 -1.97 40.8 0.00 -2.9 0.40810 1.00000 +Rv0005 gyrB DNA gyrase subunit B 42 11.3 3.6 -1.66 951.9 450.90 -7.8 0.40760 1.00000 +Rv0006 gyrA DNA gyrase subunit A 45 5.7 2.4 -1.22 511.8 330.34 -3.2 0.50960 1.00000 +Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 10 16.2 53.7 1.73 323.1 1610.25 37.5 0.47710 1.00000 +Rv0008c - POSSIBLE MEMBRANE PROTEIN 4 235.5 195.4 -0.27 1884.3 2345.17 -40.1 0.74730 1.00000 +Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 7 175.3 89.0 -0.98 2453.5 1869.11 -86.2 0.24570 1.00000 +Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 10 179.3 172.9 -0.05 3586.6 5186.87 -6.4 0.94490 1.00000 +Rv0011c - putative septation inhibitor protein 3 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 16 247.6 104.1 -1.25 7922.3 4996.36 -143.5 0.02820 1.00000 +Rv0013 trpG para-aminobenzoate synthase component II 15 0.7 2.9 2.03 21.1 129.04 2.2 0.90500 1.00000 +Rv0014c pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 24 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 16 23.6 12.4 -0.92 753.9 596.59 -11.1 0.70820 1.00000 +Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 37 19.4 12.9 -0.58 1436.0 1436.86 -6.5 0.43400 1.00000 +Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 27 50.3 50.0 -0.01 2718.6 4051.86 -0.3 0.98690 1.00000 +Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 25 15.5 12.4 -0.32 777.2 933.35 -3.1 0.72310 1.00000 +Rv0019c - hypothetical protein Rv0019c 13 178.0 36.5 -2.29 4628.3 1421.57 -141.6 0.00390 1.00000 +Rv0020c TB39.8 hypothetical protein Rv0020c 52 12.7 17.5 0.47 1317.9 2736.79 4.9 0.63120 1.00000 +Rv0021c - hypothetical protein Rv0021c 22 301.9 542.8 0.85 13281.7 35827.15 241.0 0.24080 1.00000 +Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 421.8 527.6 0.32 6749.0 12661.35 105.7 0.74770 1.00000 +Rv0023 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 12 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 12 225.5 222.8 -0.02 5410.9 8019.31 -2.7 0.97750 1.00000 +Rv0025 - hypothetical protein Rv0025 7 90.1 275.8 1.61 1261.4 5790.99 185.7 0.03210 1.00000 +Rv0026 - hypothetical protein Rv0026 14 154.7 166.7 0.11 4332.5 7000.58 11.9 0.83090 1.00000 +Rv0027 - hypothetical protein Rv0027 5 42.4 9.2 -2.21 423.7 137.74 -33.2 0.17520 1.00000 +Rv0028 - hypothetical protein Rv0028 5 54.5 68.7 0.33 544.9 1030.50 14.2 0.79850 1.00000 +Rv0029 - hypothetical protein Rv0029 18 163.6 682.7 2.06 5889.3 36863.16 519.1 0.23780 1.00000 +Rv0030 - hypothetical protein Rv0030 5 24.8 13.7 -0.86 247.9 205.46 -11.1 0.62930 1.00000 +Rv0031 - POSSIBLE REMNANT OF A TRANSPOSASE 1 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 57 152.1 215.1 0.50 17336.4 36778.48 63.0 0.33450 1.00000 +Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 186.7 250.2 0.42 1120.3 2251.39 63.4 0.58260 1.00000 +Rv0034 - hypothetical protein Rv0034 5 189.1 283.3 0.58 1891.1 4250.17 94.2 0.46040 1.00000 +Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 25 250.4 251.4 0.01 12521.7 18851.74 0.9 0.98980 1.00000 +Rv0036c - hypothetical protein Rv0036c 4 733.0 435.1 -0.75 5864.4 5221.17 -298.0 0.30590 1.00000 +Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 20 176.5 306.5 0.80 7061.9 18388.59 129.9 0.35200 1.00000 +Rv0038 - hypothetical protein Rv0038 7 293.8 416.8 0.50 4112.5 8752.08 123.0 0.49790 1.00000 +Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 4 312.6 426.7 0.45 2500.4 5120.20 114.1 0.70430 1.00000 +Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 9 46.0 130.8 1.51 827.9 3531.56 84.8 0.16480 1.00000 +Rv0041 leuS leucyl-tRNA synthetase 72 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 5 60.3 41.7 -0.53 603.0 625.40 -18.6 0.62690 1.00000 +Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 10 98.3 68.3 -0.52 1966.2 2050.19 -30.0 0.45820 1.00000 +Rv0044c - POSSIBLE OXIDOREDUCTASE 20 234.2 187.4 -0.32 9368.1 11246.32 -46.8 0.54380 1.00000 +Rv0045c - POSSIBLE HYDROLASE 7 309.7 278.0 -0.16 4336.3 5838.37 -31.7 0.73320 1.00000 +Rv0046c ino1 MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 16 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0047c - hypothetical protein Rv0047c 7 144.9 26.6 -2.44 2029.1 559.05 -118.3 0.07060 1.00000 +Rv0048c - POSSIBLE MEMBRANE PROTEIN 16 397.0 378.2 -0.07 12704.5 18153.75 -18.8 0.85380 1.00000 +Rv0049 - hypothetical protein Rv0049 8 99.5 237.3 1.25 1591.3 5694.83 137.8 0.22340 1.00000 +Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 37 23.9 37.3 0.64 1770.3 4144.46 13.4 0.46210 1.00000 +Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 34 122.5 101.2 -0.28 8331.8 10327.07 -21.3 0.65320 1.00000 +Rv0052 - hypothetical protein Rv0052 7 250.7 180.4 -0.47 3510.2 3788.37 -70.3 0.36220 1.00000 +Rv0053 rpsF 30S ribosomal protein S6 6 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0054 ssb single-strand DNA-binding protein 5 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0055 rpsR 30S ribosomal protein S18 4 12.0 0.0 -3.70 95.7 0.00 -12.0 0.40400 1.00000 +Rv0056 rplI 50S ribosomal protein L9 7 37.4 13.8 -1.43 523.0 290.30 -23.5 0.26930 1.00000 +Rv0057 - hypothetical protein Rv0057 15 73.0 108.1 0.57 2189.3 4865.78 35.2 0.45100 1.00000 +Rv0058 dnaB replicative DNA helicase 39 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0059 - hypothetical protein Rv0059 20 264.5 242.1 -0.13 10581.1 14527.75 -22.4 0.75390 1.00000 +Rv0060 - hypothetical protein Rv0060 23 13.1 11.0 -0.26 603.6 757.57 -2.1 0.94420 1.00000 +Rv0061 - hypothetical protein Rv0061 6 124.5 174.1 0.48 1494.5 3133.54 49.5 0.56640 1.00000 +Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 21 206.0 195.2 -0.08 8651.2 12294.90 -10.8 0.84180 1.00000 +Rv0063 - POSSIBLE OXIDOREDUCTASE 23 278.5 1108.1 1.99 12809.5 76460.41 829.7 0.33950 1.00000 +Rv0064 - hypothetical protein Rv0064 68 80.9 94.7 0.23 10998.2 19327.28 13.9 0.52430 1.00000 +Rv0065 - hypothetical protein Rv0065 8 93.7 171.3 0.87 1498.5 4111.50 77.7 0.51260 1.00000 +Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 38 0.3 0.0 -0.36 21.3 0.00 -0.3 0.39790 1.00000 +Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 12 38.2 48.4 0.34 917.1 1743.24 10.2 0.78360 1.00000 +Rv0068 - short chain dehydrogenase 12 153.3 277.6 0.86 3679.3 9993.78 124.3 0.45290 1.00000 +Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 12 291.7 17205.5 5.88 7001.0 619398.51 16913.8 0.34710 1.00000 +Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 18 127.1 130.7 0.04 4575.9 7060.30 3.6 0.95000 1.00000 +Rv0071 - POSSIBLE MATURASE 8 489.0 620.1 0.34 7824.7 14883.37 131.1 0.68360 1.00000 +Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 16 266.0 305.2 0.20 8510.7 14648.03 39.2 0.78400 1.00000 +Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 15 353.9 283.3 -0.32 10617.9 12750.65 -70.6 0.49580 1.00000 +Rv0074 - hypothetical protein Rv0074 19 84.6 100.2 0.24 3213.3 5708.72 15.6 0.63770 1.00000 +Rv0075 - PROBABLE AMINOTRANSFERASE 24 217.5 269.9 0.31 10441.0 19432.63 52.4 0.41730 1.00000 +Rv0076c - PROBABLE MEMBRANE PROTEIN 3 176.8 289.0 0.71 1060.8 2601.13 112.2 0.66220 1.00000 +Rv0077c - PROBABLE OXIDOREDUCTASE 14 185.8 152.0 -0.29 5203.7 6383.45 -33.9 0.59930 1.00000 +Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 8 19.7 11.3 -0.80 315.4 271.63 -8.4 0.59070 1.00000 +Rv0078A - hypothetical protein Rv0078A 10 183.9 117.9 -0.64 3677.3 3537.63 -65.9 0.28830 1.00000 +Rv0079 - hypothetical protein Rv0079 14 376.2 408.8 0.12 10534.3 17171.12 32.6 0.84060 1.00000 +Rv0080 - hypothetical protein Rv0080 4 454.5 600.3 0.40 3635.9 7203.03 145.8 0.75160 1.00000 +Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 5 374.7 346.7 -0.11 3747.1 5200.16 -28.0 0.84060 1.00000 +Rv0082 - PROBABLE OXIDOREDUCTASE 7 180.7 159.4 -0.18 2530.2 3347.28 -21.3 0.79810 1.00000 +Rv0083 - PROBABLE OXIDOREDUCTASE 23 202.6 144.4 -0.49 9320.3 9966.24 -58.2 0.19480 1.00000 +Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 9 183.6 107.6 -0.77 3304.0 2905.84 -75.9 0.22580 1.00000 +Rv0085 hycP POSSIBLE HYDROGENASE HYCP 4 73.7 73.2 -0.01 589.7 877.93 -0.6 0.99610 1.00000 +Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 15 33.6 46.9 0.48 1007.7 2112.52 13.4 0.57200 1.00000 +Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 25 35.9 25.0 -0.53 1796.3 1871.83 -11.0 0.62360 1.00000 +Rv0088 - hypothetical protein Rv0088 14 33.9 54.7 0.69 949.0 2297.30 20.8 0.50670 1.00000 +Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 10 111.8 134.6 0.27 2235.3 4037.95 22.8 0.74620 1.00000 +Rv0090 - POSSIBLE MEMBRANE PROTEIN 12 141.2 129.1 -0.13 3389.3 4648.10 -12.1 0.82580 1.00000 +Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 11 372.5 269.6 -0.47 8195.5 8897.25 -102.9 0.45060 1.00000 +Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 30 171.9 97.1 -0.82 10315.5 8736.65 -74.9 0.02900 1.00000 +Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 8 78.5 76.1 -0.05 1256.7 1825.51 -2.5 0.96640 1.00000 +Rv0094c - hypothetical protein Rv0094c 14 120.7 129.1 0.10 3379.2 5422.45 8.4 0.78210 1.00000 +Rv0095c - hypothetical protein Rv0095c 9 80.6 78.1 -0.05 1450.5 2107.86 -2.5 0.96600 1.00000 +Rv0096 PPE1 PPE FAMILY PROTEIN 34 185.2 203.8 0.14 12590.4 20782.86 18.6 0.78200 1.00000 +Rv0097 - POSSIBLE OXIDOREDUCTASE 26 162.2 96.4 -0.75 8433.6 7517.52 -65.8 0.23270 1.00000 +Rv0098 - hypothetical protein Rv0098 11 40.3 80.2 0.99 886.4 2646.90 39.9 0.31780 1.00000 +Rv0099 fadD10 acyl-CoA synthetase 26 33.2 44.7 0.43 1727.1 3488.09 11.5 0.57190 1.00000 +Rv0100 - hypothetical protein Rv0100 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0101 nrp PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0102 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0103c ctpB PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0104 - hypothetical protein Rv0104 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0105c rpmB 50S ribosomal protein L28 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0106 - hypothetical protein Rv0106 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0107c ctpI PROBABLE CATION-TRANSPORTER ATPASE I CTPI 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0108c - hypothetical protein Rv0108c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0109 PE_PGRS1 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0110 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0111 - POSSIBLE TRANSMEMBRANE ACYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0112 gca POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0113 gmhA PROBABLE SEDOHEPTULOSE-7-PHOSPHATE ISOMERASE GMHA (PHOSPHOHEPTOSE ISOMERASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0114 gmhB POSSIBLE D-ALPHA,BETA-D-HEPTOSE-1,7-BIPHOSPHATE PHOSPHATASE GMHB (D-GLYCERO-D-MANNO-HEPTOSE 7-PHOSPHATE KINASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0115 hddA POSSIBLE D-ALPHA-D-HEPTOSE-7-PHOSPHATE KINASE HDDA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0116c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0117 oxyS OXIDATIVE STRESS RESPONSE REGULATORY PROTEIN OXYS 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0118c oxcA putative oxalyl-CoA decarboxylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0119 fadD7 acyl-CoA synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0120c fusA2 elongation factor G 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0121c - hypothetical protein Rv0121c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0122 - hypothetical protein Rv0122 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0123 - hypothetical protein Rv0123 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0124 PE_PGRS2 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0125 pepA PROBABLE SERINE PROTEASE PEPA (SERINE PROTEINASE) (MTB32A) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0126 treS TREHALOSE SYNTHASE TRES 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0127 - hypothetical protein Rv0127 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0128 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0129c fbpC SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0130 - hypothetical protein Rv0130 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0131c fadE1 PROBABLE ACYL-CoA DEHYDROGENASE FADE1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0132c fgd2 PUTATIVE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0133 - PROBABLE ACETYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0134 ephF POSSIBLE EPOXIDE HYDROLASE EPHF (EPOXIDE HYDRATASE) (ARENE-OXIDE HYDRATASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0135c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0136 cyp138 PROBABLE CYTOCHROME P450 138 CYP138 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0137c msrA methionine sulfoxide reductase A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0138 - hypothetical protein Rv0138 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0139 - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0140 - hypothetical protein Rv0140 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0141c - hypothetical protein Rv0141c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0142 - hypothetical protein Rv0142 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0143c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0144 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0145 - hypothetical protein Rv0145 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0146 - hypothetical protein Rv0146 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0147 - PROBABLE ALDEHYDE DEHYDROGENASE (NAD+) DEPENDENT 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0148 - PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0149 - POSSIBLE QUINONE OXIDOREDUCTASE (NADPH:QUINONE OXIDOREDUCTASE) (ZETA-CRYSTALLIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0150c - hypothetical protein Rv0150c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0151c PE1 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0152c PE2 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0153c ptbB PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPB (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0154c fadE2 PROBABLE ACYL-CoA DEHYDROGENASE FADE2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0155 pntAa PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0156 pntAb PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0157 pntB PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT BETA) PNTB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0158 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0159c PE3 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0160c PE4 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0161 - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0162c adhE1 PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE (E SUBUNIT) ADHE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0163 - hypothetical protein Rv0163 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0164 TB18.5 hypothetical protein Rv0164 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0165c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0166 fadD5 acyl-CoA synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0167 yrbE1A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0168 yrbE1B CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1B 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0169 mce1A MCE-FAMILY PROTEIN MCE1A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0170 mce1B MCE-FAMILY PROTEIN MCE1B 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0171 mce1C MCE-FAMILY PROTEIN MCE1C 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0172 mce1D MCE-FAMILY PROTEIN MCE1D 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0173 lprK POSSIBLE MCE-FAMILY LIPOPROTEIN LPRK (MCE-FAMILY LIPOPROTEIN MCE1E) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0174 mce1F MCE-FAMILY PROTEIN MCE1F 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0175 - PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0176 - PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0177 - PROBABLE CONSERVED MCE ASSOCIATED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0178 - PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0179c lprO POSSIBLE LIPOPROTEIN LPRO 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0180c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0181c - hypothetical protein Rv0181c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0182c sigG RNA polymerase factor sigma-70 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0183 - POSSIBLE LYSOPHOSPHOLIPASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0184 - hypothetical protein Rv0184 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0185 - hypothetical protein Rv0185 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0186 bglS PROBABLE BETA-GLUCOSIDASE BGLS (GENTIOBIASE) (CELLOBIASE) (BETA-D-GLUCOSIDE GLUCOHYDROLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0187 - PROBABLE O-METHYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0188 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0189c ilvD dihydroxy-acid dehydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0190 - hypothetical protein Rv0190 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0191 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0192 - hypothetical protein Rv0192 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0192A - CONSERVED SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0193c - hypothetical protein Rv0193c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0194 - PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0195 - POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0196 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0197 - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0198c - PROBABLE ZINC METALLOPROTEASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0199 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0200 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0201c - hypothetical protein Rv0201c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0202c mmpL11 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL11 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0203 - POSSIBLE EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0204c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0205 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0206c mmpL3 POSSIBLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL3 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0207c - hypothetical protein Rv0207c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0208c trmB tRNA (guanine-N(7))-methyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0209 - hypothetical protein Rv0209 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0210 - hypothetical protein Rv0210 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0211 pckA phosphoenolpyruvate carboxykinase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0212c nadR POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0213c - POSSIBLE METHYLTRANSFERASE (METHYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0214 fadD4 acyl-CoA synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0215c fadE3 PROBABLE ACYL-CoA DEHYDROGENASE FADE3 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0216 - hypothetical protein Rv0216 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0217c lipW POSSIBLE ESTERASE LIPW 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0218 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0219 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0220 lipC PROBABLE ESTERASE LIPC 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0221 - hypothetical protein Rv0221 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0222 echA1 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0223c - PROBABLE ALDEHYDE DEHYDROGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0224c - POSSIBLE METHYLTRANSFERASE (METHYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0225 - POSSIBLE CONSERVED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0226c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0227c - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0228 - PROBABLE INTEGRAL MEMBRANE ACYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0229c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0230c php PROBABLE PHOSPHOTRIESTERASE PHP (PARATHION HYDROLASE) (PTE) (ARYLDIALKYLPHOSPHATASE) (PARAOXONASE) (A-ESTERASE) (ARYLTRIPHOSPHATASE) (PARAOXON HYDROLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0231 fadE4 PROBABLE ACYL-CoA DEHYDROGENASE FADE4 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0232 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0233 nrdB ribonucleotide-diphosphate reductase subunit beta 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0234c gabD1 succinic semialdehyde dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0235c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0236A - SMALL SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0236c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0237 lpqI PROBABLE CONSERVED LIPOPROTEIN LPQI 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0238 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0239 - hypothetical protein Rv0239 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0240 - hypothetical protein Rv0240 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0241c - hypothetical protein Rv0241c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0242c fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0243 fadA2 acetyl-CoA acetyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0244c fadE5 PROBABLE ACYL-CoA DEHYDROGENASE FADE5 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0245 - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0246 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0247c - fumarate reductase iron-sulfur subunit 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0248c sdhA succinate dehydrogenase flavoprotein subunit 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0249c - PROBABLE SUCCINATE DEHYDROGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0250c - hypothetical protein Rv0250c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0251c hsp HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0252 nirB PROBABLE NITRITE REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0253 nirD PROBABLE NITRITE REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0254c cobU PROBABLE BIFUNCTIONAL COBALAMIN BIOSYNTHESIS PROTEIN COBU: COBINAMIDE KINASE + COBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0255c cobQ1 cobyric acid synthase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0256c PPE2 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0257 - hypothetical protein Rv0257 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0258c - hypothetical protein Rv0258c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0259c - hypothetical protein Rv0259c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0260c - bifunctional uroporphyrinogen-III synthetase/response regulator domain protein 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0261c narK3 PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARK3 (NITRITE FACILITATOR) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0262c aac AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0263c - hypothetical protein Rv0263c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0264c - hypothetical protein Rv0264c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0265c - PROBABLE PERIPLASMIC IRON-TRANSPORT LIPOPROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0266c oplA PROBABLE 5-OXOPROLINASE OPLA (5-OXO-L-PROLINASE) (PYROGLUTAMASE) (5-OPASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0267 narU PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARU (NITRITE FACILITATOR) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0268c - hypothetical protein Rv0268c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0269c - hypothetical protein Rv0269c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0270 fadD2 acyl-CoA synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0271c fadE6 PROBABLE ACYL-CoA DEHYDROGENASE FADE6 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0272c - hypothetical protein Rv0272c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0273c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0274 - hypothetical protein Rv0274 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0275c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0276 - hypothetical protein Rv0276 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0277c - hypothetical protein Rv0277c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0278c PE_PGRS3 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0279c PE_PGRS4 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0280 PPE3 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0281 - hypothetical protein Rv0281 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0282 - hypothetical protein Rv0282 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0283 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0284 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0285 PE5 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0286 PPE4 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0287 esxG ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0288 esxH LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0289 - hypothetical protein Rv0289 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0290 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0291 mycP3 PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0292 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0293c - hypothetical protein Rv0293c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0294 tam PROBABLE TRANS-ACONITATE METHYLTRANSFERASE TAM 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0295c - hypothetical protein Rv0295c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0296c - PROBABLE SULFATASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0297 PE_PGRS5 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0298 - hypothetical protein Rv0298 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0299 - hypothetical protein Rv0299 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0300 - hypothetical protein Rv0300 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0301 - hypothetical protein Rv0301 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0302 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0303 - PROBABLE DEHYDROGENASE/REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0304c PPE5 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0305c PPE6 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0306 - PUTATIVE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0307c - hypothetical protein Rv0307c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0308 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0309 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0310c - hypothetical protein Rv0310c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0311 - hypothetical protein Rv0311 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0312 - CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0313 - hypothetical protein Rv0313 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0314c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0315 - POSSIBLE BETA-1,3-GLUCANASE PRECURSOR 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0316 - POSSIBLE MUCONOLACTONE ISOMERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0317c glpQ2 POSSIBLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ2 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0318c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0319 pcp pyrrolidone-carboxylate peptidase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0320 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0321 dcd deoxycytidine triphosphate deaminase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0322 udgA PROBABLE UDP-GLUCOSE 6-DEHYDROGENASE UDGA (UDP-GLC DEHYDROGENASE) (UDP-GLCDH) (UDPGDH) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0323c - hypothetical protein Rv0323c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0324 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0325 - hypothetical protein Rv0325 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0326 - hypothetical protein Rv0326 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0327c cyp135A1 POSSIBLE CYTOCHROME P450 135A1 CYP135A1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0328 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR/ACRR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0329c - hypothetical protein Rv0329c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0330c - hypothetical protein Rv0330c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0331 - POSSIBLE DEHYDROGENASE/REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0332 - hypothetical protein Rv0332 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0333 - hypothetical protein Rv0333 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0334 rmlA ALPHA-D-GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE RMLA (DTDP-GLUCOSE SYNTHASE) (DTDP-GLUCOSE PYROPHOSPHORYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0335c PE6 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0336 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0337c aspC aminotransferase AlaT 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0338c - PROBABLE IRON-SULFUR-BINDING REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0339c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0340 - hypothetical protein Rv0340 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0341 iniB ISONIAZID INDUCTIBLE GENE PROTEIN INIB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0342 iniA ISONIAZID INDUCTIBLE GENE PROTEIN INIA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0343 iniC ISONIAZID INDUCTIBLE GENE PROTEIN INIC 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0344c lpqJ PROBABLE LIPOPROTEIN LPQJ 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0345 - hypothetical protein Rv0345 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0346c ansP2 POSSIBLE L-ASPARAGINE PERMEASE ANSP2 (L-ASPARAGINE TRANSPORT PROTEIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0347 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0348 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0349 - hypothetical protein Rv0349 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0350 dnaK molecular chaperone DnaK 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0351 grpE PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0352 dnaJ1 PROBABLE CHAPERONE PROTEIN DNAJ1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0353 hspR PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0354c PPE7 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0355c PPE8 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0356c - hypothetical protein Rv0356c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0357c purA adenylosuccinate synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0358 - hypothetical protein Rv0358 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0359 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0360c - hypothetical protein Rv0360c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0361 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0362 mgtE POSSIBLE Mg2+ TRANSPORT TRANSMEMBRANE PROTEIN MGTE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0363c fba fructose-bisphosphate aldolase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0364 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0365c - hypothetical protein Rv0365c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0366c - hypothetical protein Rv0366c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0367c - hypothetical protein Rv0367c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0368c - hypothetical protein Rv0368c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0369c - POSSIBLE MEMBRANE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0370c - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0371c - hypothetical protein Rv0371c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0372c - hypothetical protein Rv0372c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0373c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (LARGE CHAIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0374c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (SMALL CHAIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0375c - PROBABLE CARBON MONOXYDE DEHYDROGENASE (MEDIUM CHAIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0376c - hypothetical protein Rv0376c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0377 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LYSR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0378 - CONSERVED HYPOTHETICAL GLYCINE RICH PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0379 secE2 POSSIBLE PROTEIN TRANSPORT PROTEIN SECE2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0380c - POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0381c - hypothetical protein Rv0381c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0382c pyrE orotate phosphoribosyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0383c - POSSIBLE CONSERVED SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0384c clpB PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0385 - hypothetical protein Rv0385 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0386 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0387c - hypothetical protein Rv0387c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0388c PPE9 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0389 purT phosphoribosylglycinamide formyltransferase 2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0390 - hypothetical protein Rv0390 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0391 metZ O-succinylhomoserine sulfhydrylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0392c ndhA PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0393 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0394c - POSSIBLE SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0395 - hypothetical protein Rv0395 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0396 - hypothetical protein Rv0396 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0397 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0398c - POSSIBLE SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0399c lpqK POSSIBLE CONSERVED LIPOPROTEIN LPQK 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0400c fadE7 ACYL-CoA DEHYDROGENASE FADE7 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0401 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0402c mmpL1 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0403c mmpS1 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0404 fadD30 acyl-CoA synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0405 pks6 PROBABLE MEMBRANE BOUND POLYKETIDE SYNTHASE PKS6 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0406c - BETA LACTAMASE LIKE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0407 fgd1 PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0408 pta phosphate acetyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0409 ackA acetate kinase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0410c pknG SERINE/THREONINE-PROTEIN KINASE PKNG (PROTEIN KINASE G) (STPK G) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0411c glnH PROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0412c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0413 mutT3 POSSIBLE MUTATOR PROTEIN MUTT3 (7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE) (8-OXO-DGTPASE) (DGTP PYROPHOSPHOHYDROLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0414c thiE thiamine-phosphate pyrophosphorylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0415 thiO POSSIBLE THIAMINE BIOSYNTHESIS OXIDOREDUCTASE THIO 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0416 thiS sulfur carrier protein ThiS 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0417 thiG thiazole synthase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0418 lpqL PROBABLE LIPOPROTEIN AMINOPEPTIDASE LPQL 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0419 lpqM POSSIBLE LIPOPROTEIN PEPTIDASE LPQM 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0420c - POSSIBLE TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0421c - hypothetical protein Rv0421c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0422c thiD phosphomethylpyrimidine kinase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0423c thiC thiamine biosynthesis protein ThiC 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0424c - hypothetical protein Rv0424c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0425c ctpH POSSIBLE METAL CATION TRANSPORTING P-TYPE ATPASE CTPH 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0426c - POSSIBLE TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0427c xthA PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III) (EXO III) (AP ENDONUCLEASE VI) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0428c - hypothetical protein Rv0428c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0429c def peptide deformylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0430 - hypothetical protein Rv0430 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0431 - PUTATIVE TUBERCULIN RELATED PEPTIDE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0432 sodC PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0433 - hypothetical protein Rv0433 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0434 - hypothetical protein Rv0434 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0435c - PUTATIVE CONSERVED ATPASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0436c pssA PROBABLE CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE PSSA (PS SYNTHASE) (PHOSPHATIDYLSERINE SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0437c psd phosphatidylserine decarboxylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0438c moeA2 PROBABLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0439c - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0440 groEL chaperonin GroEL 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0441c - hypothetical protein Rv0441c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0442c PPE10 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0443 - hypothetical protein Rv0443 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0444c - hypothetical protein Rv0444c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0445c sigK RNA polymerase sigma factor SigK 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0446c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0447c ufaA1 PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0448c - hypothetical protein Rv0448c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0449c - hypothetical protein Rv0449c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0450c mmpL4 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0451c mmpS4 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0452 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0453 PPE11 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0454 - hypothetical protein Rv0454 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0455c - hypothetical protein Rv0455c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0456A - hypothetical protein Rv0456A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0456c echA2 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0457c - PROBABLE PEPTIDASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0458 - PROBABLE ALDEHYDE DEHYDROGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0459 - hypothetical protein Rv0459 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0460 - CONSERVED HYDROPHOBIC PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0461 - PROBABLE TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0462 lpd dihydrolipoamide dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0463 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0464c - hypothetical protein Rv0464c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0465c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0466 - hypothetical protein Rv0466 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0467 icl isocitrate lyase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0468 fadB2 3-hydroxybutyryl-CoA dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0469 umaA POSSIBLE MYCOLIC ACID SYNTHASE UMAA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0470A - hypothetical protein Rv0470A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0470c pcaA MYCOLIC ACID SYNTHASE PCAA (CYCLOPROPANE SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0471c - hypothetical protein Rv0471c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0472c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0473 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0474 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0475 hbhA IRON-REGULATED HEPARIN BINDING HEMAGGLUTININ HBHA (ADHESIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0476 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0477 - POSSIBLE CONSERVED SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0478 deoC deoxyribose-phosphate aldolase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0479c - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0480c - POSSIBLE AMIDOHYDROLASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0481c - hypothetical protein Rv0481c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0482 murB UDP-N-acetylenolpyruvoylglucosamine reductase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0483 lprQ PROBABLE CONSERVED LIPOPROTEIN LPRQ 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0484c - PROBABLE SHORT-CHAIN TYPE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0485 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0486 - MANNOSYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0487 - hypothetical protein Rv0487 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0488 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0489 gpm1 phosphoglyceromutase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0490 senX3 PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0491 regX3 TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0492A - hypothetical protein Rv0492A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0492c - PROBABLE OXIDOREDUCTASE GMC-TYPE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0493c - hypothetical protein Rv0493c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0494 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0495c - hypothetical protein Rv0495c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0496 - hypothetical protein Rv0496 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0497 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0498 - hypothetical protein Rv0498 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0499 - hypothetical protein Rv0499 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0500 proC pyrroline-5-carboxylate reductase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0500A - hypothetical protein Rv0500A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0500B - hypothetical protein Rv0500B 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0501 galE2 POSSIBLE UDP-GLUCOSE 4-EPIMERASE GALE2 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0502 - hypothetical protein Rv0502 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0503c cmaA2 CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 2 CMAA2 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 2) (MYCOLIC ACID TRANS-CYCLOPROPANE SYNTHETASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0504c - hypothetical protein Rv0504c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0505c serB1 POSSIBLE PHOSPHOSERINE PHOSPHATASE SERB1 (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0506 mmpS2 PROBABLE CONSERVED MEMBRANE PROTEIN MMPS2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0507 mmpL2 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0508 - hypothetical protein Rv0508 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0509 hemA glutamyl-tRNA reductase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0510 hemC porphobilinogen deaminase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0511 hemD PROBABLE UROPORPHYRIN-III C-METHYLTRANSFERASE HEMD (UROPORPHYRINOGEN III METHYLASE) (UROGEN III METHYLASE) (SUMT) (UROGEN III METHYLASE) (UROM) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0512 hemB delta-aminolevulinic acid dehydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0513 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0514 - POSSIBLE TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0515 - CONSERVED 13E12 REPEAT FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0516c - hypothetical protein Rv0516c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0517 - POSSIBLE MEMBRANE ACYLTRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0518 - POSSIBLE EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0519c - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0520 - POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0521 - POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0522 gabP PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0523c - hypothetical protein Rv0523c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0524 hemL glutamate-1-semialdehyde aminotransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0525 - hypothetical protein Rv0525 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0526 - POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0527 ccdA POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0528 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0529 ccsA POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCSA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0530 - hypothetical protein Rv0530 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0531 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0532 PE_PGRS6 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0533c fabH 3-oxoacyl-(acyl carrier protein) synthase III 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0534c menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0535 pnp 5'-methylthioadenosine phosphorylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0536 galE3 PROBABLE UDP-GLUCOSE 4-EPIMERASE GALE3 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0537c - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0538 - POSSIBLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0539 - PROBABLE DOLICHYL-PHOSPHATE SUGAR SYNTHASE (DOLICHOL-PHOSPHATE SUGAR SYNTHETASE) (DOLICHOL-PHOSPHATE SUGAR TRANSFERASE) (SUGAR PHOSPHORYLDOLICHOL SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0540 - hypothetical protein Rv0540 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0541c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0542c menE O-succinylbenzoic acid--CoA ligase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0543c - hypothetical protein Rv0543c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0544c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0545c pitA PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER INTEGRAL MEMBRANE PROTEIN PITA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0546c - hypothetical protein Rv0546c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0547c - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0548c menB naphthoate synthase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0549c - hypothetical protein Rv0549c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0550c - hypothetical protein Rv0550c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0551c fadD8 acyl-CoA synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0552 - hypothetical protein Rv0552 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0553 menC O-succinylbenzoate synthase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0554 bpoC POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0555 menD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0556 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0557 pimB MANNOSYLTRANSFERASE PIMB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0558 ubiE ubiquinone/menaquinone biosynthesis methyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0559c - POSSIBLE CONSERVED SECRETED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0560c - POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0561c - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0562 grcC1 PROBABLE POLYPRENYL-DIPHOSPHATE SYNTHASE GRCC1 (POLYPRENYL PYROPHOSPHATE SYNTHETASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0563 htpX heat shock protein HtpX 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0564c gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0565c - PROBABLE MONOOXYGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0566c - nucleotide-binding protein 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0567 - PROBABLE METHYLTRANSFERASE/METHYLASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0568 cyp135B1 POSSIBLE CYTOCHROME P450 135B1 CYP135B1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0569 - hypothetical protein Rv0569 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0570 nrdZ PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0571c - hypothetical protein Rv0571c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0572c - hypothetical protein Rv0572c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0573c - nicotinate phosphoribosyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0574c - hypothetical protein Rv0574c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0575c - hypothetical protein Rv0575c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0576 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0577 TB27.3 hypothetical protein Rv0577 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0578c PE_PGRS7 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0579 - hypothetical protein Rv0579 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0580c - hypothetical protein Rv0580c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0581 - hypothetical protein Rv0581 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0582 - hypothetical protein Rv0582 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0583c lpqN PROBABLE CONSERVED LIPOPROTEIN LPQN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0584 - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0585c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0586 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (GNTR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0587 yrbE2A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0588 yrbE2B CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2B 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0589 mce2A MCE-FAMILY PROTEIN MCE2A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0590 mce2B MCE-FAMILY PROTEIN MCE2B 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0590A - MCE-FAMILY RELATED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0591 mce2C MCE-FAMILY PROTEIN MCE2C 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0592 mce2D MCE-FAMILY PROTEIN MCE2D 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0593 lprL POSSIBLE MCE-FAMILY LIPOPROTEIN LPRL (MCE-FAMILY LIPOPROTEIN MCE2E) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0594 mce2F MCE-FAMILY PROTEIN MCE2F 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0595c - hypothetical protein Rv0595c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0596c - hypothetical protein Rv0596c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0597c - hypothetical protein Rv0597c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0598c - hypothetical protein Rv0598c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0599c - hypothetical protein Rv0599c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0600c - PROBABLE TWO COMPONENT SENSOR KINASE -SECOND PART 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0601c - PROBABLE TWO COMPONENT SENSOR KINASE -FIRST PART 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0602c tcrA PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0603 - POSSIBLE EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0604 lpqO PROBABLE CONSERVED LIPOPROTEIN LPQO 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0605 - POSSIBLE RESOLVASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0606 - POSSIBLE TRANSPOSASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0607 - hypothetical protein Rv0607 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0608 - hypothetical protein Rv0608 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0609 - hypothetical protein Rv0609 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0609A - hypothetical protein Rv0609A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0610c - hypothetical protein Rv0610c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0611c - hypothetical protein Rv0611c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0612 - hypothetical protein Rv0612 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0613c - hypothetical protein Rv0613c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0614 - hypothetical protein Rv0614 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0615 - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0616c - hypothetical protein Rv0616c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0617 - hypothetical protein Rv0617 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0618 galTa PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0619 galTb PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0620 galK galactokinase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0621 - POSSIBLE MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0622 - POSSIBLE MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0623 - hypothetical protein Rv0623 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0624 - hypothetical protein Rv0624 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0625c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0626 - hypothetical protein Rv0626 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0627 - hypothetical protein Rv0627 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0628c - hypothetical protein Rv0628c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0629c recD PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0630c recB PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0631c recC PROBABLE EXONUCLEASE V (GAMMA CHAIN) RECC (EXODEOXYRIBONUCLEASE V GAMMA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0632c echA3 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0633c - POSSIBLE EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0634A - hypothetical protein Rv0634A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0634B rpmG 50S ribosomal protein L33 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0634c - POSSIBLE GLYOXALASE II (HYDROXYACYLGLUTATHIONE HYDROLASE) (GLX II) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0635 - hypothetical protein Rv0635 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0636 - hypothetical protein Rv0636 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0637 - hypothetical protein Rv0637 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0638 secE preprotein translocase subunit SecE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0639 nusG transcription antitermination protein NusG 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0640 rplK 50S ribosomal protein L11 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0641 rplA 50S ribosomal protein L1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0642c mmaA4 METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0643c mmaA3 METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0644c mmaA2 METHOXY MYCOLIC ACID SYNTHASE 2 MMAA2 (METHYL MYCOLIC ACID SYNTHASE 2) (MMA2) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0645c mmaA1 METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0646c lipG PROBABLE LIPASE/ESTERASE LIPG 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0647c - hypothetical protein Rv0647c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0648 - ALPHA-MANNOSIDASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0649 fabD2 POSSIBLE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE FABD2 (MCT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0650 - POSSIBLE SUGAR KINASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0651 rplJ 50S ribosomal protein L10 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0652 rplL 50S ribosomal protein L7/L12 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0653c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0654 - PROBABLE DIOXYGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0655 mkl POSSIBLE RIBONUCLEOTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER MKL 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0656c - hypothetical protein Rv0656c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0657c - hypothetical protein Rv0657c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0658c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0659c - hypothetical protein Rv0659c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0660c - hypothetical protein Rv0660c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0661c - hypothetical protein Rv0661c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0662c - hypothetical protein Rv0662c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0663 atsD POSSIBLE ARYLSULFATASE ATSD (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0664 - hypothetical protein Rv0664 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0665 - hypothetical protein Rv0665 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0666 - POSSIBLE MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0667 rpoB DNA-directed RNA polymerase subunit beta 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0668 rpoC DNA-directed RNA polymerase subunit beta' 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0669c - POSSIBLE HYDROLASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0670 end endonuclease IV 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0671 lpqP POSSIBLE CONSERVED LIPOPROTEIN LPQP 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0672 fadE8 PROBABLE ACYL-CoA DEHYDROGENASE FADE8 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0673 echA4 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0674 - hypothetical protein Rv0674 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0675 echA5 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0676c mmpL5 PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL5 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0677c mmpS5 POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0678 - hypothetical protein Rv0678 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0679c - CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0680c - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0681 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0682 rpsL 30S ribosomal protein S12 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0683 rpsG 30S ribosomal protein S7 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0684 fusA1 elongation factor G 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0685 tuf elongation factor Tu 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0686 - PROBABLE MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0687 fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0688 - PUTATIVE FERREDOXIN REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0689c - hypothetical protein Rv0689c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0690c - hypothetical protein Rv0690c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0691c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0692 - hypothetical protein Rv0692 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0693 pqqE PROBABLE COENZYME PQQ SYNTHESIS PROTEIN E PQQE (COENZYME PQQ SYNTHESIS PROTEIN III) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0694 lldD1 POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0695 - hypothetical protein Rv0695 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0696 - PROBABLE MEMBRANE SUGAR TRANSFERASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0697 - PROBABLE DEHYDROGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0698 - hypothetical protein Rv0698 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0699 - hypothetical protein Rv0699 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0700 rpsJ 30S ribosomal protein S10 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0701 rplC 50S ribosomal protein L3 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0702 rplD 50S ribosomal protein L4 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0703 rplW 50S ribosomal protein L23 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0704 rplB 50S ribosomal protein L2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0705 rpsS 30S ribosomal protein S19 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0706 rplV 50S ribosomal protein L22 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0707 rpsC 30S ribosomal protein S3 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0708 rplP 50S ribosomal protein L16 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0709 rpmC 50S ribosomal protein L29 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0710 rpsQ 30S ribosomal protein S17 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0711 atsA POSSIBLE ARYLSULFATASE ATSA (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0712 - hypothetical protein Rv0712 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0713 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0714 rplN 50S ribosomal protein L14 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0715 rplX 50S ribosomal protein L24 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0716 rplE 50S ribosomal protein L5 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0717 rpsN 30S ribosomal protein S14 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0718 rpsH 30S ribosomal protein S8 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0719 rplF 50S ribosomal protein L6 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0720 rplR 50S ribosomal protein L18 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0721 rpsE 30S ribosomal protein S5 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0722 rpmD 50S ribosomal protein L30 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0723 rplO 50S ribosomal protein L15 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0724 sppA POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0724A - hypothetical protein Rv0724A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0725c - hypothetical protein Rv0725c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0726c - hypothetical protein Rv0726c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0727c fucA L-fuculose-phosphate aldolase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0728c serA2 POSSIBLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA2 (PHOSPHOGLYCERATE DEHYDROGENASE) (PGDH) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0729 xylB POSSIBLE D-XYLULOSE KINASE XYLB (XYLULOKINASE) (XYLULOSE KINASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0730 - hypothetical protein Rv0730 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0731c - hypothetical protein Rv0731c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0732 secY preprotein translocase subunit SecY 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0733 adk adenylate kinase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0734 mapA methionine aminopeptidase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0735 sigL RNA polymerase sigma factor SigL 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0736 - PROBABLE CONSERVED MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0737 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0738 - hypothetical protein Rv0738 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0739 - hypothetical protein Rv0739 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0740 - hypothetical protein Rv0740 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0741 - PROBABLE TRANSPOSASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0742 PE_PGRS8 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0743c - hypothetical protein Rv0743c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0744c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0745 - hypothetical protein Rv0745 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0746 PE_PGRS9 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0747 PE_PGRS10 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0748 - hypothetical protein Rv0748 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0749 - hypothetical protein Rv0749 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0749A - hypothetical protein Rv0749A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0750 - hypothetical protein Rv0750 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0751c mmsB PROBABLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE MMSB (HIBADH) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0752c fadE9 PROBABLE ACYL-CoA DEHYDROGENASE FADE9 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0753c mmsA PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0754 PE_PGRS11 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0755A - PUTATIVE TRANSPOSASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0755c PPE12 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0756c - hypothetical protein Rv0756c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0757 phoP POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0758 phoR POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE ASSOCIATED PHOR 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0759c - hypothetical protein Rv0759c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0760c - hypothetical protein Rv0760c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0761c adhB POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0762c - hypothetical protein Rv0762c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0763c - POSSIBLE FERREDOXIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0764c cyp51 CYTOCHROME P450 51 CYP51 (CYPL1) (P450-L1A1) (STEROL 14-ALPHA DEMETHYLASE) (LANOSTEROL 14-ALPHA DEMETHYLASE) (P450-14DM) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0765c - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0766c cyp123 PROBABLE CYTOCHROME P450 123 CYP123 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0767c - hypothetical protein Rv0767c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0768 aldA PROBABLE ALDEHYDE DEHYDROGENASE NAD DEPENDENT ALDA (ALDEHYDE DEHYDROGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0769 - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0770 - PROBABLE DEHYDROGENASE/REDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0771 - POSSIBLE 4-CARBOXYMUCONOLACTONE DECARBOXYLASE (CMD) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0772 purD phosphoribosylamine--glycine ligase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0773c ggtA PROBABLE BIFUNCTIONAL ACYLASE GGTA: CEPHALOSPORIN ACYLASE (GL-7ACA ACYLASE) + GAMMA-GLUTAMYLTRANSPEPTIDASE (GGT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0774c - PROBABLE CONSERVED EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0775 - hypothetical protein Rv0775 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0776c - hypothetical protein Rv0776c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0777 purB adenylosuccinate lyase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0778 cyp126 POSSIBLE CYTOCHROME P450 126 CYP126 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0779c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0780 hemH phosphoribosylaminoimidazole-succinocarboxamide synthase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0781 ptrBa PROBABLE PROTEASE II PTRBA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0782 ptrBb PROBABLE PROTEASE II PTRBB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0783c emrB POSSIBLE MULTIDRUG RESISTANCE INTEGRAL MEMBRANE EFFLUX PROTEIN EMRB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0784 - hypothetical protein Rv0784 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0785 - putative FAD-binding dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0786c - hypothetical protein Rv0786c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0787 - hypothetical protein Rv0787 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0787A - phosphoribosylformylglycinamidine synthase subunit PurS 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0788 purQ phosphoribosylformylglycinamidine synthase subunit I 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0789c - hypothetical protein Rv0789c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0790c - hypothetical protein Rv0790c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0791c - hypothetical protein Rv0791c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0792c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0793 - hypothetical protein Rv0793 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0794c - PROBABLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0795 - PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0796 - PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0797 - IS1547 transposase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0798c cfp29 29 KDa ANTIGEN CFP29 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0799c - hypothetical protein Rv0799c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0800 pepC putative aminopeptidase 2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0801 - hypothetical protein Rv0801 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0802c - hypothetical protein Rv0802c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0803 purL phosphoribosylformylglycinamidine synthase II 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0804 - hypothetical protein Rv0804 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0805 - hypothetical protein Rv0805 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0806c cpsY POSSIBLE UDP-GLUCOSE-4-EPIMERASE CPSY (GALACTOWALDENASE) (UDP-GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE-4-EPIMERASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0807 - hypothetical protein Rv0807 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0808 purF amidophosphoribosyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0809 purM phosphoribosylaminoimidazole synthetase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0810c - hypothetical protein Rv0810c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0811c - hypothetical protein Rv0811c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0812 - 4-amino-4-deoxychorismate lyase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0813c - hypothetical protein Rv0813c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0814c sseC2 CONSERVED HYPOTHETICAL PROTEIN SSEC2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0815c cysA2 PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0816c thiX PROBABLE THIOREDOXIN THIX 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0817c - PROBABLE CONSERVED EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0818 - TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0819 - hypothetical protein Rv0819 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0820 phoT PROBABLE PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PHOT 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0821c phoY2 PROBABLE PHOSPHATE-TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PHOY2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0822c - hypothetical protein Rv0822c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0823c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0824c desA1 PROBABLE ACYL- 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0825c - hypothetical protein Rv0825c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0826 - hypothetical protein Rv0826 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0827c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0828c - POSSIBLE DEAMINASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0829 - POSSIBLE TRANSPOSASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0830 - hypothetical protein Rv0830 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0831c - hypothetical protein Rv0831c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0832 PE_PGRS12 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0833 PE_PGRS13 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0834c PE_PGRS14 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0835 lpqQ POSSIBLE LIPOPROTEIN LPQQ 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0836c - hypothetical protein Rv0836c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0837c - hypothetical protein Rv0837c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0838 lpqR PROBABLE CONSERVED LIPOPROTEIN LPQR 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0839 - hypothetical protein Rv0839 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0840c pip PROBABLE PROLINE IMINOPEPTIDASE PIP (PROLYL AMINOPEPTIDASE) (PAP) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0841 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0842 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0843 - PROBABLE DEHYDROGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0844c narL POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0845 - POSSIBLE TWO COMPONENT SENSOR KINASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0846c - PROBABLE OXIDASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0847 lpqS PROBABLE LIPOPROTEIN LPQS 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0848 cysK2 POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0849 - PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0850 - PUTATIVE TRANSPOSASE (FRAGMENT) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0851c - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0852 fadD16 POSSIBLE FATTY-ACID-CoA LIGASE FADD16 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0853c pdc PROBABLE PYRUVATE OR INDOLE-3-PYRUVATE DECARBOXYLASE PDC 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0854 - hypothetical protein Rv0854 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0855 far PROBABLE FATTY-ACID-CoA RACEMASE FAR 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0856 - hypothetical protein Rv0856 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0857 - hypothetical protein Rv0857 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0858c - aminotransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0859 fadA acetyl-CoA acetyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0860 fadB PROBABLE FATTY OXIDATION PROTEIN FADB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0861c ercc3 PROBABLE DNA HELICASE ERCC3 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0862c - hypothetical protein Rv0862c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0863 - hypothetical protein Rv0863 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0864 moaC molybdenum cofactor biosynthesis protein C 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0865 mog PROBABLE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0866 moaE2 PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E2 MOAE2 (MOLYBDOPTERIN CONVERTING FACTOR LARGE SUBUNIT) (MOLYBDOPTERIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0867c rpfA POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0868c moaD2 PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D 2 MOAD2 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0869c moaA molybdenum cofactor biosynthesis protein A 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0870c - hypothetical protein Rv0870c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0871 cspB PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0872c PE_PGRS15 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0873 fadE10 PROBABLE ACYL-CoA DEHYDROGENASE FADE10 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0874c - hypothetical protein Rv0874c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0875c - POSSIBLE CONSERVED EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0876c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0877 - hypothetical protein Rv0877 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0878c PPE13 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0879c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0880 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY MARR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0881 - POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0882 - PROBABLE TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0883c - hypothetical protein Rv0883c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0884c serC phosphoserine aminotransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0885 - hypothetical protein Rv0885 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0886 fprB PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0887c - hypothetical protein Rv0887c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0888 - PROBABLE EXPORTED PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0889c citA citrate synthase 2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0890c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0891c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0892 - PROBABLE MONOOXYGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0893c - hypothetical protein Rv0893c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0894 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY LUXR-FAMILY) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0895 - hypothetical protein Rv0895 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0896 gltA type II citrate synthase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0897c - PROBABLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0898c - hypothetical protein Rv0898c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0899 ompA OUTER MEMBRANE PROTEIN A OMPA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0900 - POSSIBLE MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0901 - POSSIBLE CONSERVED EXPORTED OR MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0902c prrB TWO COMPONENT SENSOR HISTIDINE KINASE PRRB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0903c prrA TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0904c accD3 PUTATIVE ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE (SUBUNIT BETA) ACCD3 (ACCASE BETA CHAIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0905 echA6 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0906 - hypothetical protein Rv0906 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0907 - hypothetical protein Rv0907 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0908 ctpE PROBABLE METAL CATION TRANSPORTER ATPASE P-TYPE CTPE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0909 - hypothetical protein Rv0909 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0910 - hypothetical protein Rv0910 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0911 - hypothetical protein Rv0911 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0912 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0913c - POSSIBLE DIOXYGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0914c - acetyl-CoA acetyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0915c PPE14 PPE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0916c PE7 PE FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0917 betP POSSIBLE GLYCINE BETAINE TRANSPORT INTEGRAL MEMBRANE PROTEIN BETP 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0918 - hypothetical protein Rv0918 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0919 - hypothetical protein Rv0919 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0920c - PROBABLE TRANSPOSASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0921 - POSSIBLE RESOLVASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0922 - POSSIBLE TRANSPOSASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0923c - hypothetical protein Rv0923c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0924c mntH manganese transport protein MntH 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0925c - hypothetical protein Rv0925c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0926c - hypothetical protein Rv0926c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0927c - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0928 pstS3 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS3 (PBP-3) (PSTS3) (PHOS1) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0929 pstC2 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0930 pstA1 PROBABLE PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0931c pknD TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0932c pstS2 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS2 (PBP-2) (PSTS2) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0933 pstB PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PSTB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0934 pstS1 PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0935 pstC1 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0936 pstA2 PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0937c - hypothetical protein Rv0937c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0938 - ATP-dependent DNA ligase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0939 - POSSIBLE BIFUNCTIONAL ENZYME: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD ISOMERASE) + CYCLASE/DEHYDRASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0940c - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0941c - hypothetical protein Rv0941c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0942 - hypothetical protein Rv0942 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0943c - PROBABLE MONOOXYGENASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0944 - POSSIBLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0945 - short chain dehydrogenase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0946c pgi glucose-6-phosphate isomerase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0948c - hypothetical protein Rv0948c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0949 uvrD1 PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0950c - hypothetical protein Rv0950c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0951 sucC succinyl-CoA synthetase subunit beta 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0952 sucD succinyl-CoA synthetase subunit alpha 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0953c - POSSIBLE OXIDOREDUCTASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0954 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0955 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0956 purN phosphoribosylglycinamide formyltransferase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0957 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0958 - POSSIBLE MAGNESIUM CHELATASE 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0959 - hypothetical protein Rv0959 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0960 - hypothetical protein Rv0960 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0961 - PROBABLE INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0962c lprP POSSIBLE LIPOPROTEIN LPRP 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0963c - hypothetical protein Rv0963c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0964c - hypothetical protein Rv0964c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0965c - hypothetical protein Rv0965c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0966c - hypothetical protein Rv0966c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0967 - hypothetical protein Rv0967 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0968 - hypothetical protein Rv0968 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0969 ctpV PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE CTPV 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0970 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0971c echA7 enoyl-CoA hydratase 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0972c fadE12 PROBABLE ACYL-CoA DEHYDROGENASE FADE12 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0973c accA2 PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA2: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0974c accD2 PROBABLE ACETYL-/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD2 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0975c fadE13 PROBABLE ACYL-CoA DEHYDROGENASE FADE13 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0976c - hypothetical protein Rv0976c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0977 PE_PGRS16 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0978c PE_PGRS17 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0979A rpmF 50S ribosomal protein L32 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0979c - hypothetical protein Rv0979c 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0980c PE_PGRS18 PE-PGRS FAMILY PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0981 mprA MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0982 mprB PROBABLE TWO COMPONENT SENSOR KINASE MPRB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0983 pepD PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 +Rv0984 moaB2 POSSIBLE PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2 (PHS) (4-ALPHA-HYDROXY-TETRAHYDROPTERIN DEHYDRATASE) (PTERIN-4-A-CARBINOLAMINE DEHYDRATASE) (PHENYLALANINE HYDROXYLASE-STIMULATING PROTEIN) (PHS) (PTERIN CARBINOLAMINE DEHYDRATASE) (PCD) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tn5gaps-sites1.txt Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,512 @@ +#Tn5 Gaps +#Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit tn5gaps transit-in-tn5_smoll.wig,transit-in2-tn5_smol.wig transit_tn5_smol.prot tn5gaps-sites1_smol.txt +#Data: b'transit-in-tn5_smoll.wig,transit-in2-tn5_smol.wig' +#Annotation path: b'transit_tn5_smol.prot' +#Time: 1.1462020874023438 +#Essential gene count: 1 +#Minimum reads: 1 +#Replicate combination method: Sum +#Minimum significant run length: 216 +#Expected run length: 6.88000 +#Expected max run length: 52.61348258987123 +#Orf Name Desc k n r ovr lenovr pval padj call +BW25113_0001 thrL - 14 63 10 8 8 1.00000 1.00000 Non-essential +BW25113_0002 thrA bifunctional: aspartokinase I (N-terminal)%3B homoserine dehydrogenase I (C-terminal) 356 2460 48 48 48 0.72170 1.00000 Non-essential +BW25113_0003 thrB - 160 930 32 32 32 1.00000 1.00000 Non-essential +BW25113_0004 thrC - 194 1284 54 54 54 0.38483 1.00000 Non-essential +BW25113_0005 yaaX - 48 294 32 32 32 1.00000 1.00000 Non-essential +BW25113_0006 yaaA - 115 774 41 41 41 0.98087 1.00000 Non-essential +BW25113_0007 yaaJ inner membrane transport protein 214 1428 46 46 46 0.82900 1.00000 Non-essential +BW25113_0008 talB - 181 951 54 54 54 0.38483 1.00000 Non-essential +BW25113_0009 mog putative molybdochetalase in molybdopterine biosynthesis 95 585 45 24 24 1.00000 1.00000 Non-essential +BW25113_0010 satP - 108 564 37 37 37 0.99947 1.00000 Non-essential +BW25113_0011 yaaW - 113 711 34 34 34 1.00000 1.00000 Non-essential +BW25113_0013 yaaI - 77 402 26 26 26 1.00000 1.00000 Non-essential +BW25113_0014 dnaK chaperone Hsp70%3B DNA biosynthesis%3B autoregulated heat shock proteins 34 1914 835 216 216 0.00000 0.00000 Essential +BW25113_0015 dnaJ chaperone with DnaK%3B heat shock protein 169 1128 67 67 67 0.05791 1.00000 Non-essential +BW25113_0016 insL1 - 235 1110 36 36 36 0.99986 1.00000 Non-essential +BW25113_0018 mokC regulatory peptide whose translation enables hokC (gef) expression%3B completely contained in another CDS 68 207 12 12 12 1.00000 1.00000 Non-essential +BW25113_0019 nhaA Na+/H antiporter%2C pH dependent 171 1164 36 36 36 0.99986 1.00000 Non-essential +BW25113_0020 nhaR - 116 903 38 38 38 0.99837 1.00000 Non-essential +BW25113_0021 insB1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0022 insA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0023 rpsT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0024 yaaY - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0025 ribF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0026 ileS isoleucine tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0027 lspA prolipoprotein signal peptidase (SPase II) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0028 fkpB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0029 ispH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0030 rihC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0031 dapB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0032 carA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0033 carB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0034 caiF transcriptional regulator of cai operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0035 caiE possible synthesis of cofactor for carnitine racemase and dehydratase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0036 caiD carnitine racemase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0037 caiC probable crotonobetaine/carnitine-CoA ligase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0038 caiB l-carnitine dehydratase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0039 caiA probable carnitine operon oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0040 caiT probable carnitine transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0041 fixA probable flavoprotein subunit%2C carnitine metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0042 fixB probable flavoprotein subunit%2C carnitine metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0043 fixC flavoprotein%3B electron transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0044 fixX putative ferredoxin 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0045 yaaU putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0046 kefF putative NAD(P)H oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0047 kefC K+ efflux antiporter%2C glutathione-regulated 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0048 folA dihydrofolate reductase type I%3B trimethoprim resistance 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0049 apaH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0050 apaG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0051 rsmA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0052 pdxA pyridoxine biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0053 surA survival protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0054 lptD organic solvent tolerance 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0055 djlA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0058 rluA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0059 rapA probable ATP-dependent RNA helicase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0060 polB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0064 araC transcriptional regulator for ara operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0065 yabI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0066 thiQ putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0067 thiP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0068 thiB thiamin-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0069 sgrR putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0070 setA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0071 leuD isopropylmalate isomerase subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0072 leuC 3-isopropylmalate isomerase (dehydratase) subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0073 leuB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0074 leuA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0075 leuL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0076 leuO probable transcriptional activator for leuABCD operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0077 ilvI acetolactate synthase III%2C valine sensitive%2C large subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0078 ilvH acetolactate synthase III%2C valine sensitive%2C small subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0080 cra transcriptional repressor of fru operon and others 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0081 mraZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0082 rsmH putative apolipoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0083 ftsL cell division protein%3B ingrowth of wall at septum 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0084 ftsI septum formation%3B penicillin-binding protein 3%3B peptidoglycan synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0085 murE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0086 murF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0087 mraY phospho-N-acetylmuramoyl-pentapeptide transferase? 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0088 murD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0089 ftsW cell division%3B membrane protein involved in shape determination 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0090 murG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0091 murC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0092 ddlB D-alanine-D-alanine ligase B%2C affects cell division 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0093 ftsQ cell division protein%3B ingrowth of wall at septum 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0094 ftsA ATP-binding cell division protein%2C septation process%2C complexes with FtsZ%2C associated with junctions of inner and outer membranes 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0095 ftsZ cell division%3B forms circumferential ring%3B tubulin-like GTP-binding protein and GTPase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0096 lpxC UDP-3-O-acyl N-acetylglucosamine deacetylase%3B lipid A biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0097 secM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0098 secA preprotein translocase%3B secretion protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0099 mutT 7%2C8-dihydro-8-oxoguanine-triphosphatase%2C prefers dGTP%2C causes AT-GC transversions 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0101 yacG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0102 zapD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0103 coaE putative DNA repair protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0104 guaC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0106 hofC putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0107 hofB putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0108 ppdD prelipin peptidase dependent protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0109 nadC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0110 ampD regulates ampC 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0111 ampE regulates ampC 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0112 aroP aromatic amino acid transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0113 pdhR transcriptional regulator for pyruvate dehydrogenase complex 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0114 aceE pyruvate dehydrogenase (decarboxylase component) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0115 aceF pyruvate dehydrogenase (dihydrolipoyltransacetylase component) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0116 lpd lipoamide dehydrogenase (NADH)%3B component of 2-oxodehydrogenase and pyruvate complexes%3B L-protein of glycine cleavage complex 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0117 yacH putative membrane protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0118 acnB aconitate hydrase B 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0119 yacL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0120 speD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0121 speE spermidine synthase %3D putrescine aminopropyltransferase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0122 yacC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0123 cueO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0124 gcd - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0125 hpt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0126 can putative carbonic anhdrase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0127 yadG putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0128 yadH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0129 yadI putative PTS enzyme II B component 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0130 yadE conserved hypothetical protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0131 panD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0132 yadD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0133 panC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0134 panB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0135 yadC putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0136 yadK putative fimbrial protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0137 yadL putative fimbrial protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0138 yadM putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0139 htrE probable outer membrane porin protein involved in fimbrial assembly 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0140 yadV probable pilin chaperone similar to PapD 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0141 yadN putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0142 folK 7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0143 pcnB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0144 gluQ putative tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0145 dksA dnaK suppressor protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0146 sfsA probable regulator for maltose metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0147 ligT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0148 hrpB helicase%2C ATP-dependent 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0149 mrcB peptidoglycan synthetase%3B penicillin-binding protein 1B 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0150 fhuA outer membrane protein receptor for ferrichrome%2C colicin M%2C and phages T1%2C T5%2C and phi80 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0151 fhuC ATP-binding component of hydroxymate-dependent iron transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0152 fhuD hydroxamate-dependent iron uptake%2C cytoplasmic membrane component%3B periplasmic-binding component of ABC superfamily 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0153 fhuB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0154 hemL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0155 clcA putative channel transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0156 erpA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0157 yadS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0158 btuF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0159 mtn - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0160 dgt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0161 degP periplasmic serine protease Do%3B heat shock protein HtrA 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0162 cdaR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0163 yaeH putative structural protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0164 yaeI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0166 dapD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0167 glnD protein PII%3B uridylyltransferase acts on regulator of glnA 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0168 map - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0169 rpsB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0170 tsf - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0171 pyrH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0172 frr ribosome releasing factor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0173 dxr - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0174 ispU undecaprenyl pyrophosphate synthetase (di-trans%2Cpoly-cis-decaprenylcistransferase) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0175 cdsA CDP-diglyceride synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0176 rseP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0177 bamA putative outer membrane antigen 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0178 skp periplasmic molecular chaperone for outer membrane proteins 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0179 lpxD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0180 fabZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0181 lpxA UDP-N-acetylglucosamine acetyltransferase%3B lipid A biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0182 lpxB tetraacyldisaccharide-1-P%3B lipid A biosynthesis%2C penultimate step 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0183 rnhB RNAse HII%2C degrades RNA of DNA-RNA hybrids 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0184 dnaE DNA polymerase III%2C alpha subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0185 accA acetylCoA carboxylase%2C carboxytransferase component%2C alpha subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0186 ldcC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0187 yaeR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0188 tilS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0189 rof - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0190 yaeQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0191 arfB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0192 nlpE copper homeostasis protein (lipoprotein) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0193 yaeF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0194 proS proline tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0195 tsaA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0196 rcsF regulator in colanic acid synthesis%3B interacts with RcsB 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0197 metQ D-methionine transport protein (ABC superfamily%2C peri_bind) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0198 metI D- and L-methionine transport protein (ABC superfamily%2C membrane) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0199 metN D- and L-methionine transport protein (ABC superfamily%2C atp_bind) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0200 gmhB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0201 rrsH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0202 ileV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0203 alaV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0204 rrlH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0205 rrfH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0206 aspU - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0207 dkgB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0208 yafC putative transcriptional regulator LYSR-type 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0209 yafD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0210 yafE putative biotin synthesis protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0211 mltD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0212 gloB probable hydroxyacylglutathione hydrolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0213 yafS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0214 rnhA RNase HI%2C degrades RNA of DNA-RNA hybrids%2C participates in DNA replication 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0215 dnaQ DNA polymerase III%2C epsilon subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0216 aspV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0217 yafT putative aminopeptidase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0219 yafV putative EC 3.5. amidase-type enzyme 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0220 ivy inhibitor of vertebrate C-type lysozyme%2C periplasmic 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0221 fadE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0222 gmhA phosphoheptose isomerase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0223 yafJ putative amidotransferase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0224 yafK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0225 yafQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0226 dinJ damage-inducible protein J 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0227 yafL putative lipoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0228 rayT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0231 dinB DNA polymerase IV%3B DNA polymerase IV%2C devoid of proofreading%2C damage-inducible protein P 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0232 yafN - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0233 yafO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0234 yafP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0237 pepD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0238 gpt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0239 frsA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0240 crl sigma factor-binding protein%2C stimulates RNA polymerase holoenzyme formation%3Bregulator%3B Surface structures%3B transcriptional regulator of cryptic csgA gene for curli surface fibers 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0241 phoE outer membrane pore protein E (E%2CIc%2CNmpAB) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0242 proB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0243 proA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0244 thrW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0245 ykfI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0246 yafW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0247 ykfG putative DNA repair protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0248 yafX - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0249 ykfF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0250 ykfB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0251 yafY hypothetical transcriptional regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0252 yafZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0253 ykfA putative GTP-binding protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0254 perR peroxide resistance protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0256 insI1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0259 insH1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0260 mmuP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0261 mmuM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0262 afuC putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0264 insB1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0265 insA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0267 yagA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0268 yagE putative lyase/synthase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0269 yagF putative dehydratase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0270 yagG putative permease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0271 yagH putative beta-xylosidase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0272 yagI putative regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0273 argF ornithine carbamoyltransferase 2%2C chain F 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0274 insB1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0275 insA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0277 yagK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0278 yagL DNA-binding protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0279 yagM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0280 yagN - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0281 intF putative phage integrase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0283 paoD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0284 paoC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0285 paoB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0286 paoA putative xanthine dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0287 yagU - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0288 ykgJ putative ferredoxin 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0289 ecpE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0290 ecpD putative receptor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0291 ecpC putative enzyme 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0292 ecpB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0293 ecpA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0294 ecpR putative regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0295 ykgL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0296 ykgM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0298 insE1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0299 insF1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0301 rclC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0303 rclB the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene%2C and has been deaccessioned 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0304 rclA putative oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0305 rclR putative ARAC-type regulatory protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0306 ykgE putative dehydrogenase subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0307 ykgF - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0308 ykgG putative transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0310 ykgH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0311 betA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0312 betB NAD+-dependent betaine aldehyde dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0313 betI probably transcriptional repressor of bet genes 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0314 betT high-affinity choline transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0315 yahA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0316 yahB putative transcriptional regulator LYSR-type 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0317 yahC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0318 yahD putative transcription factor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0319 yahE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0320 yahF putative oxidoreductase subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0321 yahG - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0323 yahI putative kinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0324 yahJ putative deaminase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0325 yahK putative oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0326 yahL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0327 yahM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0328 yahN putative cytochrome subunit of dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0329 yahO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0330 prpR regulator for prp operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0331 prpB putative phosphonomutase 2 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0333 prpC putative citrate synthase%3B propionate metabolism? 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0334 prpD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0335 prpE putative propionyl-CoA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0336 codB cytosine permease/transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0337 codA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0338 cynR cyn operon positive regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0339 cynT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0340 cynS cyanate aminohydrolase%2C cyanase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0341 cynX cyanate transport 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0342 lacA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0343 lacY galactoside permease (lactose permease%2C M protein) (MFS family) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0345 lacI transcriptional repressor of the lac operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0346 mhpR transcriptional regulator for mhp operon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0347 mhpA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0348 mhpB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0350 mhpD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0351 mhpF acetaldehyde dehydrogenase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0352 mhpE 4-hydroxy-2-ketovalerate aldolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0353 mhpT putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0354 yaiL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0355 frmB putative S-formylglutathione hydrolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0356 frmA alcohol dehydrogenase class III%3B formaldehyde dehydrogenase%2C glutathione-dependent 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0357 frmR repressor of frmRAB 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0358 yaiO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0360 insC1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0361 insD1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0363 yaiP polysaccharide metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0364 yaiS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0365 tauA taurine transport system periplasmic protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0366 tauB taurine ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0367 tauC taurine transport system permease protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0368 tauD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0369 hemB 5-aminolevulinate dehydratase %3D porphobilinogen synthase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0372 insF1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0373 insE1 - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0375 yaiV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0376 ampH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0377 sbmA sensitivity to microcin B17%2C possibly envelop protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0378 yaiW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0379 yaiY - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0380 yaiZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0381 ddlA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0382 iraP - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0383 phoA alkaline phosphatase%3B start codon corrected 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0384 psiF induced by phosphate starvation 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0385 yaiC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0386 proC pyrroline-5-carboxylate reductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0387 yaiI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0388 aroL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0389 yaiA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0390 aroM protein of aro operon%2C regulated by aroR 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0391 yaiE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0393 rdgC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0394 mak possible NAGC-like transcriptional regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0396 araJ involved in either transport or processing of arabinose polymers 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0397 sbcC ATP-dependent dsDNA exonuclease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0398 sbcD ATP-dependent dsDNA exonuclease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0399 phoB positive response regulator for pho regulon%2C sensor is PhoR (or CreC) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0400 phoR positive and negative sensor protein for pho regulon 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0401 brnQ branched chain amino acid transport system II carrier protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0402 proY proline permease transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0403 malZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0404 acpH putative glycoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0405 queA synthesis of queuine in tRNA%3B probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0406 tgt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0407 yajC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0408 secD protein secretion%3B membrane protein%2C part of the channel 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0409 secF protein secretion%2C membrane protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0410 yajD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0411 tsx nucleoside channel%3B receptor of phage T6 and colicin K 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0412 yajI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0413 nrdR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0414 ribD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0415 ribE riboflavin synthase%2C beta chain 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0416 nusB transcription termination%3B L factor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0417 thiL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0418 pgpA phosphatidylglycerophosphatase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0419 yajO putative NAD(P)H-dependent xylose reductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0420 dxs 1-deoxyxylulose-5-phosphate synthase%3B flavoprotein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0421 ispA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0422 xseB exonuclease VII%2C small subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0423 thiI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0424 yajL - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0425 panE 2-dehydropantoate 2-reductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0426 yajQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0427 yajR putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0428 cyoE protoheme IX farnesyltransferase (haeme O biosynthesis) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0429 cyoD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0430 cyoC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0431 cyoB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0432 cyoA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0433 ampG regulates beta-lactamase synthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0434 yajG putative polymerase/proteinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0435 bolA possible regulator of murein genes 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0436 tig trigger factor%3B a molecular chaperone involved in cell division 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0437 clpP ATP-dependent proteolytic subunit of clpA-clpP serine protease%2C heat shock protein F21.5 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0438 clpX ATP-dependent specificity component of clpP serine protease%2C chaperone 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0439 lon DNA-binding%2C ATP-dependent protease La%3B heat shock K-protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0440 hupB DNA-binding protein HU-beta%2C NS1 (HU-1) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0441 ppiD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0442 ybaV - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0443 fadM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0444 queC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0445 ybaE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0446 cof - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0447 ybaO putative LRP-like transcriptional regulator 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0448 mdlA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0449 mdlB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0450 glnK nitrogen regulatory protein P-II 2 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0451 amtB probable ammonium transporter 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0452 tesB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0453 ybaY glycoprotein/polysaccharide metabolism 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0454 ybaZ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0455 ffs - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0456 ybaA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0457 ylaB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0458 ylaC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0459 maa - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0460 hha haemolysin expression modulating protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0461 tomB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0462 acrB acridine efflux pump 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0463 acrA acridine efflux pump 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0464 acrR acrAB operon repressor 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0465 mscK mechanosensitive channel protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0466 ybaM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0467 priC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0468 ybaN putative gene 58 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0469 apt - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0470 dnaX DNA polymerase III%2C tau and gamma subunits%3B DNA elongation factor III 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0471 ybaB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0472 recR recombination and repair 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0473 htpG chaperone Hsp90%2C heat shock protein C 62.5 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0474 adk adenylate kinase activity%3B pleiotropic effects on glycerol-3-phosphate acyltransferase activity 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0475 hemH ferrochelatase: final enzyme of heme biosynthesis 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0476 aes - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0477 gsk inosine-guanosine kinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0478 ybaL putative transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0479 fsr fosmidomycin resistance protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0480 ushA UDP-sugar hydrolase (5'-nucleotidase) 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0481 ybaK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0482 ybaP putative ligase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0483 ybaQ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0484 copA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0485 glsA putative glutaminase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0486 ybaT putative amino acid/amine transport protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0487 cueR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0488 ybbJ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0489 qmcA putative protease 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0490 fetA putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0491 fetB putative metal resistance protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0492 ybbN putative thioredoxin-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0493 ybbO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0494 tesA acyl-CoA thioesterase I%3B also functions as protease I 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0495 ybbA putative ATP-binding component of a transport system 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0496 ybbP putative oxidoreductase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0497 rhsD rhsD protein in rhs element 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0498 ybbC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0503 mnmH putative capsule anchoring protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0504 allS putative transcriptional regulator LYSR-type 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0505 allA - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0506 allR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0507 gcl - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0508 hyi - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0509 glxR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0511 ybbW - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0512 allB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0513 ybbY - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0514 glxK - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0515 allE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0516 allC - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0517 allD - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0518 fdrA involved in protein transport%3B multicopy suppressor of dominant negative ftsH mutants 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0520 ylbF putative carboxylase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0521 ybcF putative carbamate kinase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0522 purK phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C CO(2)-fixing subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0523 purE phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C catalytic subunit 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0524 lpxH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0525 ppiB - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0526 cysS cysteine tRNA synthetase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0527 ybcI - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0528 ybcJ - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0529 folD 5%2C10-methylene-tetrahydrofolate dehydrogenase%3B 5%2C10-methylene-tetrahydrofolate cyclohydrolase 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0530 sfmA putative fimbrial-like protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_0531 sfmC putative chaperone 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4406 yaeP conserved hypothetical protein 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4412 hokC small toxic membrane polypeptide%3B completely contained in another CDS 36 150 12 12 12 1.00000 1.00000 Non-essential +BW25113_4413 sokC - 20 52 12 12 12 1.00000 1.00000 Non-essential +BW25113_4414 tff - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4504 ykfH - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4506 ykgO - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4572 ylbE - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4577 sgrS - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4585 chiX - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4586 ykfM - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4662 sgrT - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4671 ykgR - 0 0 0 0 0 1.00000 1.00000 Non-essential +BW25113_4690 eyeA - 0 0 0 0 0 1.00000 1.00000 Non-essential
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-co1-rep1.wig Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2000 @@ +# from Griffin et al, (2011). PLOS Pathogens, e1002251. +variableStep chrom=H37Rv +60 0 +72 0 +102 0 +188 0 +246 0 +333 0 +360 0 +426 0 +448 0 +471 0 +483 0 +494 0 +504 0 +514 0 +525 0 +534 0 +601 0 +653 0 +670 0 +706 0 +741 0 +784 0 +794 0 +843 0 +989 0 +1092 0 +1104 0 +1267 0 +1278 0 +1345 0 +1423 0 +1522 0 +1552 0 +1635 54 +1779 0 +1782 0 +1788 0 +1847 0 +1858 80 +1921 0 +2001 0 +2012 0 +2063 0 +2104 0 +2141 0 +2232 0 +2290 0 +2315 0 +2318 0 +2333 0 +2344 0 +2363 0 +2387 0 +2404 0 +2427 0 +2479 0 +2507 0 +2537 0 +2591 0 +2648 0 +2738 0 +2774 0 +2845 0 +2920 0 +3027 0 +3056 0 +3066 0 +3070 0 +3119 0 +3131 0 +3145 0 +3222 0 +3228 0 +3277 0 +3283 74 +3329 0 +3372 0 +3379 0 +3384 0 +3396 0 +3412 0 +3425 0 +3441 0 +3467 0 +3471 0 +3513 0 +3591 0 +3682 0 +3708 113 +3728 66 +3739 0 +3770 7 +3782 0 +3796 0 +3833 0 +3925 38 +3960 0 +3967 0 +3986 0 +4011 0 +4028 0 +4094 0 +4118 0 +4121 117 +4130 0 +4158 0 +4207 0 +4217 0 +4353 0 +4664 0 +4721 0 +4789 0 +4912 0 +4961 0 +4970 0 +4989 0 +4995 101 +5066 44 +5120 90 +5128 64 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-co1-rep2.wig Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2000 @@ +# from Griffin et al, (2011). 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-co1-rep3.wig Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2000 @@ +# from Griffin et al, (2011). 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-in1-rep1.wig Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2000 @@ +# from Griffin et al, (2011). 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-in1-rep2.wig Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2000 @@ +# from Griffin et al, (2011). 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+108344 0 +108356 86 +108393 0 +108565 0 +108586 0 +108596 0 +108692 0 +108718 0 +108807 0 +108850 101 +108854 37 +108899 0 +108952 102 +108976 0 +109024 0 +109032 0 +109070 0 +109079 0 +109104 0 +109197 11 +109215 130 +109226 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-in1.prot Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,1000 @@ +chromosomal replication initiation protein 1 1524 + 507 15607143 885041 dnaA Rv0001 COG0593L +DNA polymerase III subunit beta 2052 3260 + 402 15607144 887092 dnaN Rv0002 COG0592L +recombination protein F 3280 4437 + 385 15607145 887089 recF Rv0003 COG1195L +hypothetical protein Rv0004 4434 4997 + 187 15607146 887088 - Rv0004 COG5512R +DNA gyrase subunit B 5123 7267 + 714 15607147 887081 gyrB Rv0005 COG0187L +DNA gyrase subunit A 7302 9818 + 838 15607148 887105 gyrA Rv0006 COG0188L +POSSIBLE CONSERVED MEMBRANE PROTEIN 9914 10828 + 304 15607149 885982 - Rv0007 - +POSSIBLE MEMBRANE PROTEIN 11874 12311 - 145 15607150 887085 - Rv0008c - +PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 12468 13016 + 182 15607151 887087 ppiA Rv0009 COG0652O +PROBABLE CONSERVED MEMBRANE PROTEIN 13133 13558 - 141 15607152 887082 - Rv0010c - +putative septation inhibitor protein 13714 13995 - 93 15607153 887074 - Rv0011c - +PROBABLE CONSERVED MEMBRANE PROTEIN 14089 14877 + 262 15607154 887083 - Rv0012 COG3879S +para-aminobenzoate synthase component II 14914 15612 + 232 57116682 885955 trpG Rv0013 COG0512EH +TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 15590 17470 - 626 15607156 887072 pknB Rv0014c COG0515RTKL, COG2815S +TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 17467 18762 - 431 15607157 885953 pknA Rv0015c COG0515RTKL +PROBABLE PENICILLIN-BINDING PROTEIN PBPA 18759 20234 - 491 15607158 887078 pbpA Rv0016c COG0768M +PROBABLE CELL DIVISION PROTEIN RODA 20231 21640 - 469 15607159 887075 rodA Rv0017c COG0772D +POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 21637 23181 - 514 15607160 887070 ppp Rv0018c COG0631T +hypothetical protein Rv0019c 23270 23737 - 155 15607161 887079 - Rv0019c COG1716T +hypothetical protein Rv0020c 23861 25444 - 527 15607162 887067 TB39.8 Rv0020c COG1716T +hypothetical protein Rv0021c 25913 26881 - 322 15607163 887066 - Rv0021c COG2070R +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 27023 27442 - 139 15607164 887071 whiB5 Rv0022c - +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 27595 28365 + 256 15607165 887062 - Rv0023 COG1396K +PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 28362 29207 + 281 15607166 887061 - Rv0024 COG0791M +hypothetical protein Rv0025 29245 29607 + 120 15607167 887060 - Rv0025 - +hypothetical protein Rv0026 29722 31068 + 448 15607168 887057 - Rv0026 - +hypothetical protein Rv0027 31189 31506 + 105 15607169 887054 - Rv0027 - +hypothetical protein Rv0028 31514 31819 + 101 15607170 885812 - Rv0028 - +hypothetical protein Rv0029 32057 33154 + 365 15607171 887053 - Rv0029 - +hypothetical protein Rv0030 33224 33553 + 109 15607172 887051 - Rv0030 - +POSSIBLE REMNANT OF A TRANSPOSASE 33582 33794 + 70 15607173 887049 - Rv0031 - +POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 34295 36610 + 771 15607174 887050 bioF2 Rv0032 COG0156H +PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 36607 36870 + 87 15607175 887052 acpA Rv0033 COG0236IQ +hypothetical protein Rv0034 36867 37262 + 131 15607176 887046 - Rv0034 COG3631R +PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 37259 38947 + 562 57116683 887048 fadD34 Rv0035 COG0318IQ +hypothetical protein Rv0036c 39056 39829 - 257 15607178 887043 - Rv0036c - +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 39877 41202 - 441 15607179 887042 - Rv0037c COG0477GEPR +hypothetical protein Rv0038 41304 41912 + 202 15607180 887045 - Rv0038 COG1678K +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 42004 42351 - 115 15607181 887038 - Rv0039c - +SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 42433 43365 - 310 57116684 887037 mtc28 Rv0040c - +leucyl-tRNA synthetase 43562 46471 + 969 15607183 887040 leuS Rv0041 COG0495J +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 46581 47207 - 208 15607184 887034 - Rv0042c COG1846K +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 47366 48100 - 244 15607185 887032 - Rv0043c COG1802K +POSSIBLE OXIDOREDUCTASE 48233 49027 - 264 15607186 887030 - Rv0044c COG2141C +POSSIBLE HYDROLASE 49043 49939 - 298 15607187 887029 - Rv0045c COG0596R +MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 50021 51124 - 367 15607188 887028 ino1 Rv0046c COG1260I +hypothetical protein Rv0047c 51185 51727 - 180 15607189 887031 - Rv0047c COG1695K +POSSIBLE MEMBRANE PROTEIN 51828 52697 - 289 15607190 887027 - Rv0048c - +hypothetical protein Rv0049 52831 53244 + 137 15607191 887024 - Rv0049 - +PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 53663 55699 + 678 57116685 887065 ponA1 Rv0050 COG0744M +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 55696 57378 + 560 15607193 887018 - Rv0051 COG5650S +hypothetical protein Rv0052 57410 57973 + 187 15607194 887015 - Rv0052 COG0693R +30S ribosomal protein S6 58192 58482 + 96 15607195 887020 rpsF Rv0053 COG0360J +single-strand DNA-binding protein 58586 59080 + 164 15607196 887013 ssb Rv0054 COG0629L +30S ribosomal protein S18 59122 59376 + 84 57116686 887022 rpsR Rv0055 COG0238J +50S ribosomal protein L9 59409 59867 + 152 15607198 887010 rplI Rv0056 COG0359J +hypothetical protein Rv0057 59896 60417 + 173 15607199 887008 - Rv0057 - +replicative DNA helicase 60396 63020 + 874 15607200 887009 dnaB Rv0058 COG0305L, COG1372L +hypothetical protein Rv0059 63200 63892 + 230 15607201 887006 - Rv0059 - +hypothetical protein Rv0060 63909 64967 + 352 15607202 887004 - Rv0060 COG2110R +hypothetical protein Rv0061 64991 65416 + 141 15607203 887003 - Rv0061 - +POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 65552 66694 + 380 57116687 887007 celA1 Rv0062 COG5297G +POSSIBLE OXIDOREDUCTASE 66923 68362 + 479 15607205 886999 - Rv0063 COG0277C +hypothetical protein Rv0064 68620 71559 + 979 15607206 886996 - Rv0064 COG1615S +hypothetical protein Rv0065 71821 72222 + 133 15607207 886993 - Rv0065 COG4113R +PROBABLE ISOCITRATE DEHYDROGENASE 72274 74511 - 745 15607208 887016 icd2 Rv0066c COG2838C +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 74629 75198 - 189 15607209 886991 - Rv0067c COG1309K +short chain dehydrogenase 75301 76212 + 303 15607210 886989 - Rv0068 COG1028IQR +PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 76237 77622 - 461 15607211 886986 sdaA Rv0069c COG1760E +PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 77619 78896 - 425 15607212 886983 glyA2 Rv0070c COG0112E +POSSIBLE MATURASE 79486 80193 + 235 15607213 886988 - Rv0071 COG3344L +PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 80624 81673 + 349 15607214 886984 - Rv0072 COG0577V +PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 81676 82668 + 330 15607215 886977 - Rv0073 COG1136V +hypothetical protein Rv0074 82748 83983 + 411 15607216 886976 - Rv0074 COG1228Q +PROBABLE AMINOTRANSFERASE 83996 85168 + 390 15607217 886982 - Rv0075 COG1168E +PROBABLE MEMBRANE PROTEIN 85183 85572 - 129 15607218 886992 - Rv0076c - +PROBABLE OXIDOREDUCTASE 85636 86466 - 276 15607219 886969 - Rv0077c COG0596R +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 86528 87133 + 201 15607220 886990 - Rv0078 COG1309K +hypothetical protein Rv0078A 87208 87801 - 197 57116688 3205053 - Rv0078A - +hypothetical protein Rv0079 88204 89025 + 273 15607221 886995 - Rv0079 COG1544J +hypothetical protein Rv0080 89022 89480 + 152 15607222 886966 - Rv0080 - +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 89575 89919 + 114 15607223 887012 - Rv0081 COG0640K +PROBABLE OXIDOREDUCTASE 89924 90403 + 159 15607224 886968 - Rv0082 COG3260C +PROBABLE OXIDOREDUCTASE 90400 92322 + 640 15607225 886965 - Rv0083 COG0651CP +POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 92328 93278 + 316 15607226 886959 hycD Rv0084 COG0650C +POSSIBLE HYDROGENASE HYCP 93289 93951 + 220 15607227 886973 hycP Rv0085 COG4237C +POSSIBLE HYDROGENASE HYCQ 93951 95417 + 488 15607228 886963 hycQ Rv0086 COG0651CP +POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 95414 96892 + 492 15607229 886956 hycE Rv0087 COG3261C, COG3262C +hypothetical protein Rv0088 96927 97601 + 224 15607230 886954 - Rv0088 COG0030J +POSSIBLE METHYLTRANSFERASE/METHYLASE 97758 98351 + 197 15607231 886949 - Rv0089 COG0500QR +POSSIBLE MEMBRANE PROTEIN 98480 99250 + 256 15607232 886961 - Rv0090 COG0601EP, COG3305S +PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 99684 100451 + 255 15607233 886953 mtn Rv0091 COG0775F +PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 100583 102868 + 761 15607234 886946 ctpA Rv0092 COG2217P +PROBABLE CONSERVED MEMBRANE PROTEIN 102815 103663 - 282 15607235 886945 - Rv0093c COG5660S +hypothetical protein Rv0094c 103710 104663 - 317 15607236 886943 - Rv0094c - +hypothetical protein Rv0095c 104805 105215 - 136 15607237 886940 - Rv0095c - +PPE FAMILY PROTEIN 105324 106715 + 463 57116689 886938 PPE1 Rv0096 - +POSSIBLE OXIDOREDUCTASE 106734 107603 + 289 15607239 886942 - Rv0097 COG2175Q +hypothetical protein Rv0098 107600 108151 + 183 15607240 886935 - Rv0098 - +acyl-CoA synthetase 108156 109778 + 540 15607241 886933 fadD10 Rv0099 COG0318IQ +hypothetical protein Rv0100 109783 110019 + 78 15607242 886931 - Rv0100 COG3433Q +PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 110001 117539 + 2512 15607243 886951 nrp Rv0101 COG1020Q, COG3320Q +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 117714 119699 + 661 15607244 886926 - Rv0102 COG3336S +PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB 119915 122173 - 752 15607245 886928 ctpB Rv0103c COG2217P +hypothetical protein Rv0104 122317 123831 + 504 15607246 886923 - Rv0104 COG0664T +50S ribosomal protein L28 123980 124264 - 94 57116690 886920 rpmB Rv0105c COG0227J +hypothetical protein Rv0106 124374 125570 + 398 15607248 886919 - Rv0106 COG0523R +PROBABLE CATION-TRANSPORTER ATPASE I CTPI 125643 130541 - 1632 15607249 886915 ctpI Rv0107c COG0474P +hypothetical protein Rv0108c 130895 131104 - 69 15607250 886918 - Rv0108c - +PE-PGRS FAMILY PROTEIN 131382 132872 + 496 57116691 886912 PE_PGRS1 Rv0109 - +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 133020 133769 + 249 15607252 886917 - Rv0110 COG0705R +POSSIBLE TRANSMEMBRANE ACYLTRANSFERASE 133950 136007 + 685 15607253 886909 - Rv0111 COG1835I +POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) 136289 137245 + 318 15607254 886907 gca Rv0112 COG0451MG +PROBABLE SEDOHEPTULOSE-7-PHOSPHATE ISOMERASE GMHA (PHOSPHOHEPTOSE ISOMERASE) 137319 137909 + 196 15607255 886905 gmhA Rv0113 COG0279G +POSSIBLE D-ALPHA,BETA-D-HEPTOSE-1,7-BIPHOSPHATE PHOSPHATASE GMHB (D-GLYCERO-D-MANNO-HEPTOSE 7-PHOSPHATE KINASE) 137941 138513 + 190 15607256 886903 gmhB Rv0114 COG0241E +POSSIBLE D-ALPHA-D-HEPTOSE-7-PHOSPHATE KINASE HDDA 138513 139673 + 386 15607257 886902 hddA Rv0115 COG2605R +POSSIBLE CONSERVED MEMBRANE PROTEIN 140267 141022 - 251 15607258 886900 - Rv0116c COG1376S +OXIDATIVE STRESS RESPONSE REGULATORY PROTEIN OXYS 141200 142144 + 314 15607259 886914 oxyS Rv0117 COG0583K +putative oxalyl-CoA decarboxylase 142128 143876 - 582 15607260 886898 oxcA Rv0118c COG0028EH +acyl-CoA synthetase 144049 145626 + 525 15607261 886896 fadD7 Rv0119 COG0318IQ +elongation factor G 145627 147771 - 714 15607262 886894 fusA2 Rv0120c COG0480J +hypothetical protein Rv0121c 147908 148342 - 144 15607263 886892 - Rv0121c COG3576R +hypothetical protein Rv0122 148491 148859 + 122 15607264 886888 - Rv0122 - +hypothetical protein Rv0123 148856 149224 + 122 15607265 886887 - Rv0123 - +PE-PGRS FAMILY PROTEIN 149533 150996 + 487 57116692 886883 PE_PGRS2 Rv0124 - +PROBABLE SERINE PROTEASE PEPA (SERINE PROTEINASE) (MTB32A) 151148 152215 + 355 15607267 886924 pepA Rv0125 COG0265O +TREHALOSE SYNTHASE TRES 152324 154129 + 601 15607268 886881 treS Rv0126 COG0366G +hypothetical protein Rv0127 154232 155599 + 455 15607269 886880 - Rv0127 COG3281G +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 155667 156446 + 259 15607270 886878 - Rv0128 COG3619S +SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) 156578 157600 - 340 57116693 886885 fbpC Rv0129c COG0627R +hypothetical protein Rv0130 157847 158302 + 151 15607272 886876 - Rv0130 COG2030I +PROBABLE ACYL-CoA DEHYDROGENASE FADE1 158315 159658 - 447 15607273 886874 fadE1 Rv0131c COG1960I +PUTATIVE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD2 159700 160782 - 360 15607274 886877 fgd2 Rv0132c COG2141C +PROBABLE ACETYLTRANSFERASE 160869 161474 + 201 15607275 886873 - Rv0133 COG0454KR +POSSIBLE EPOXIDE HYDROLASE EPHF (EPOXIDE HYDRATASE) (ARENE-OXIDE HYDRATASE) 161771 162673 + 300 15607276 886871 ephF Rv0134 COG0596R +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 162644 163249 - 201 15607277 886869 - Rv0135c COG1309K +PROBABLE CYTOCHROME P450 138 CYP138 163366 164691 + 441 15607278 886868 cyp138 Rv0136 COG2124Q +methionine sulfoxide reductase A 164712 165260 - 182 15607279 886865 msrA Rv0137c COG0225O +hypothetical protein Rv0138 165323 165826 + 167 15607280 886863 - Rv0138 - +POSSIBLE OXIDOREDUCTASE 165827 166849 + 340 15607281 886860 - Rv0139 COG0451MG +hypothetical protein Rv0140 166910 167290 + 126 15607282 886859 - Rv0140 COG2343S +hypothetical protein Rv0141c 167271 167681 - 136 15607283 886872 - Rv0141c COG3631R +hypothetical protein Rv0142 167711 168637 + 308 15607284 886858 - Rv0142 COG0122L +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 168704 170182 - 492 15607285 886856 - Rv0143c COG0038P +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 170284 171126 + 280 15607286 886854 - Rv0144 COG1309K +hypothetical protein Rv0145 171215 172168 + 317 15607287 886851 - Rv0145 COG3315Q +hypothetical protein Rv0146 172211 173143 + 310 15607288 886849 - Rv0146 COG3315Q +PROBABLE ALDEHYDE DEHYDROGENASE (NAD+) DEPENDENT 173238 174758 + 506 15607289 886847 - Rv0147 COG1012C +PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE 174833 175693 + 286 15607290 886845 - Rv0148 COG1028IQR +POSSIBLE QUINONE OXIDOREDUCTASE (NADPH:QUINONE OXIDOREDUCTASE) (ZETA-CRYSTALLIN) 175700 176668 + 322 15607291 886843 - Rv0149 COG0604CR +hypothetical protein Rv0150c 176665 176952 - 95 15607292 886840 - Rv0150c - +PE FAMILY PROTEIN 177543 179309 - 588 57116694 886857 PE1 Rv0151c - +PE FAMILY PROTEIN 179319 180896 - 525 57116695 886838 PE2 Rv0152c - +PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPB (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) 181155 181985 - 276 15607295 886842 ptbB Rv0153c COG2365T +PROBABLE ACYL-CoA DEHYDROGENASE FADE2 181987 183198 - 403 15607296 886836 fadE2 Rv0154c COG1960I +PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAA 183622 184722 + 366 15607297 886832 pntAa Rv0155 COG3288C +PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB 184723 185055 + 110 15607298 886890 pntAb Rv0156 COG3288C +PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT BETA) PNTB 185052 186479 + 475 15607299 886830 pntB Rv0157 COG1282C +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 186785 187429 + 214 15607300 886828 - Rv0158 COG1309K +PE FAMILY PROTEIN 187433 188839 - 468 57116696 886826 PE3 Rv0159c - +PE FAMILY PROTEIN 188931 190439 - 502 57116697 886825 PE4 Rv0160c - +POSSIBLE OXIDOREDUCTASE 190607 191956 + 449 15607303 886835 - Rv0161 COG0277C +PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE (E SUBUNIT) ADHE 191984 193135 - 383 57116698 886824 adhE1 Rv0162c COG1062C +hypothetical protein Rv0163 193117 193572 + 151 15607305 886821 - Rv0163 COG0824R +hypothetical protein Rv0164 193626 194111 + 161 57116699 886267 TB18.5 Rv0164 COG2867I +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 194144 194938 - 264 57116700 886818 - Rv0165c COG1802K +acyl-CoA synthetase 194993 196657 + 554 15607307 886822 fadD5 Rv0166 COG0318IQ +CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A 196861 197658 + 265 15607308 886816 yrbE1A Rv0167 COG0767Q +CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1B 197660 198529 + 289 15607309 886812 yrbE1B Rv0168 COG0767Q +MCE-FAMILY PROTEIN MCE1A 198534 199898 + 454 57116701 886823 mce1A Rv0169 COG0840NT, COG1463Q +MCE-FAMILY PROTEIN MCE1B 199895 200935 + 346 15607311 886810 mce1B Rv0170 COG1463Q +MCE-FAMILY PROTEIN MCE1C 200932 202479 + 515 15607312 886808 mce1C Rv0171 COG0840NT, COG1463Q +MCE-FAMILY PROTEIN MCE1D 202476 204068 + 530 15607313 886807 mce1D Rv0172 COG1463Q +POSSIBLE MCE-FAMILY LIPOPROTEIN LPRK (MCE-FAMILY LIPOPROTEIN MCE1E) 204065 205237 + 390 15607314 886804 lprK Rv0173 COG1463Q +MCE-FAMILY PROTEIN MCE1F 205231 206778 + 515 15607315 886820 mce1F Rv0174 COG1463Q +PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 206814 207455 + 213 15607316 886801 - Rv0175 - +PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN 207452 208420 + 322 15607317 886799 - Rv0176 COG1714S +PROBABLE CONSERVED MCE ASSOCIATED PROTEIN 208417 208971 + 184 15607318 886795 - Rv0177 - +PROBABLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN 208938 209672 + 244 15607319 886814 - Rv0178 - +POSSIBLE LIPOPROTEIN LPRO 209703 210812 - 369 15607320 886796 lprO Rv0179c - +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 210892 212250 - 452 15607321 886792 - Rv0180c COG1511S +hypothetical protein Rv0181c 212277 213011 - 244 15607322 886788 - Rv0181c COG1741R +RNA polymerase factor sigma-70 213028 214140 - 370 15607323 886786 sigG Rv0182c COG1595K +POSSIBLE LYSOPHOSPHOLIPASE 214088 214927 + 279 57116702 886785 - Rv0183 COG2267I +hypothetical protein Rv0184 214969 215718 + 249 15607325 886806 - Rv0184 - +hypothetical protein Rv0185 215715 216224 + 169 15607326 886782 - Rv0185 - +PROBABLE BETA-GLUCOSIDASE BGLS (GENTIOBIASE) (CELLOBIASE) (BETA-D-GLUCOSIDE GLUCOHYDROLASE) 216269 218344 + 691 15607327 886780 bglS Rv0186 COG1472G +PROBABLE O-METHYLTRANSFERASE 218705 219367 + 220 15607328 886779 - Rv0187 COG4122R +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 219486 219917 + 143 15607329 886776 - Rv0188 - +dihydroxy-acid dehydratase 219996 221723 - 575 15607330 886774 ilvD Rv0189c COG0129EG +hypothetical protein Rv0190 221871 222161 + 96 15607331 886772 - Rv0190 COG1937S +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 222289 223530 + 413 15607332 886770 - Rv0191 COG2814G +hypothetical protein Rv0192 223564 224664 + 366 15607333 886768 - Rv0192 COG1376S +CONSERVED SECRETED PROTEIN 223607 223909 + 100 57116703 3205105 - Rv0192A - +hypothetical protein Rv0193c 224724 226571 - 615 15607334 886764 - Rv0193c - +PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER 226878 230462 + 1194 15607335 886790 - Rv0194 COG1132V +POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 230899 231534 + 211 15607336 886762 - Rv0195 COG2197TK +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 231647 232231 + 194 15607337 886760 - Rv0196 COG1309K +POSSIBLE OXIDOREDUCTASE 232231 234519 + 762 15607338 886758 - Rv0197 COG0243C +PROBABLE ZINC METALLOPROTEASE 234516 236507 - 663 15607339 886755 - Rv0198c COG3590O +PROBABLE CONSERVED MEMBRANE PROTEIN 236550 237209 + 219 15607340 886753 - Rv0199 - +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 237206 237895 + 229 15607341 886803 - Rv0200 - +hypothetical protein Rv0201c 237892 238395 - 167 15607342 886756 - Rv0201c COG1476K +PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL11 238392 241292 - 966 15607343 886750 mmpL11 Rv0202c COG2409R +POSSIBLE EXPORTED PROTEIN 241514 241924 + 136 15607344 886748 - Rv0203 - +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 241976 243214 - 412 15607345 886747 - Rv0204c COG0392S +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 243384 244487 + 367 15607346 886766 - Rv0205 COG0628R +POSSIBLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL3 244484 247318 - 944 15607347 886752 mmpL3 Rv0206c COG2409R +hypothetical protein Rv0207c 247384 248112 - 242 15607348 886742 - Rv0207c COG1432S +tRNA (guanine-N(7))-methyltransferase 248115 248906 - 263 15607349 886740 trmB Rv0208c COG0220R +hypothetical protein Rv0209 249038 250123 + 361 15607350 886739 - Rv0209 - +hypothetical protein Rv0210 250120 251598 + 492 15607351 886735 - Rv0210 - +phosphoenolpyruvate carboxykinase 251782 253602 + 606 15607352 886744 pckA Rv0211 COG1274C +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) 253669 254640 - 323 15607353 886734 nadR Rv0212c COG1056H, COG3172H +POSSIBLE METHYLTRANSFERASE (METHYLASE) 254637 255950 - 437 15607354 886746 - Rv0213c COG1032C +acyl-CoA synthetase 256064 257677 + 537 15607355 886737 fadD4 Rv0214 COG0318IQ +PROBABLE ACYL-CoA DEHYDROGENASE FADE3 257783 258856 - 357 15607356 886730 fadE3 Rv0215c COG1960I +hypothetical protein Rv0216 258913 259926 + 337 15607357 886729 - Rv0216 COG2030I +POSSIBLE ESTERASE LIPW 259923 260831 - 302 15607358 886726 lipW Rv0217c COG0657I +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 260924 262252 + 442 15607359 886727 - Rv0218 COG2041R +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 262254 262802 + 182 15607360 886725 - Rv0219 - +PROBABLE ESTERASE LIPC 262812 264023 + 403 15607361 886722 lipC Rv0220 COG0657I +hypothetical protein Rv0221 264067 265476 + 469 15607362 886719 - Rv0221 COG1020Q +enoyl-CoA hydratase 265507 266295 + 262 15607363 886723 echA1 Rv0222 COG1024I +PROBABLE ALDEHYDE DEHYDROGENASE 266301 267764 - 487 15607364 886718 - Rv0223c COG1012C +POSSIBLE METHYLTRANSFERASE (METHYLASE) 267863 268627 - 254 15607365 886715 - Rv0224c COG0500QR +POSSIBLE CONSERVED PROTEIN 268663 269817 + 384 15607366 886713 - Rv0225 COG0438M +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 269834 271564 - 576 15607367 886711 - Rv0226c - +PROBABLE CONSERVED MEMBRANE PROTEIN 271574 272839 - 421 15607368 886710 - Rv0227c - +PROBABLE INTEGRAL MEMBRANE ACYLTRANSFERASE 273055 274278 + 407 15607369 886708 - Rv0228 COG1835I +POSSIBLE CONSERVED MEMBRANE PROTEIN 274306 274986 - 226 15607370 886724 - Rv0229c COG1487R +PROBABLE PHOSPHOTRIESTERASE PHP (PARATHION HYDROLASE) (PTE) (ARYLDIALKYLPHOSPHATASE) (PARAOXONASE) (A-ESTERASE) (ARYLTRIPHOSPHATASE) (PARAOXON HYDROLASE) 274983 275963 - 326 15607371 886705 php Rv0230c COG1735R +PROBABLE ACYL-CoA DEHYDROGENASE FADE4 276058 277764 + 568 15607372 886703 fadE4 Rv0231 COG1960I +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 277899 278588 + 229 15607373 886701 - Rv0232 COG1309K +ribonucleotide-diphosphate reductase subunit beta 278585 279529 + 314 15607374 886699 nrdB Rv0233 COG0208F +succinic semialdehyde dehydrogenase 279605 281140 - 511 57116704 886732 gabD1 Rv0234c COG1012C +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 281166 282614 - 482 15607376 886695 - Rv0235c - +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 282649 286851 - 1400 15607377 886707 - Rv0236c - +SMALL SECRETED PROTEIN 286898 287071 - 57 57116705 3205106 - Rv0236A - +PROBABLE CONSERVED LIPOPROTEIN LPQI 287186 288352 + 388 57116706 886693 lpqI Rv0237 COG1472G +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 288428 289042 + 204 15607379 886691 - Rv0238 COG1309K +hypothetical protein Rv0239 289104 289337 + 77 15607380 886689 - Rv0239 - +hypothetical protein Rv0240 289345 289782 + 145 15607381 886688 - Rv0240 COG1848R +hypothetical protein Rv0241c 289812 290654 - 280 15607382 886686 - Rv0241c COG2030I +3-ketoacyl-(acyl-carrier-protein) reductase 290665 292029 - 454 15607383 886697 fabG Rv0242c COG1028IQR +acetyl-CoA acetyltransferase 292171 293493 + 440 15607384 886682 fadA2 Rv0243 COG0183I +PROBABLE ACYL-CoA DEHYDROGENASE FADE5 293798 295633 - 611 15607385 886698 fadE5 Rv0244c COG1960I +POSSIBLE OXIDOREDUCTASE 296005 296493 + 162 15607386 886680 - Rv0245 COG1853R +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 296809 298119 + 436 15607387 886678 - Rv0246 - +fumarate reductase iron-sulfur subunit 298116 298862 - 248 15607388 886677 - Rv0247c COG0479C +succinate dehydrogenase flavoprotein subunit 298863 300803 - 646 15607389 886675 sdhA Rv0248c COG1053C +PROBABLE SUCCINATE DEHYDROGENASE 300834 301655 - 273 15607390 886671 - Rv0249c - +hypothetical protein Rv0250c 301735 302028 - 97 15607391 886669 - Rv0250c - +HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) 302173 302652 - 159 15607392 886667 hsp Rv0251c COG0071O +PROBABLE NITRITE REDUCTASE 302866 305427 + 853 15607393 886665 nirB Rv0252 COG1251C +PROBABLE NITRITE REDUCTASE 305453 305809 + 118 15607394 886664 nirD Rv0253 COG2146PR +PROBABLE BIFUNCTIONAL COBALAMIN BIOSYNTHESIS PROTEIN COBU: COBINAMIDE KINASE + COBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE 305825 306349 - 174 15607395 886661 cobU Rv0254c COG2087H +cobyric acid synthase 306374 307858 - 494 57116707 886673 cobQ1 Rv0255c COG1492H +PPE FAMILY PROTEIN 307877 309547 - 556 57116708 886684 PPE2 Rv0256c - +hypothetical protein Rv0257 309699 310073 + 124 57116709 3205110 - Rv0257 - +hypothetical protein Rv0258c 310294 310749 - 151 15607399 886654 - Rv0258c - +hypothetical protein Rv0259c 310774 311517 - 247 15607400 886657 - Rv0259c COG2138S +bifunctional uroporphyrinogen-III synthetase/response regulator domain protein 311514 312659 - 381 15607401 886651 - Rv0260c COG0745TK, COG1587H +PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARK3 (NITRITE FACILITATOR) 312759 314168 - 469 15607402 886663 narK3 Rv0261c COG2223P +AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) 314309 314854 - 181 15607403 886648 aac Rv0262c COG0456R +hypothetical protein Rv0263c 314864 315766 - 300 15607404 886659 - Rv0263c COG1984E +hypothetical protein Rv0264c 315783 316415 - 210 15607405 886646 - Rv0264c COG2049E +PROBABLE PERIPLASMIC IRON-TRANSPORT LIPOPROTEIN 316511 317503 - 330 57116710 886650 - Rv0265c COG0614P +PROBABLE 5-OXOPROLINASE OPLA (5-OXO-L-PROLINASE) (PYROGLUTAMASE) (5-OPASE) 317525 321154 - 1209 15607407 886642 oplA Rv0266c COG0145EQ, COG0146EQ +PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARU (NITRITE FACILITATOR) 321331 322722 + 463 15607408 886644 narU Rv0267 COG2223P +hypothetical protein Rv0268c 322764 323273 - 169 15607409 886647 - Rv0268c COG2161D +hypothetical protein Rv0269c 323338 324531 - 397 15607410 886640 - Rv0269c COG3285L +acyl-CoA synthetase 324567 326249 + 560 15607411 886637 fadD2 Rv0270 COG0318IQ +PROBABLE ACYL-CoA DEHYDROGENASE FADE6 326266 328461 - 731 15607412 886641 fadE6 Rv0271c COG1960I +hypothetical protein Rv0272c 328575 329708 - 377 15607413 886635 - Rv0272c - +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 329705 330325 - 206 15607414 886633 - Rv0273c COG1309K +hypothetical protein Rv0274 330422 331003 + 193 15607415 886631 - Rv0274 COG0346E +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 330933 331658 - 241 57116711 886629 - Rv0275c COG1309K +hypothetical protein Rv0276 331748 332668 + 306 15607417 886627 - Rv0276 COG3662S +hypothetical protein Rv0277c 332708 333136 - 142 15607418 886625 - Rv0277c - +PE-PGRS FAMILY PROTEIN 333437 336310 - 957 57116712 886623 PE_PGRS3 Rv0278c - +PE-PGRS FAMILY PROTEIN 336560 339073 - 837 57116713 886621 PE_PGRS4 Rv0279c - +PPE FAMILY PROTEIN 339364 340974 + 536 57116714 886619 PPE3 Rv0280 - +hypothetical protein Rv0281 340998 341906 + 302 15607422 886618 - Rv0281 COG3315Q +hypothetical protein Rv0282 342130 344025 + 631 15607423 886613 - Rv0282 COG0464O +POSSIBLE CONSERVED MEMBRANE PROTEIN 344022 345638 + 538 15607424 886645 - Rv0283 - +POSSIBLE CONSERVED MEMBRANE PROTEIN 345635 349627 + 1330 15607425 886611 - Rv0284 COG1674D +PE FAMILY PROTEIN 349624 349932 + 102 57116715 886608 PE5 Rv0285 - +PPE FAMILY PROTEIN 349935 351476 + 513 57116716 886607 PPE4 Rv0286 - +ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) 351525 351818 + 97 15607428 886604 esxG Rv0287 - +LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) 351848 352138 + 96 15607429 886603 esxH Rv0288 COG4842S +hypothetical protein Rv0289 352149 353036 + 295 15607430 886602 - Rv0289 - +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 353083 354501 + 472 15607431 886599 - Rv0290 - +PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) 354498 355883 + 461 15607432 886615 mycP3 Rv0291 COG1404O +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 355880 356875 + 331 15607433 886601 - Rv0292 - +hypothetical protein Rv0293c 356862 358064 - 400 15607434 886594 - Rv0293c COG0596R +PROBABLE TRANS-ACONITATE METHYLTRANSFERASE TAM 358171 358956 + 261 15607435 886593 tam Rv0294 COG4106R +hypothetical protein Rv0295c 358945 359748 - 267 15607436 886596 - Rv0295c COG4424S +PROBABLE SULFATASE 359758 361155 - 465 57116717 886600 - Rv0296c COG3119P +PE-PGRS FAMILY PROTEIN 361334 363109 + 591 57116718 885981 PE_PGRS5 Rv0297 - +hypothetical protein Rv0298 363252 363479 + 75 15607439 886590 - Rv0298 - +hypothetical protein Rv0299 363476 363778 + 100 15607440 886598 - Rv0299 COG0012J +hypothetical protein Rv0300 363826 364047 + 73 15607441 886588 - Rv0300 - +hypothetical protein Rv0301 364044 364469 + 141 15607442 886586 - Rv0301 COG1487R +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) 364605 365237 + 210 15607443 886584 - Rv0302 COG1309K +PROBABLE DEHYDROGENASE/REDUCTASE 365234 366142 + 302 15607444 886581 - Rv0303 COG1028IQR +PPE FAMILY PROTEIN 366150 372764 - 2204 57116719 886592 PPE5 Rv0304c COG1357S +PPE FAMILY PROTEIN 372820 375711 - 963 57116720 885978 PPE6 Rv0305c - +PUTATIVE OXIDOREDUCTASE 375914 376585 + 223 15607447 886577 - Rv0306 COG0778C +hypothetical protein Rv0307c 376573 377055 - 160 15607448 886580 - Rv0307c - +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 377113 377829 + 238 15607449 886583 - Rv0308 COG0671I +POSSIBLE CONSERVED EXPORTED PROTEIN 377931 378587 + 218 15607450 886574 - Rv0309 COG3786S +hypothetical protein Rv0310c 378657 379148 - 163 15607451 886570 - Rv0310c - +hypothetical protein Rv0311 379172 380401 + 409 15607452 886579 - Rv0311 - +CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN 380556 382418 + 620 15607453 886566 - Rv0312 COG0443O +hypothetical protein Rv0313 382490 382876 + 128 15607454 886572 - Rv0313 - +POSSIBLE CONSERVED MEMBRANE PROTEIN 382879 383541 - 220 15607455 886564 - Rv0314c - +POSSIBLE BETA-1,3-GLUCANASE PRECURSOR 383602 384486 + 294 15607456 886563 - Rv0315 COG2273G +POSSIBLE MUCONOLACTONE ISOMERASE 384535 385149 + 204 15607457 886560 - Rv0316 COG4829Q +POSSIBLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ2 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) 385173 385943 - 256 15607458 886559 glpQ2 Rv0317c COG0584C +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 386305 387099 - 264 57116721 886576 - Rv0318c COG0428P +pyrrolidone-carboxylate peptidase 387148 387816 + 222 15607460 886555 pcp Rv0319 COG2039O +POSSIBLE CONSERVED EXPORTED PROTEIN 387888 388550 + 220 15607461 886553 - Rv0320 - +deoxycytidine triphosphate deaminase 388582 389154 + 190 15607462 886552 dcd Rv0321 COG0717F +PROBABLE UDP-GLUCOSE 6-DEHYDROGENASE UDGA (UDP-GLC DEHYDROGENASE) (UDP-GLCDH) (UDPGDH) 389260 390591 + 443 15607463 886550 udgA Rv0322 COG1004M +hypothetical protein Rv0323c 390580 391251 - 223 15607464 886557 - Rv0323c COG2120S +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 391352 392032 + 226 15607465 886548 - Rv0324 COG0607P, COG0640K +hypothetical protein Rv0325 392039 392263 + 74 15607466 886546 - Rv0325 COG0500QR +hypothetical protein Rv0326 392273 392728 + 151 15607467 886544 - Rv0326 COG0500QR +POSSIBLE CYTOCHROME P450 135A1 CYP135A1 392696 394045 - 449 15607468 886538 cyp135A1 Rv0327c COG2124Q +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR/ACRR-FAMILY) 394111 394713 + 200 15607469 886542 - Rv0328 COG1309K +hypothetical protein Rv0329c 394694 395320 - 208 15607470 886536 - Rv0329c COG0500QR +hypothetical protein Rv0330c 395347 396087 - 246 15607471 886540 - Rv0330c COG1309K +POSSIBLE DEHYDROGENASE/REDUCTASE 396201 397367 + 388 15607472 886534 - Rv0331 COG0446R +hypothetical protein Rv0332 397442 398227 + 261 15607473 886532 - Rv0332 - +hypothetical protein Rv0333 398254 398628 + 124 15607474 886528 - Rv0333 - +ALPHA-D-GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE RMLA (DTDP-GLUCOSE SYNTHASE) (DTDP-GLUCOSE PYROPHOSPHORYLASE) 398658 399524 + 288 15607475 886568 rmlA Rv0334 COG1209M +PE FAMILY PROTEIN 399535 400050 - 171 57116722 886527 PE6 Rv0335c - +CONSERVED 13E12 REPEAT FAMILY PROTEIN 400192 401703 + 503 15607477 886524 - Rv0336 - +aminotransferase AlaT 401873 403162 - 429 15607478 886522 aspC Rv0337c COG0436E +PROBABLE IRON-SULFUR-BINDING REDUCTASE 403193 405841 - 882 15607479 886520 - Rv0338c COG0247C +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 405950 408448 - 832 15607480 886516 - Rv0339c COG2197TK, COG2771K +hypothetical protein Rv0340 408634 409173 + 179 15607481 886514 - Rv0340 - +ISONIAZID INDUCTIBLE GENE PROTEIN INIB 409362 410801 + 479 15607482 886518 iniB Rv0341 - +ISONIAZID INDUCTIBLE GENE PROTEIN INIA 410838 412760 + 640 15607483 886510 iniA Rv0342 COG0699R +ISONIAZID INDUCTIBLE GENE PROTEIN INIC 412757 414238 + 493 15607484 886508 iniC Rv0343 COG0699R +PROBABLE LIPOPROTEIN LPQJ 414381 414941 - 186 15607485 886512 lpqJ Rv0344c - +hypothetical protein Rv0345 415050 415460 + 136 15607486 886505 - Rv0345 COG2068R +POSSIBLE L-ASPARAGINE PERMEASE ANSP2 (L-ASPARAGINE TRANSPORT PROTEIN) 415502 416965 - 487 57116723 886530 ansP2 Rv0346c COG1113E +PROBABLE CONSERVED MEMBRANE PROTEIN 417304 418290 + 328 15607488 886501 - Rv0347 - +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 418293 418946 + 217 15607489 886500 - Rv0348 COG1396K +hypothetical protein Rv0349 418949 419608 + 219 15607490 886506 - Rv0349 - +molecular chaperone DnaK 419835 421712 + 625 15607491 885946 dnaK Rv0350 COG0443O +PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) 421709 422416 + 235 15607492 886497 grpE Rv0351 COG0576O +PROBABLE CHAPERONE PROTEIN DNAJ1 422452 423639 + 395 57116724 886495 dnaJ1 Rv0352 COG0484O +PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) 423639 424019 + 126 15607494 885929 hspR Rv0353 COG0789K +PPE FAMILY PROTEIN 424269 424694 - 141 57116725 886498 PPE7 Rv0354c - +PPE FAMILY PROTEIN 424777 434679 - 3300 57116726 886491 PPE8 Rv0355c COG1357S +hypothetical protein Rv0356c 434830 435474 - 214 15607497 886490 - Rv0356c COG2050Q +adenylosuccinate synthetase 435471 436769 - 432 15607498 886484 purA Rv0357c COG0104F +hypothetical protein Rv0358 436860 437507 + 215 15607499 886493 - Rv0358 - +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 437518 438297 + 259 15607500 886482 - Rv0359 COG1994R +hypothetical protein Rv0360c 438302 438739 - 145 15607501 886480 - Rv0360c - +PROBABLE CONSERVED MEMBRANE PROTEIN 438822 439649 + 275 15607502 886478 - Rv0361 - +POSSIBLE Mg2+ TRANSPORT TRANSMEMBRANE PROTEIN MGTE 439871 441253 + 460 15607503 886476 mgtE Rv0362 COG2239P +fructose-bisphosphate aldolase 441265 442299 - 344 15607504 886474 fba Rv0363c COG0191G +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 442395 443078 + 227 15607505 886473 - Rv0364 COG0586S +hypothetical protein Rv0365c 443067 444197 - 376 15607506 886487 - Rv0365c COG4833G +hypothetical protein Rv0366c 444222 444815 - 197 15607507 886471 - Rv0366c COG4185S +hypothetical protein Rv0367c 444844 445233 - 129 15607508 886468 - Rv0367c - +hypothetical protein Rv0368c 445314 446525 - 403 15607509 886469 - Rv0368c COG3552R +POSSIBLE MEMBRANE OXIDOREDUCTASE 446531 447046 - 171 15607510 886485 - Rv0369c COG3427S +POSSIBLE OXIDOREDUCTASE 447147 448043 - 298 15607511 886465 - Rv0370c COG0714R +hypothetical protein Rv0371c 448040 448633 - 197 15607512 886463 - Rv0371c COG2068R +hypothetical protein Rv0372c 448630 449385 - 251 15607513 886460 - Rv0372c COG1975O +PROBABLE CARBON MONOXYDE DEHYDROGENASE (LARGE CHAIN) 449404 451803 - 799 15607514 886472 - Rv0373c COG1529C +PROBABLE CARBON MONOXYDE DEHYDROGENASE (SMALL CHAIN) 451800 452279 - 159 15607515 886462 - Rv0374c COG2080C +PROBABLE CARBON MONOXYDE DEHYDROGENASE (MEDIUM CHAIN) 452294 453154 - 286 15607516 886456 - Rv0375c COG1319C +hypothetical protein Rv0376c 453230 454372 - 380 15607517 886454 - Rv0376c COG1975O +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LYSR-FAMILY) 454421 455386 + 321 15607518 886452 - Rv0377 COG0583K +CONSERVED HYPOTHETICAL GLYCINE RICH PROTEIN 455637 455858 + 73 15607519 886450 - Rv0378 - +POSSIBLE PROTEIN TRANSPORT PROTEIN SECE2 455977 456192 + 71 57116727 886449 secE2 Rv0379 COG3360S +POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) 456268 456819 - 183 15607521 886446 - Rv0380c COG0566J +hypothetical protein Rv0381c 456915 457823 - 302 15607522 886444 - Rv0381c - +orotate phosphoribosyltransferase 457841 458380 - 179 57116728 886443 pyrE Rv0382c COG0461F +POSSIBLE CONSERVED SECRETED PROTEIN 458461 459315 - 284 15607524 886458 - Rv0383c - +PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) 459456 462002 - 848 15607525 886440 clpB Rv0384c COG0542O +hypothetical protein Rv0385 462135 463307 + 390 15607526 886441 - Rv0385 COG0543HC, COG1017C +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) 463411 466668 + 1085 15607527 886030 - Rv0386 COG2114T, COG2771K, COG3903R +hypothetical protein Rv0387c 466672 467406 - 244 15607528 886436 - Rv0387c - +PPE FAMILY PROTEIN 467459 468001 - 180 57116729 886439 PPE9 Rv0388c - +phosphoribosylglycinamide formyltransferase 2 468335 469594 + 419 15607530 886032 purT Rv0389 COG0027F +hypothetical protein Rv0390 469591 470013 + 140 15607531 886433 - Rv0390 COG0607P +O-succinylhomoserine sulfhydrylase 470010 471230 + 406 15607532 886431 metZ Rv0391 COG0626E +PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA 471227 472639 - 470 15607533 886430 ndhA Rv0392c COG1252C +CONSERVED 13E12 REPEAT FAMILY PROTEIN 472781 474106 + 441 15607534 886428 - Rv0393 - +POSSIBLE SECRETED PROTEIN 474122 474841 - 239 15607535 886435 - Rv0394c - +hypothetical protein Rv0395 474940 475344 + 134 15607536 886425 - Rv0395 - +hypothetical protein Rv0396 475350 475742 + 130 15607537 886423 - Rv0396 - +CONSERVED 13E12 REPEAT FAMILY PROTEIN 475816 476184 + 122 15607538 886421 - Rv0397 - +POSSIBLE SECRETED PROTEIN 476679 477320 - 213 15607539 886419 - Rv0398c - +POSSIBLE CONSERVED LIPOPROTEIN LPQK 477327 478556 - 409 15607540 886416 lpqK Rv0399c COG1680V +ACYL-CoA DEHYDROGENASE FADE7 478566 479753 - 395 15607541 886427 fadE7 Rv0400c COG1960I +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 479789 480160 + 123 15607542 886438 - Rv0401 - +PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL1 480355 483231 - 958 15607543 886413 mmpL1 Rv0402c COG2409R +PROBABLE CONSERVED MEMBRANE PROTEIN MMPS1 483228 483656 - 142 15607544 886411 mmpS1 Rv0403c - +acyl-CoA synthetase 483977 485734 + 585 15607545 886409 fadD30 Rv0404 COG0318IQ +PROBABLE MEMBRANE BOUND POLYKETIDE SYNTHASE PKS6 485731 489939 + 1402 15607546 886407 pks6 Rv0405 COG3321Q +BETA LACTAMASE LIKE PROTEIN 489887 490705 - 272 15607547 886403 - Rv0406c COG0491R +PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1 490783 491793 + 336 15607548 886418 fgd1 Rv0407 COG2141C +phosphate acetyltransferase 491786 493858 + 690 15607549 886401 pta Rv0408 COG0280C, COG0857R +acetate kinase 493851 495008 + 385 15607550 886399 ackA Rv0409 COG0282C +SERINE/THREONINE-PROTEIN KINASE PKNG (PROTEIN KINASE G) (STPK G) 495062 497314 - 750 15607551 886397 pknG Rv0410c COG0515RTKL +PROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP) 497314 498300 - 328 15607552 886393 glnH Rv0411c COG0834ET +POSSIBLE CONSERVED MEMBRANE PROTEIN 498300 499619 - 439 15607553 886415 - Rv0412c - +POSSIBLE MUTATOR PROTEIN MUTT3 (7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE) (8-OXO-DGTPASE) (DGTP PYROPHOSPHOHYDROLASE) 499713 500366 + 217 15607554 886405 mutT3 Rv0413 COG0494LR +thiamine-phosphate pyrophosphorylase 500350 501018 - 222 15607555 886391 thiE Rv0414c COG0352H +POSSIBLE THIAMINE BIOSYNTHESIS OXIDOREDUCTASE THIO 501148 502170 + 340 15607556 886390 thiO Rv0415 COG0665E +sulfur carrier protein ThiS 502167 502373 + 68 15607557 886395 thiS Rv0416 COG2104H +thiazole synthase 502366 503124 + 252 15607558 886396 thiG Rv0417 COG2022H +PROBABLE LIPOPROTEIN AMINOPEPTIDASE LPQL 503496 504998 + 500 15607559 886381 lpqL Rv0418 COG2234R +POSSIBLE LIPOPROTEIN PEPTIDASE LPQM 505086 506582 + 498 15607560 886388 lpqM Rv0419 COG2321R +POSSIBLE TRANSMEMBRANE PROTEIN 506561 506971 - 136 15607561 886383 - Rv0420c - +hypothetical protein Rv0421c 507132 507761 - 209 15607562 886377 - Rv0421c COG3571R +phosphomethylpyrimidine kinase 507758 508555 - 265 15607563 886375 thiD Rv0422c COG0351H +thiamine biosynthesis protein ThiC 508582 510225 - 547 15607564 886379 thiC Rv0423c COG0422H +hypothetical protein Rv0424c 510377 510652 - 91 15607565 886374 - Rv0424c - +POSSIBLE METAL CATION TRANSPORTING P-TYPE ATPASE CTPH 510702 515321 - 1539 15607566 886373 ctpH Rv0425c COG0474P +POSSIBLE TRANSMEMBRANE PROTEIN 515373 515816 - 147 15607567 886387 - Rv0426c - +PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III) (EXO III) (AP ENDONUCLEASE VI) 516017 516892 - 291 15607568 886370 xthA Rv0427c COG0708L +hypothetical protein Rv0428c 516895 517803 - 302 15607569 886368 - Rv0428c COG0454KR +peptide deformylase 517803 518396 - 197 15607570 886366 def Rv0429c COG0242J +hypothetical protein Rv0430 518733 519041 + 102 15607571 886364 - Rv0430 - +PUTATIVE TUBERCULIN RELATED PEPTIDE 519073 519567 + 164 15607572 886362 - Rv0431 - +PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE 519600 520322 + 240 15607573 886358 sodC Rv0432 COG2032P +hypothetical protein Rv0433 520324 521454 + 376 15607574 886356 - Rv0433 COG2170S +hypothetical protein Rv0434 521514 522167 + 217 15607575 886360 - Rv0434 COG2802R +PUTATIVE CONSERVED ATPASE 522347 524533 - 728 15607576 886352 - Rv0435c COG0464O +PROBABLE CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE PSSA (PS SYNTHASE) (PHOSPHATIDYLSERINE SYNTHASE) 524530 525390 - 286 15607577 886385 pssA Rv0436c COG1183I +phosphatidylserine decarboxylase 525387 526082 - 231 15607578 886350 psd Rv0437c COG0688I +PROBABLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA2 526143 527360 - 405 57116730 886348 moeA2 Rv0438c COG0303H +short chain dehydrogenase 527379 528314 - 311 15607580 886342 - Rv0439c COG1028IQR +chaperonin GroEL 528608 530230 + 540 15607581 886354 groEL Rv0440 COG0459O +hypothetical protein Rv0441c 530296 530724 - 142 15607582 886344 - Rv0441c - +PPE FAMILY PROTEIN 530751 532214 - 487 57116731 886340 PPE10 Rv0442c - +hypothetical protein Rv0443 532396 532911 + 171 15607584 886336 - Rv0443 - +hypothetical protein Rv0444c 533091 533789 - 232 15607585 886346 - Rv0444c COG5343S +RNA polymerase sigma factor SigK 533833 534396 - 187 15607586 886334 sigK Rv0445c COG1595K +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 534445 535215 - 256 15607587 886332 - Rv0446c COG3752S +PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) 535224 536507 - 427 15607588 886330 ufaA1 Rv0447c COG2230M +hypothetical protein Rv0448c 536504 537169 - 221 15607589 886328 - Rv0448c COG3496S +hypothetical protein Rv0449c 537229 538548 - 439 15607590 886326 - Rv0449c COG2907R +PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 538588 541491 - 967 15607591 886323 mmpL4 Rv0450c COG2409R +PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 541488 541910 - 140 15607592 886321 mmpS4 Rv0451c - +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 542142 542852 + 236 15607593 886319 - Rv0452 COG1309K +PPE FAMILY PROTEIN 543174 544730 + 518 57116732 886317 PPE11 Rv0453 - +hypothetical protein Rv0454 544835 545185 + 116 15607595 886339 - Rv0454 COG0009J +hypothetical protein Rv0455c 545375 545821 - 148 15607596 886314 - Rv0455c - +enoyl-CoA hydratase 545889 546803 - 304 15607597 886312 echA2 Rv0456c COG1024I +hypothetical protein Rv0456A 547076 547357 - 93 57116733 3205039 - Rv0456A COG2337T +PROBABLE PEPTIDASE 547586 549607 - 673 15607598 886310 - Rv0457c COG1505E +PROBABLE ALDEHYDE DEHYDROGENASE 549675 551198 + 507 15607599 886306 - Rv0458 COG1012C +hypothetical protein Rv0459 551198 551689 + 163 15607600 886372 - Rv0459 COG3564S +CONSERVED HYDROPHOBIC PROTEIN 551749 551988 + 79 15607601 886304 - Rv0460 - +PROBABLE TRANSMEMBRANE PROTEIN 552026 552550 + 174 15607602 886302 - Rv0461 - +dihydrolipoamide dehydrogenase 552614 554008 + 464 15607603 886300 lpd Rv0462 COG1249C +PROBABLE CONSERVED MEMBRANE PROTEIN 554016 554309 + 97 15607604 886299 - Rv0463 - +hypothetical protein Rv0464c 554313 554885 - 190 15607605 886296 - Rv0464c COG2128S +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 554882 556306 - 474 15607606 886320 - Rv0465c COG1396K, COG3800R +hypothetical protein Rv0466 556458 557252 + 264 15607607 886294 - Rv0466 COG3884I +isocitrate lyase 557527 558813 + 428 57116734 886291 icl Rv0467 COG2224C +3-hydroxybutyryl-CoA dehydrogenase 558895 559755 + 286 15607609 886288 fadB2 Rv0468 COG1250I +POSSIBLE MYCOLIC ACID SYNTHASE UMAA 559888 560748 + 286 57116735 886286 umaA Rv0469 COG2230M +MYCOLIC ACID SYNTHASE PCAA (CYCLOPROPANE SYNTHASE) 560848 561711 - 287 57116736 886284 pcaA Rv0470c COG2230M +hypothetical protein Rv0470A 561854 562294 - 146 57116737 3205059 - Rv0470A COG1575H +hypothetical protein Rv0471c 562225 562713 - 162 15607612 886280 - Rv0471c - +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 562723 563427 - 234 15607613 886308 - Rv0472c COG1309K +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 563564 564934 + 456 15607614 886279 - Rv0473 COG2733S +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 565021 565443 + 140 15607615 886276 - Rv0474 COG1396K +IRON-REGULATED HEPARIN BINDING HEMAGGLUTININ HBHA (ADHESIN) 565797 566396 + 199 15607616 886272 hbhA Rv0475 - +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 566508 566771 + 87 15607617 886282 - Rv0476 - +POSSIBLE CONSERVED SECRETED PROTEIN 566776 567222 + 148 15607618 886273 - Rv0477 - +deoxyribose-phosphate aldolase 567222 567896 + 224 15607619 888425 deoC Rv0478 COG0274F +PROBABLE CONSERVED MEMBRANE PROTEIN 567921 568967 - 348 15607620 885535 - Rv0479c - +POSSIBLE AMIDOHYDROLASE 568964 569806 - 280 57116738 887163 - Rv0480c COG0388R +hypothetical protein Rv0481c 569988 570512 - 174 15607622 887161 - Rv0481c - +UDP-N-acetylenolpyruvoylglucosamine reductase 570539 571648 + 369 15607623 887169 murB Rv0482 COG0812M +PROBABLE CONSERVED LIPOPROTEIN LPRQ 571710 573065 + 451 15607624 887167 lprQ Rv0483 COG1376S +PROBABLE SHORT-CHAIN TYPE OXIDOREDUCTASE 573046 573801 - 251 15607625 887158 - Rv0484c COG4221R +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 573984 575300 + 438 15607626 887170 - Rv0485 COG1940KG +MANNOSYLTRANSFERASE 575348 576790 + 480 15607627 887160 - Rv0486 COG0438M +hypothetical protein Rv0487 576787 577338 + 183 15607628 887162 - Rv0487 - +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 577664 578269 + 201 15607629 887171 - Rv0488 COG1279R +phosphoglyceromutase 578426 579175 + 249 57116739 887183 gpm1 Rv0489 COG0588G +PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 579349 580581 + 410 15607631 887185 senX3 Rv0490 COG0642T +TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) 580809 581492 + 227 15607632 887195 regX3 Rv0491 COG0745TK +PROBABLE OXIDOREDUCTASE GMC-TYPE 581489 583378 - 629 57116740 887199 - Rv0492c COG2303E +hypothetical protein Rv0492A 583375 583704 - 109 57116741 3205069 - Rv0492A - +hypothetical protein Rv0493c 583701 584690 - 329 15607634 887200 - Rv0493c - +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 584695 585423 + 242 57116742 887166 - Rv0494 COG2186K +hypothetical protein Rv0495c 585424 586314 - 296 15607636 887198 - Rv0495c - +hypothetical protein Rv0496 586394 587380 + 328 15607637 887234 - Rv0496 COG0248FP +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 587377 588309 + 310 15607638 887240 - Rv0497 - +hypothetical protein Rv0498 588325 589167 + 280 15607639 887238 - Rv0498 COG1082G +hypothetical protein Rv0499 589183 590058 + 291 15607640 887243 - Rv0499 COG1155C +pyrroline-5-carboxylate reductase 590083 590970 + 295 15607641 887256 proC Rv0500 COG0345E +hypothetical protein Rv0500A 591111 591347 + 78 57116743 3205035 - Rv0500A COG1910P +hypothetical protein Rv0500B 591475 591576 + 33 57116744 3205036 - Rv0500B - +POSSIBLE UDP-GLUCOSE 4-EPIMERASE GALE2 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 591654 592784 + 376 57116745 887228 galE2 Rv0501 COG0451MG +hypothetical protein Rv0502 592791 593867 + 358 15607643 887260 - Rv0502 COG0204I +CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 2 CMAA2 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 2) (MYCOLIC ACID TRANS-CYCLOPROPANE SYNTHETASE) 593871 594779 - 302 15607644 887264 cmaA2 Rv0503c COG2230M +hypothetical protein Rv0504c 594802 595302 - 166 15607645 887268 - Rv0504c - +POSSIBLE PHOSPHOSERINE PHOSPHATASE SERB1 (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) 595464 596585 - 373 57116746 887270 serB1 Rv0505c COG0560E +PROBABLE CONSERVED MEMBRANE PROTEIN MMPS2 596759 597202 + 147 15607647 887279 mmpS2 Rv0506 - +PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL2 597199 600105 + 968 15607648 887248 mmpL2 Rv0507 COG2409R +hypothetical protein Rv0508 600098 600391 + 97 15607649 887301 - Rv0508 COG0526OC +glutamyl-tRNA reductase 600441 601847 + 468 15607650 887292 hemA Rv0509 COG0373H +porphobilinogen deaminase 601857 602786 + 309 15607651 887306 hemC Rv0510 COG0181H +PROBABLE UROPORPHYRIN-III C-METHYLTRANSFERASE HEMD (UROPORPHYRINOGEN III METHYLASE) (UROGEN III METHYLASE) (SUMT) (UROGEN III METHYLASE) (UROM) 602819 604516 + 565 57116747 887280 hemD Rv0511 COG0007H, COG1587H +delta-aminolevulinic acid dehydratase 604602 605591 + 329 15607653 887312 hemB Rv0512 COG0113H +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 605604 606152 + 182 15607654 887307 - Rv0513 - +POSSIBLE TRANSMEMBRANE PROTEIN 606149 606448 + 99 15607655 887319 - Rv0514 - +CONSERVED 13E12 REPEAT FAMILY PROTEIN 606551 608062 + 503 15607656 887322 - Rv0515 - +hypothetical protein Rv0516c 608059 608535 - 158 15607657 887324 - Rv0516c COG1366T +POSSIBLE MEMBRANE ACYLTRANSFERASE 608746 610056 + 436 15607658 887323 - Rv0517 COG1835I +POSSIBLE EXPORTED PROTEIN 610188 610883 + 231 15607659 887321 - Rv0518 COG0443O +POSSIBLE CONSERVED MEMBRANE PROTEIN 611172 612074 - 300 15607660 887334 - Rv0519c COG0627R +POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 612255 612605 + 116 15607661 887331 - Rv0520 COG0500QR +POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) 612598 612903 + 101 57116748 3205045 - Rv0521 - +PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) 613038 614342 + 434 57116749 886261 gabP Rv0522 COG1113E +hypothetical protein Rv0523c 614326 614721 - 131 15607663 887341 - Rv0523c - +glutamate-1-semialdehyde aminotransferase 614835 616223 + 462 15607664 887349 hemL Rv0524 COG0001H +hypothetical protein Rv0525 616223 616831 + 202 15607665 887358 - Rv0525 COG0406G +POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) 616846 617496 + 216 15607666 887339 - Rv0526 COG0526OC +POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA 617493 618272 + 259 57116750 887362 ccdA Rv0527 COG0785O +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 618305 619894 + 529 15607668 887372 - Rv0528 COG1333O +POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCSA 619891 620865 + 324 57116751 887380 ccsA Rv0529 COG0755O +hypothetical protein Rv0530 620907 622124 + 405 15607670 887385 - Rv0530 COG0455D +POSSIBLE CONSERVED MEMBRANE PROTEIN 622329 622646 + 105 15607671 887376 - Rv0531 - +PE-PGRS FAMILY PROTEIN 622793 624577 + 594 57116752 887391 PE_PGRS6 Rv0532 - +3-oxoacyl-(acyl carrier protein) synthase III 624473 625480 - 335 15607673 887381 fabH Rv0533c COG0332I +1,4-dihydroxy-2-naphthoate octaprenyltransferase 625562 626440 - 292 15607674 887408 menA Rv0534c COG1575H +5'-methylthioadenosine phosphorylase 626457 627251 + 264 15607675 887430 pnp Rv0535 COG0005F +PROBABLE UDP-GLUCOSE 4-EPIMERASE GALE3 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) 627248 628288 + 346 57116753 887457 galE3 Rv0536 COG0451MG +PROBABLE INTEGRAL MEMBRANE PROTEIN 628298 629731 - 477 15607677 887465 - Rv0537c - +POSSIBLE CONSERVED MEMBRANE PROTEIN 630040 631686 + 548 15607678 887473 - Rv0538 - +PROBABLE DOLICHYL-PHOSPHATE SUGAR SYNTHASE (DOLICHOL-PHOSPHATE SUGAR SYNTHETASE) (DOLICHOL-PHOSPHATE SUGAR TRANSFERASE) (SUGAR PHOSPHORYLDOLICHOL SYNTHASE) 631743 632375 + 210 15607679 887476 - Rv0539 COG0463M +hypothetical protein Rv0540 632372 633034 + 220 15607680 887489 - Rv0540 COG3222S +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 633055 634404 - 449 15607681 887416 - Rv0541c - +O-succinylbenzoic acid--CoA ligase 634416 635504 - 362 15607682 887507 menE Rv0542c COG0318IQ +hypothetical protein Rv0543c 635573 635875 - 100 15607683 887494 - Rv0543c - +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 635935 636213 - 92 15607684 887511 - Rv0544c - +PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER INTEGRAL MEMBRANE PROTEIN PITA 636210 637463 - 417 15607685 887517 pitA Rv0545c COG0306P +hypothetical protein Rv0546c 637583 637969 - 128 15607686 887509 - Rv0546c COG0346E +short chain dehydrogenase 638032 638916 - 294 15607687 887527 - Rv0547c COG1028IQR +naphthoate synthase 639012 639956 - 314 15607688 887529 menB Rv0548c COG0447H +hypothetical protein Rv0549c 640228 640641 - 137 15607689 887534 - Rv0549c COG4113R +hypothetical protein Rv0550c 640638 640904 - 88 15607690 887515 - Rv0550c COG5302R +acyl-CoA synthetase 641096 642811 - 571 15607691 887526 fadD8 Rv0551c COG0318IQ +hypothetical protein Rv0552 642889 644493 + 534 15607692 887537 - Rv0552 COG1574R +O-succinylbenzoate synthase 644490 645470 + 326 15607693 887544 menC Rv0553 COG4948MR +POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) 645467 646255 + 262 15607694 887535 bpoC Rv0554 COG0596R +2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 646298 647962 + 554 15607695 887554 menD Rv0555 COG1165H +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 647959 648474 + 171 15607696 887551 - Rv0556 - +MANNOSYLTRANSFERASE PIMB 648536 649672 + 378 15607697 887609 pimB Rv0557 COG0438M +ubiquinone/menaquinone biosynthesis methyltransferase 649689 650393 + 234 57116754 887591 ubiE Rv0558 COG2226H +POSSIBLE CONSERVED SECRETED PROTEIN 650407 650745 - 112 15607699 887569 - Rv0559c - +POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) 650779 651504 - 241 15607700 887637 - Rv0560c COG0500QR +POSSIBLE OXIDOREDUCTASE 651529 652755 - 408 15607701 887638 - Rv0561c COG0644C +PROBABLE POLYPRENYL-DIPHOSPHATE SYNTHASE GRCC1 (POLYPRENYL PYROPHOSPHATE SYNTHETASE) 652771 653778 + 335 15607702 887647 grcC1 Rv0562 COG0142H +heat shock protein HtpX 653879 654739 + 286 15607703 887649 htpX Rv0563 COG0501O +NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 654924 655949 - 341 15607704 887651 gpsA Rv0564c COG0240C +PROBABLE MONOOXYGENASE 656010 657470 - 486 15607705 887662 - Rv0565c COG2072P +nucleotide-binding protein 657548 658039 - 163 15607706 887633 - Rv0566c COG1666S +PROBABLE METHYLTRANSFERASE/METHYLASE 658321 659340 + 339 15607707 887667 - Rv0567 COG0500QR +POSSIBLE CYTOCHROME P450 135B1 CYP135B1 659450 660868 + 472 15607708 887654 cyp135B1 Rv0568 COG2124Q +hypothetical protein Rv0569 661003 661269 + 88 15607709 887678 - Rv0569 - +PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) 661295 663373 + 692 15607710 887666 nrdZ Rv0570 COG0209F +hypothetical protein Rv0571c 663487 664818 - 443 15607711 887710 - Rv0571c COG0596R, COG1926R, COG2267I +hypothetical protein Rv0572c 665042 665383 - 113 15607712 887696 - Rv0572c - +nicotinate phosphoribosyltransferase 665851 667242 - 463 15607713 887716 - Rv0573c COG1488H +hypothetical protein Rv0574c 667252 668394 - 380 15607714 887721 - Rv0574c COG2843M +hypothetical protein Rv0575c 668579 669745 - 388 15607715 887720 - Rv0575c COG0654HC +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) 669848 671152 + 434 15607716 887717 - Rv0576 COG0640K, COG3832S +hypothetical protein Rv0577 671166 671951 + 261 15607717 887732 TB27.3 Rv0577 COG3324R +PE-PGRS FAMILY PROTEIN 671996 675916 - 1306 57116755 887725 PE_PGRS7 Rv0578c - +hypothetical protein Rv0579 676238 676996 + 252 15607719 887738 - Rv0579 COG1656S +hypothetical protein Rv0580c 677125 677616 - 163 15607720 887712 - Rv0580c - +hypothetical protein Rv0581 677710 677925 + 71 15607721 887739 - Rv0581 - +hypothetical protein Rv0582 677922 678329 + 135 15607722 887747 - Rv0582 COG2402R +PROBABLE CONSERVED LIPOPROTEIN LPQN 678389 679075 - 228 15607723 887733 lpqN Rv0583c - +POSSIBLE CONSERVED EXPORTED PROTEIN 679229 681862 + 877 15607724 887752 - Rv0584 COG3537G +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 681885 684272 - 795 15607725 887753 - Rv0585c COG0392S, COG3642T +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (GNTR-FAMILY) 684410 685132 + 240 15607726 887754 - Rv0586 COG2186K +CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2A 685129 685926 + 265 15607727 887755 yrbE2A Rv0587 COG0767Q +CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2B 685928 686815 + 295 15607728 887761 yrbE2B Rv0588 COG0767Q +MCE-FAMILY PROTEIN MCE2A 686821 688035 + 404 57116756 887745 mce2A Rv0589 COG1463Q +MCE-FAMILY PROTEIN MCE2B 688032 688859 + 275 15607730 887771 mce2B Rv0590 COG1463Q +MCE-FAMILY RELATED PROTEIN 688808 689062 + 84 57116757 3205078 - Rv0590A - +MCE-FAMILY PROTEIN MCE2C 689059 690504 + 481 15607731 887770 mce2C Rv0591 COG1463Q +MCE-FAMILY PROTEIN MCE2D 690501 692027 + 508 15607732 887786 mce2D Rv0592 COG1463Q +POSSIBLE MCE-FAMILY LIPOPROTEIN LPRL (MCE-FAMILY LIPOPROTEIN MCE2E) 692024 693232 + 402 15607733 887829 lprL Rv0593 COG1463Q +MCE-FAMILY PROTEIN MCE2F 693237 694787 + 516 15607734 887797 mce2F Rv0594 COG1463Q +hypothetical protein Rv0595c 694839 695231 - 130 15607735 887835 - Rv0595c COG1487R +hypothetical protein Rv0596c 695228 695485 - 85 15607736 887846 - Rv0596c COG4118D +hypothetical protein Rv0597c 695668 696903 - 411 15607737 887853 - Rv0597c COG1373R +hypothetical protein Rv0598c 697154 697567 - 137 15607738 887861 - Rv0598c - +hypothetical protein Rv0599c 697564 697800 - 78 15607739 887856 - Rv0599c COG2002K +PROBABLE TWO COMPONENT SENSOR KINASE -SECOND PART 697904 698410 - 168 57116758 887847 - Rv0600c COG0642T +PROBABLE TWO COMPONENT SENSOR KINASE -FIRST PART 698524 698994 - 156 15607741 887868 - Rv0601c COG0642T +PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA 699038 699799 - 253 15607742 887870 tcrA Rv0602c COG0745TK +POSSIBLE EXPORTED PROTEIN 699856 700167 + 103 15607743 887863 - Rv0603 - +PROBABLE CONSERVED LIPOPROTEIN LPQO 700239 701189 + 316 15607744 887879 lpqO Rv0604 - +POSSIBLE RESOLVASE 701406 702014 + 202 15607745 887872 - Rv0605 COG2452L +POSSIBLE TRANSPOSASE (FRAGMENT) 702016 702759 + 247 15607746 887889 - Rv0606 COG0675L +hypothetical protein Rv0607 702813 703199 + 128 15607747 887883 - Rv0607 - +hypothetical protein Rv0608 703244 703489 + 81 15607748 887895 - Rv0608 COG4423S +hypothetical protein Rv0609 703486 703887 + 133 15607749 887896 - Rv0609 COG3742S +hypothetical protein Rv0609A 703830 704057 + 75 57116759 3205046 - Rv0609A - +hypothetical protein Rv0610c 704752 705909 - 385 15607750 887890 - Rv0610c - +hypothetical protein Rv0611c 705961 706344 - 127 15607751 887906 - Rv0611c - +hypothetical protein Rv0612 706324 706929 + 201 15607752 887908 - Rv0612 - +hypothetical protein Rv0613c 706948 709515 - 855 15607753 887913 - Rv0613c COG0653U +hypothetical protein Rv0614 709356 710348 + 330 15607754 887914 - Rv0614 - +PROBABLE INTEGRAL MEMBRANE PROTEIN 710345 710587 + 80 15607755 887920 - Rv0615 - +hypothetical protein Rv0616c 710584 710850 - 88 15607756 887921 - Rv0616c - +hypothetical protein Rv0617 711006 711407 + 133 15607757 887926 - Rv0617 COG1848R +PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTA 711536 712231 + 231 57116760 887932 galTa Rv0618 COG1085C +PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTB 712174 712719 + 181 57116761 887943 galTb Rv0619 COG1085C +galactokinase 712716 713807 + 363 15607760 887936 galK Rv0620 COG0153G +POSSIBLE MEMBRANE PROTEIN 714202 715266 + 354 15607761 887901 - Rv0621 COG0120G +POSSIBLE MEMBRANE PROTEIN 715370 716317 + 315 57116762 887942 - Rv0622 - +hypothetical protein Rv0623 716410 716664 + 84 15607763 887970 - Rv0623 COG4423S +hypothetical protein Rv0624 716664 717059 + 131 15607764 887951 - Rv0624 COG3742S +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 717153 717893 - 246 15607765 887967 - Rv0625c COG0398S +hypothetical protein Rv0626 718025 718285 + 86 15607766 887996 - Rv0626 COG4118D +hypothetical protein Rv0627 718282 718689 + 135 15607767 887991 - Rv0627 COG1487R +hypothetical protein Rv0628c 718761 719912 - 383 15607768 887986 - Rv0628c COG4398S +PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 720005 721732 - 575 15607769 887999 recD Rv0629c COG0507L +PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) 721729 725013 - 1094 15607770 888004 recB Rv0630c COG0210L, COG1074L +PROBABLE EXONUCLEASE V (GAMMA CHAIN) RECC (EXODEOXYRIBONUCLEASE V GAMMA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) 725013 728306 - 1097 15607771 888008 recC Rv0631c COG1330L +enoyl-CoA hydratase 728583 729278 - 231 15607772 888015 echA3 Rv0632c COG1024I +POSSIBLE EXPORTED PROTEIN 729327 730166 - 279 15607773 888001 - Rv0633c - +POSSIBLE GLYOXALASE II (HYDROXYACYLGLUTATHIONE HYDROLASE) (GLX II) 730320 731033 - 237 15607774 888016 - Rv0634c COG0491R +hypothetical protein Rv0634A 731113 731364 + 83 57116763 3205041 - Rv0634A - +50S ribosomal protein L33 731712 731879 + 55 57116764 3205042 rpmG Rv0634B COG0267J +hypothetical protein Rv0635 731930 732406 + 158 15607775 888032 - Rv0635 - +hypothetical protein Rv0636 732393 732821 + 142 15607776 888031 - Rv0636 COG2030I +hypothetical protein Rv0637 732825 733325 + 166 15607777 888019 - Rv0637 - +preprotein translocase subunit SecE 733737 734222 + 161 57116765 888042 secE Rv0638 COG0690U +transcription antitermination protein NusG 734254 734970 + 238 15607779 888039 nusG Rv0639 COG0250K +50S ribosomal protein L11 735022 735450 + 142 15607780 888045 rplK Rv0640 COG0080J +50S ribosomal protein L1 735517 736224 + 235 15607781 888043 rplA Rv0641 COG0081J +METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) 736298 737203 - 301 15607782 888056 mmaA4 Rv0642c COG2230M +METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) 737268 738149 - 293 15607783 888058 mmaA3 Rv0643c COG2230M +METHOXY MYCOLIC ACID SYNTHASE 2 MMAA2 (METHYL MYCOLIC ACID SYNTHASE 2) (MMA2) (HYDROXY MYCOLIC ACID SYNTHASE) 738297 739160 - 287 15607784 888061 mmaA2 Rv0644c COG2230M +METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE) 739327 740187 - 286 15607785 888060 mmaA1 Rv0645c COG2230M +PROBABLE LIPASE/ESTERASE LIPG 740234 741139 - 301 15607786 888065 lipG Rv0646c COG0596R +hypothetical protein Rv0647c 741151 742617 - 488 15607787 888070 - Rv0647c COG0661R +ALPHA-MANNOSIDASE 742719 746366 + 1215 15607788 888048 - Rv0648 COG0383G +POSSIBLE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE FABD2 (MCT) 746363 747037 + 224 57116766 888079 fabD2 Rv0649 - +POSSIBLE SUGAR KINASE 747037 747945 + 302 15607790 888082 - Rv0650 COG1940KG +50S ribosomal protein L10 748276 748812 + 178 15607791 888049 rplJ Rv0651 COG0244J +50S ribosomal protein L7/L12 748849 749241 + 130 15607792 888078 rplL Rv0652 COG0222J +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) 749234 749929 - 231 15607793 888087 - Rv0653c COG1309K +PROBABLE DIOXYGENASE 750000 751505 + 501 15607794 888089 - Rv0654 COG3670Q +POSSIBLE RIBONUCLEOTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER MKL 751517 752596 + 359 15607795 888081 mkl Rv0655 COG1127Q +hypothetical protein Rv0656c 752984 753367 - 127 15607796 888106 - Rv0656c - +hypothetical protein Rv0657c 753462 753617 - 51 15607797 888077 - Rv0657c COG5450K +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 753693 754409 - 238 15607798 888102 - Rv0658c COG1266R +hypothetical protein Rv0659c 754685 754993 - 102 15607799 888134 - Rv0659c COG2337T +hypothetical protein Rv0660c 754980 755225 - 81 15607800 888141 - Rv0660c - +hypothetical protein Rv0661c 755335 755772 - 145 15607801 888143 - Rv0661c - +hypothetical protein Rv0662c 755769 756137 - 122 15607802 888117 - Rv0662c - +POSSIBLE ARYLSULFATASE ATSD (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 756137 758500 + 787 15607803 888144 atsD Rv0663 COG3119P +hypothetical protein Rv0664 758532 758804 + 90 15607804 888146 - Rv0664 - +hypothetical protein Rv0665 758801 759139 + 112 15607805 888149 - Rv0665 - +POSSIBLE MEMBRANE PROTEIN 759136 759309 + 57 15607806 888158 - Rv0666 - +DNA-directed RNA polymerase subunit beta 759807 763325 + 1172 15607807 888164 rpoB Rv0667 COG0085K +DNA-directed RNA polymerase subunit beta' 763370 767320 + 1316 15607808 888177 rpoC Rv0668 COG0086K +POSSIBLE HYDROLASE 767684 769597 - 637 15607809 888181 - Rv0669c - +endonuclease IV 769792 770550 + 252 15607810 888190 end Rv0670 COG0648L +POSSIBLE CONSERVED LIPOPROTEIN LPQP 770582 771424 + 280 15607811 888194 lpqP Rv0671 COG3509Q +PROBABLE ACYL-CoA DEHYDROGENASE FADE8 771484 773112 + 542 15607812 888198 fadE8 Rv0672 COG1960I +enoyl-CoA hydratase 773123 774061 + 312 15607813 888175 echA4 Rv0673 COG1024I +hypothetical protein Rv0674 774064 774786 + 240 15607814 888203 - Rv0674 COG3327K +enoyl-CoA hydratase 774783 775574 + 263 57116767 888222 echA5 Rv0675 COG1024I +PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL5 775586 778480 - 964 15607816 888219 mmpL5 Rv0676c COG2409R +POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 778477 778905 - 142 15607817 888233 mmpS5 Rv0677c COG1138O +hypothetical protein Rv0678 778990 779487 + 165 15607818 888235 - Rv0678 - +CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN 779543 780040 - 165 15607819 888230 - Rv0679c - +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 780042 780416 - 124 15607820 888229 - Rv0680c - +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 780721 781311 + 196 15607821 888239 - Rv0681 COG1309K +30S ribosomal protein S12 781560 781934 + 124 15607822 888259 rpsL Rv0682 COG0048J +30S ribosomal protein S7 781934 782404 + 156 15607823 888245 rpsG Rv0683 COG0049J +elongation factor G 782485 784590 + 701 57116768 888240 fusA1 Rv0684 COG0480J +elongation factor Tu 784821 786011 + 396 15607825 888262 tuf Rv0685 COG0050J +PROBABLE MEMBRANE PROTEIN 786149 786946 + 265 15607826 888271 - Rv0686 - +3-ketoacyl-(acyl-carrier-protein) reductase 787099 787926 + 275 15607827 888279 fabG Rv0687 COG1028IQR +PUTATIVE FERREDOXIN REDUCTASE 787940 789160 + 406 15607828 888280 - Rv0688 COG0446R +hypothetical protein Rv0689c 789157 789411 - 84 15607829 888283 - Rv0689c - +hypothetical protein Rv0690c 790024 791073 - 349 15607830 888292 - Rv0690c COG4427S +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 791070 791666 - 198 15607831 888296 - Rv0691c COG1309K +hypothetical protein Rv0692 791831 792160 + 109 15607832 888285 - Rv0692 - +PROBABLE COENZYME PQQ SYNTHESIS PROTEIN E PQQE (COENZYME PQQ SYNTHESIS PROTEIN III) 792157 793332 + 391 15607833 888302 pqqE Rv0693 COG0535R +POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD1 793335 794525 + 396 15607834 888310 lldD1 Rv0694 COG1304C +hypothetical protein Rv0695 794715 795470 + 251 15607835 888314 - Rv0695 COG1402R +PROBABLE MEMBRANE SUGAR TRANSFERASE 795519 796931 + 470 15607836 888307 - Rv0696 COG0463M +PROBABLE DEHYDROGENASE 796933 798372 + 479 15607837 888316 - Rv0697 COG2303E +hypothetical protein Rv0698 798833 799444 + 203 15607838 888327 - Rv0698 - +hypothetical protein Rv0699 799629 799850 + 73 15607839 888335 - Rv0699 - +30S ribosomal protein S10 800487 800792 + 101 15607840 888331 rpsJ Rv0700 COG0051J +50S ribosomal protein L3 800809 801462 + 217 15607841 888343 rplC Rv0701 COG0087J +50S ribosomal protein L4 801462 802133 + 223 15607842 888345 rplD Rv0702 COG0088J +50S ribosomal protein L23 802133 802435 + 100 15607843 888353 rplW Rv0703 COG0089J +50S ribosomal protein L2 802528 803370 + 280 15607844 888341 rplB Rv0704 COG0090J +30S ribosomal protein S19 803411 803692 + 93 15607845 888356 rpsS Rv0705 COG0185J +50S ribosomal protein L22 803689 804282 + 197 15607846 888359 rplV Rv0706 COG0091J +30S ribosomal protein S3 804282 805106 + 274 15607847 888357 rpsC Rv0707 COG0092J +50S ribosomal protein L16 805110 805526 + 138 15607848 888377 rplP Rv0708 COG0197J +50S ribosomal protein L29 805526 805759 + 77 15607849 888374 rpmC Rv0709 COG0255J +30S ribosomal protein S17 805756 806166 + 136 15607850 888391 rpsQ Rv0710 COG0186J +POSSIBLE ARYLSULFATASE ATSA (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) 806335 808698 + 787 15607851 888394 atsA Rv0711 COG3119P +hypothetical protein Rv0712 808746 809645 + 299 15607852 888346 - Rv0712 COG1262S +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 809946 810887 + 313 15607853 888405 - Rv0713 - +50S ribosomal protein L14 811373 811741 + 122 15607854 888411 rplN Rv0714 COG0093J +50S ribosomal protein L24 811742 812059 + 105 15607855 888421 rplX Rv0715 COG0198J +50S ribosomal protein L5 812059 812622 + 187 15607856 888400 rplE Rv0716 COG0094J +30S ribosomal protein S14 812627 812812 + 61 57116769 888414 rpsN Rv0717 COG0199J +30S ribosomal protein S8 812976 813374 + 132 15607858 888424 rpsH Rv0718 COG0096J +50S ribosomal protein L6 813398 813937 + 179 15607859 888433 rplF Rv0719 COG0097J +50S ribosomal protein L18 813940 814308 + 122 15607860 888457 rplR Rv0720 COG0256J +30S ribosomal protein S5 814328 814990 + 220 15607861 888465 rpsE Rv0721 COG0098J +50S ribosomal protein L30 814993 815190 + 65 15607862 888505 rpmD Rv0722 COG1841J +50S ribosomal protein L15 815190 815630 + 146 15607863 888531 rplO Rv0723 COG0200J +POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) 815663 817534 + 623 15607864 888535 sppA Rv0724 COG0616OU +hypothetical protein Rv0724A 817531 817866 - 111 57116770 3205058 - Rv0724A - +hypothetical protein Rv0725c 817539 818444 - 301 15607865 888447 - Rv0725c COG3315Q +hypothetical protein Rv0726c 818537 819640 - 367 15607866 888552 - Rv0726c COG3315Q +L-fuculose-phosphate aldolase 819843 820499 - 218 15607867 888550 fucA Rv0727c COG0235G +POSSIBLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA2 (PHOSPHOGLYCERATE DEHYDROGENASE) (PGDH) 820496 821476 - 326 15607868 888555 serA2 Rv0728c COG0111HE +POSSIBLE D-XYLULOSE KINASE XYLB (XYLULOKINASE) (XYLULOSE KINASE) 821507 822853 + 448 15607869 888548 xylB Rv0729 COG1070G +hypothetical protein Rv0730 822866 823594 + 242 15607870 888558 - Rv0730 - +hypothetical protein Rv0731c 823683 824639 - 318 15607871 888556 - Rv0731c COG3315Q +preprotein translocase subunit SecY 824800 826125 + 441 15607872 888559 secY Rv0732 COG0201U +adenylate kinase 826122 826667 + 181 15607873 888567 adk Rv0733 COG0563F +methionine aminopeptidase 826670 827470 + 266 57116771 888564 mapA Rv0734 COG0024J +RNA polymerase sigma factor SigL 827543 828076 + 177 15607875 888609 sigL Rv0735 COG1595K +PROBABLE CONSERVED MEMBRANE PROTEIN 828140 828892 + 250 15607876 888611 - Rv0736 COG5662K +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 829207 829704 + 165 15607877 888619 - Rv0737 COG1846K +hypothetical protein Rv0738 830062 830610 + 182 15607878 888620 - Rv0738 - +hypothetical protein Rv0739 830855 831661 + 268 15607879 888622 - Rv0739 - +hypothetical protein Rv0740 831776 832303 + 175 15607880 888638 - Rv0740 - +PROBABLE TRANSPOSASE (FRAGMENT) 832534 832848 + 104 15607881 888644 - Rv0741 COG3464L +PE-PGRS FAMILY PROTEIN 832981 833508 + 175 57116772 888645 PE_PGRS8 Rv0742 - +hypothetical protein Rv0743c 833886 834443 - 185 15607883 888641 - Rv0743c - +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 834440 834946 - 168 15607884 888648 - Rv0744c - +hypothetical protein Rv0745 835154 835681 + 175 15607885 888595 - Rv0745 - +PE-PGRS FAMILY PROTEIN 835701 838052 + 783 57116773 888664 PE_PGRS9 Rv0746 - +PE-PGRS FAMILY PROTEIN 838451 840856 + 801 57116774 888662 PE_PGRS10 Rv0747 - +hypothetical protein Rv0748 840947 841204 + 85 15607888 888682 - Rv0748 - +hypothetical protein Rv0749 841228 841656 + 142 15607889 888681 - Rv0749 - +hypothetical protein Rv0749A 841737 841874 - 45 57116775 3205052 - Rv0749A - +hypothetical protein Rv0750 842033 842278 + 81 15607890 888688 - Rv0750 - +PROBABLE 3-HYDROXYISOBUTYRATE DEHYDROGENASE MMSB (HIBADH) 842347 843231 - 294 15607891 888658 mmsB Rv0751c COG2084I +PROBABLE ACYL-CoA DEHYDROGENASE FADE9 843242 844414 - 390 15607892 888684 fadE9 Rv0752c COG1960I +PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) 844421 845953 - 510 15607893 888707 mmsA Rv0753c COG1012C +PE-PGRS FAMILY PROTEIN 846159 847913 + 584 57116776 888695 PE_PGRS11 Rv0754 COG0406G +PPE FAMILY PROTEIN 848103 850040 - 645 57116777 888708 PPE12 Rv0755c - +PUTATIVE TRANSPOSASE (FRAGMENT) 850342 850527 - 61 57116778 3205072 - Rv0755A COG3415L +hypothetical protein Rv0756c 850741 851466 - 241 15607896 888730 - Rv0756c COG0108H +POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP 851608 852351 + 247 15607897 888772 phoP Rv0757 COG0745TK +POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE ASSOCIATED PHOR 852396 853853 + 485 15607898 888775 phoR Rv0758 COG0642T +hypothetical protein Rv0759c 853825 854157 - 110 15607899 888776 - Rv0759c COG0537FGR +hypothetical protein Rv0760c 854267 854686 - 139 15607900 888784 - Rv0760c - +POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB 854699 855826 - 375 57116779 888738 adhB Rv0761c COG1062C +hypothetical protein Rv0762c 855925 856470 - 181 15607902 888807 - Rv0762c - +POSSIBLE FERREDOXIN 856473 856679 - 68 15607903 888814 - Rv0763c COG1141C +CYTOCHROME P450 51 CYP51 (CYPL1) (P450-L1A1) (STEROL 14-ALPHA DEMETHYLASE) (LANOSTEROL 14-ALPHA DEMETHYLASE) (P450-14DM) 856682 858037 - 451 15607904 888819 cyp51 Rv0764c COG2124Q +short chain dehydrogenase 858037 858864 - 275 15607905 888793 - Rv0765c COG1028IQR +PROBABLE CYTOCHROME P450 123 CYP123 858864 860072 - 402 15607906 888834 cyp123 Rv0766c COG2124Q +hypothetical protein Rv0767c 860069 860710 - 213 15607907 888833 - Rv0767c - +PROBABLE ALDEHYDE DEHYDROGENASE NAD DEPENDENT ALDA (ALDEHYDE DEHYDROGENASE 860912 862381 + 489 15607908 888832 aldA Rv0768 COG1012C +short chain dehydrogenase 862412 863158 + 248 15607909 888837 - Rv0769 COG1028IQR +PROBABLE DEHYDROGENASE/REDUCTASE 863256 864143 + 295 15607910 888868 - Rv0770 COG2084I +POSSIBLE 4-CARBOXYMUCONOLACTONE DECARBOXYLASE (CMD) 864140 864574 + 144 15607911 888872 - Rv0771 COG0599S +phosphoribosylamine--glycine ligase 864586 865854 + 422 15607912 888873 purD Rv0772 COG0151F +PROBABLE BIFUNCTIONAL ACYLASE GGTA: CEPHALOSPORIN ACYLASE (GL-7ACA ACYLASE) + GAMMA-GLUTAMYLTRANSPEPTIDASE (GGT) 865851 867389 - 512 15607913 888893 ggtA Rv0773c COG0405E +PROBABLE CONSERVED EXPORTED PROTEIN 867440 868351 - 303 57116780 888895 - Rv0774c COG0627R +hypothetical protein Rv0775 868407 869030 + 207 15607915 888899 - Rv0775 COG3226S +hypothetical protein Rv0776c 868984 869763 - 259 15607916 888918 - Rv0776c COG4328S +adenylosuccinate lyase 870008 871426 + 472 15607917 888929 purB Rv0777 COG0015F +POSSIBLE CYTOCHROME P450 126 CYP126 871431 872675 + 414 15607918 888913 cyp126 Rv0778 COG2124Q +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 872672 873292 - 206 15607919 888941 - Rv0779c COG0841V +phosphoribosylaminoimidazole-succinocarboxamide synthase 873343 874236 + 297 15607920 888928 hemH Rv0780 COG0152F +PROBABLE PROTEASE II PTRBA 874233 874943 + 236 57116781 885840 ptrBa Rv0781 COG1770E +PROBABLE PROTEASE II PTRBB 874732 876390 + 552 57116782 885862 ptrBb Rv0782 COG1770E +POSSIBLE MULTIDRUG RESISTANCE INTEGRAL MEMBRANE EFFLUX PROTEIN EMRB 876818 878440 - 540 15607923 885836 emrB Rv0783c COG0477GEPR +hypothetical protein Rv0784 878638 879324 + 228 15607924 885863 - Rv0784 COG3233R +putative FAD-binding dehydrogenase 879340 881040 + 566 15607925 885864 - Rv0785 COG3573R +hypothetical protein Rv0786c 881075 881464 - 129 15607926 885615 - Rv0786c COG2220R +hypothetical protein Rv0787 881459 882418 + 319 15607927 885468 - Rv0787 COG0458EF +phosphoribosylformylglycinamidine synthase subunit PurS 882524 882763 + 79 57116783 886264 - Rv0787A COG1828F +phosphoribosylformylglycinamidine synthase subunit I 882760 883434 + 224 15607928 885181 purQ Rv0788 COG0047F +hypothetical protein Rv0789c 883451 884050 - 199 15607929 885153 - Rv0789c - +hypothetical protein Rv0790c 884072 884800 - 242 15607930 885253 - Rv0790c COG1305E +hypothetical protein Rv0791c 884797 885840 - 347 15607931 885273 - Rv0791c COG2141C +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 885837 886646 - 269 15607932 885142 - Rv0792c COG2188K +hypothetical protein Rv0793 886719 887024 + 101 15607933 885497 - Rv0793 COG1359S +PROBABLE OXIDOREDUCTASE 887137 888636 - 499 57116784 885076 - Rv0794c COG1249C +PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) 889072 889398 + 108 15607935 885454 - Rv0795 COG2963L +PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 889395 890333 + 312 15607936 885099 - Rv0796 COG2801L +IS1547 transposase 890388 891482 + 364 15607937 885476 - Rv0797 COG3547L +29 KDa ANTIGEN CFP29 891472 892269 - 265 15607938 885460 cfp29 Rv0798c COG1659S +hypothetical protein Rv0799c 892266 893273 - 335 15607939 885388 - Rv0799c COG2837P +putative aminopeptidase 2 893318 894619 + 433 15607940 885461 pepC Rv0800 COG1362E +hypothetical protein Rv0801 894631 894978 + 115 15607941 885376 - Rv0801 - +hypothetical protein Rv0802c 894972 895628 - 218 15607942 885332 - Rv0802c COG1670J +phosphoribosylformylglycinamidine synthase II 895820 898084 + 754 15607943 885358 purL Rv0803 COG0046F +hypothetical protein Rv0804 898081 898710 + 209 15607944 885330 - Rv0804 COG1266R +hypothetical protein Rv0805 898831 899787 + 318 15607945 885326 - Rv0805 COG1409R +POSSIBLE UDP-GLUCOSE-4-EPIMERASE CPSY (GALACTOWALDENASE) (UDP-GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE-4-EPIMERASE) 899732 901330 - 532 15607946 885243 cpsY Rv0806c - +hypothetical protein Rv0807 901635 902024 + 129 15607947 885272 - Rv0807 - +amidophosphoribosyltransferase 902111 903694 + 527 15607948 885085 purF Rv0808 COG0034F +phosphoribosylaminoimidazole synthetase 903725 904819 + 364 15607949 885134 purM Rv0809 COG0150F +hypothetical protein Rv0810c 904905 905087 - 60 15607950 885410 - Rv0810c - +hypothetical protein Rv0811c 905234 906340 - 368 15607951 885401 - Rv0811c COG0354R +4-amino-4-deoxychorismate lyase 906423 907292 + 289 57116785 885397 - Rv0812 COG0115EH +hypothetical protein Rv0813c 907338 908018 - 226 15607953 885395 - Rv0813c - +CONSERVED HYPOTHETICAL PROTEIN SSEC2 908181 908483 - 100 15607954 885435 sseC2 Rv0814c - +PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) 908485 909318 - 277 15607955 885449 cysA2 Rv0815c COG2897P +PROBABLE THIOREDOXIN THIX 909611 910033 - 140 15607956 885087 thiX Rv0816c COG0526OC +PROBABLE CONSERVED EXPORTED PROTEIN 910030 910842 - 270 15607957 885440 - Rv0817c - +TRANSCRIPTIONAL REGULATORY PROTEIN 910972 911739 + 255 15607958 885144 - Rv0818 COG0745TK +hypothetical protein Rv0819 911736 912683 + 315 15607959 885251 - Rv0819 COG0456R +PROBABLE PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PHOT 912726 913502 + 258 15607960 885136 phoT Rv0820 COG1117P +PROBABLE PHOSPHATE-TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PHOY2 913558 914199 - 213 15607961 885270 phoY2 Rv0821c COG0704P +hypothetical protein Rv0822c 914257 916311 - 684 15607962 885374 - Rv0822c COG1316K +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 916477 917646 - 389 15607963 885380 - Rv0823c COG0042J +PROBABLE ACYL- 917734 918750 - 338 57116786 885444 desA1 Rv0824c - +hypothetical protein Rv0825c 918912 919553 - 213 15607965 885354 - Rv0825c COG1309K +hypothetical protein Rv0826 919634 920689 + 351 15607966 885360 - Rv0826 COG3662S +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 920741 921133 - 130 15607967 885375 - Rv0827c COG0640K +POSSIBLE DEAMINASE 921191 921613 - 140 15607968 885265 - Rv0828c COG0590FJ +POSSIBLE TRANSPOSASE (FRAGMENT) 921575 921865 + 96 15607969 885403 - Rv0829 COG0675L +hypothetical protein Rv0830 921970 922875 + 301 15607970 885886 - Rv0830 COG3315Q +hypothetical protein Rv0831c 922894 923709 - 271 15607971 885349 - Rv0831c - +PE-PGRS FAMILY PROTEIN 924951 925364 + 137 57116787 885236 PE_PGRS12 Rv0832 - +PE-PGRS FAMILY PROTEIN 925361 927610 + 749 57116788 885391 PE_PGRS13 Rv0833 - +PE-PGRS FAMILY PROTEIN 927837 930485 - 882 57116789 885369 PE_PGRS14 Rv0834c - +POSSIBLE LIPOPROTEIN LPQQ 930953 931597 + 214 15607975 885883 lpqQ Rv0835 - +hypothetical protein Rv0836c 932279 932932 - 217 15607976 885356 - Rv0836c COG4849S +hypothetical protein Rv0837c 933003 934031 - 342 15607977 885109 - Rv0837c COG4861S +PROBABLE CONSERVED LIPOPROTEIN LPQR 934720 935490 + 256 15607978 885417 lpqR Rv0838 COG2173M +hypothetical protein Rv0839 935577 936389 + 270 15607979 885255 - Rv0839 COG0500QR +PROBABLE PROLINE IMINOPEPTIDASE PIP (PROLYL AMINOPEPTIDASE) (PAP) 936457 937317 - 286 15607980 885611 pip Rv0840c COG0596R +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 937593 937835 + 80 57116790 3205068 - Rv0841 COG0477GEPR +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 938112 939404 + 430 15607982 885616 - Rv0842 - +PROBABLE DEHYDROGENASE 939388 940392 + 334 15607983 885554 - Rv0843 COG1071C +POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL 940456 941106 - 216 15607984 885603 narL Rv0844c COG2197TK +POSSIBLE TWO COMPONENT SENSOR KINASE 941190 942467 + 425 15607985 885218 - Rv0845 COG4585T +PROBABLE OXIDASE 942680 944194 - 504 15607986 885207 - Rv0846c COG2132Q +PROBABLE LIPOPROTEIN LPQS 944343 944735 + 130 15607987 885051 lpqS Rv0847 - +POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) 944938 946056 + 372 57116791 885545 cysK2 Rv0848 COG0031E +PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN 946056 947315 + 419 15607989 885111 - Rv0849 COG0477GEPR +PUTATIVE TRANSPOSASE (FRAGMENT) 947312 947644 + 110 15607990 885054 - Rv0850 COG3464L +short chain dehydrogenase 947641 948468 - 275 15607991 885550 - Rv0851c COG1028IQR +POSSIBLE FATTY-ACID-CoA LIGASE FADD16 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 948559 949395 + 278 15607992 885044 fadD16 Rv0852 COG1022I +PROBABLE PYRUVATE OR INDOLE-3-PYRUVATE DECARBOXYLASE PDC 949436 951118 - 560 15607993 885576 pdc Rv0853c COG3961GHR +hypothetical protein Rv0854 951183 951626 + 147 15607994 885127 - Rv0854 COG0113H +PROBABLE FATTY-ACID-CoA RACEMASE FAR 951632 952711 + 359 15607995 885790 far Rv0855 COG1804C +hypothetical protein Rv0856 952825 953229 + 134 15607996 885783 - Rv0856 - +hypothetical protein Rv0857 953257 953730 + 157 57116792 885078 - Rv0857 - +aminotransferase 953727 954920 - 397 15607998 885784 - Rv0858c COG0436E +acetyl-CoA acetyltransferase 955077 956288 + 403 15607999 885774 fadA Rv0859 COG0183I +PROBABLE FATTY OXIDATION PROTEIN FADB 956293 958455 + 720 15608000 885799 fadB Rv0860 COG1024I, COG1250I +PROBABLE DNA HELICASE ERCC3 958523 960151 - 542 15608001 885425 ercc3 Rv0861c COG1061KL +hypothetical protein Rv0862c 960342 962612 - 756 15608002 885413 - Rv0862c - +hypothetical protein Rv0863 962599 962880 + 93 15608003 885423 - Rv0863 - +molybdenum cofactor biosynthesis protein C 962890 963393 + 167 15608004 885826 moaC Rv0864 COG0315H +PROBABLE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN 963390 963872 + 160 15608005 885348 mog Rv0865 COG0521H +PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E2 MOAE2 (MOLYBDOPTERIN CONVERTING FACTOR LARGE SUBUNIT) (MOLYBDOPTERIN 963869 964294 + 141 15608006 885431 moaE2 Rv0866 COG0314H +POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA 964312 965535 - 407 15608007 885749 rpfA Rv0867c - +PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D 2 MOAD2 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN 965983 966261 - 92 15608008 885763 moaD2 Rv0868c COG1977H +molybdenum cofactor biosynthesis protein A 966265 967347 - 360 15608009 885773 moaA Rv0869c COG2896H +hypothetical protein Rv0870c 967344 967733 - 129 15608010 885709 - Rv0870c COG3304S +PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB 967898 968305 + 135 15608011 885725 cspB Rv0871 COG1278K +PE-PGRS FAMILY PROTEIN 968424 970244 - 606 57116793 885742 PE_PGRS15 Rv0872c - +PROBABLE ACYL-CoA DEHYDROGENASE FADE10 970505 972457 + 650 15608013 885636 fadE10 Rv0873 COG1960I +hypothetical protein Rv0874c 972546 973706 - 386 15608014 885658 - Rv0874c COG4398S +POSSIBLE CONSERVED EXPORTED PROTEIN 973806 974294 - 162 15608015 885669 - Rv0875c - +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 974291 975937 - 548 15608016 885562 - Rv0876c COG0477GEPR +hypothetical protein Rv0877 976075 976863 + 262 15608017 885601 - Rv0877 - +PPE FAMILY PROTEIN 976872 978203 - 443 57116794 885617 PPE13 Rv0878c - +POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 978481 978756 - 91 15608019 885095 - Rv0879c - +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY MARR-FAMILY) 978934 979365 + 143 15608020 885205 - Rv0880 COG1846K +POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) 979362 980228 + 288 15608021 885121 - Rv0881 COG0566J +PROBABLE TRANSMEMBRANE PROTEIN 980225 980509 + 94 15608022 885248 - Rv0882 - +hypothetical protein Rv0883c 980506 981267 - 253 15608023 885139 - Rv0883c - +phosphoserine aminotransferase 981424 982554 - 376 15608024 885140 serC Rv0884c COG1932HE +hypothetical protein Rv0885 982762 983784 + 340 15608025 885285 - Rv0885 - +PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) 983803 985530 + 575 15608026 885195 fprB Rv0886 COG0493ER, COG1146C +hypothetical protein Rv0887c 985513 985971 - 152 15608027 885113 - Rv0887c COG2764S +PROBABLE EXPORTED PROTEIN 987233 988705 + 490 15608028 885210 - Rv0888 - +citrate synthase 2 988740 989861 - 373 15608029 885466 citA Rv0889c COG0372C +PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) 989948 992596 - 882 15608030 885227 - Rv0890c COG2771K, COG3903R +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 992598 993455 - 285 15608031 885493 - Rv0891c COG2114T +PROBABLE MONOOXYGENASE 993853 995340 + 495 15608032 885225 - Rv0892 COG2072P +hypothetical protein Rv0893c 995318 996295 - 325 15608033 885477 - Rv0893c COG3315Q +POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY LUXR-FAMILY) 996524 997705 + 393 15608034 885199 - Rv0894 COG3903R +hypothetical protein Rv0895 997782 999299 + 505 15608035 885481 - Rv0895 COG1020Q +type II citrate synthase 999472 1000767 + 431 15608036 885208 gltA Rv0896 COG0372C +PROBABLE OXIDOREDUCTASE 1000808 1002415 - 535 15608037 885641 - Rv0897c COG1233Q +hypothetical protein Rv0898c 1002441 1002704 - 87 15608038 885206 - Rv0898c - +OUTER MEMBRANE PROTEIN A OMPA 1002812 1003792 + 326 15608039 885286 ompA Rv0899 COG2885M +POSSIBLE MEMBRANE PROTEIN 1003805 1003957 + 50 15608040 885179 - Rv0900 - +POSSIBLE CONSERVED EXPORTED OR MEMBRANE PROTEIN 1003957 1004484 + 175 15608041 885203 - Rv0901 - +TWO COMPONENT SENSOR HISTIDINE KINASE PRRB 1004501 1005841 - 446 15608042 885647 prrB Rv0902c COG0642T +TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA 1005852 1006562 - 236 15608043 885209 prrA Rv0903c COG0745TK +PUTATIVE ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE (SUBUNIT BETA) ACCD3 (ACCASE BETA CHAIN) 1006693 1008180 - 495 15608044 885279 accD3 Rv0904c COG0777I, COG0825I +enoyl-CoA hydratase 1008207 1008938 + 243 15608045 885825 echA6 Rv0905 COG1024I +hypothetical protein Rv0906 1008944 1010062 + 372 15608046 885150 - Rv0906 COG2220R +hypothetical protein Rv0907 1010136 1011734 + 532 15608047 885146 - Rv0907 COG1680V +PROBABLE METAL CATION TRANSPORTER ATPASE P-TYPE CTPE 1011731 1014124 + 797 15608048 885657 ctpE Rv0908 COG0474P +hypothetical protein Rv0909 1014681 1014860 + 59 15608049 885197 - Rv0909 - +hypothetical protein Rv0910 1014866 1015300 + 144 15608050 885137 - Rv0910 - +hypothetical protein Rv0911 1015398 1016171 + 257 15608051 885093 - Rv0911 COG3324R +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 1016236 1016685 + 149 15608052 885103 - Rv0912 - +POSSIBLE DIOXYGENASE 1017217 1018725 - 502 15608053 885042 - Rv0913c COG3670Q +acetyl-CoA acetyltransferase 1018727 1019965 - 412 15608054 885046 - Rv0914c COG0183I +PPE FAMILY PROTEIN 1020058 1021329 - 423 57116795 885069 PPE14 Rv0915c - +PE FAMILY PROTEIN 1021344 1021643 - 99 57116796 885167 PE7 Rv0916c - +POSSIBLE GLYCINE BETAINE TRANSPORT INTEGRAL MEMBRANE PROTEIN BETP 1022087 1023868 + 593 15608057 885172 betP Rv0917 COG1292M +hypothetical protein Rv0918 1024211 1024687 + 158 15608058 885198 - Rv0918 COG4453S +hypothetical protein Rv0919 1024684 1025184 + 166 15608059 885221 - Rv0919 COG0454KR +PROBABLE TRANSPOSASE 1025497 1026816 - 439 15608060 885549 - Rv0920c COG3328L +POSSIBLE RESOLVASE 1027104 1027685 + 193 15608061 885557 - Rv0921 COG2452L +POSSIBLE TRANSPOSASE 1027685 1029337 + 550 15608062 885564 - Rv0922 COG0675L +hypothetical protein Rv0923c 1029513 1030577 - 354 15608063 885568 - Rv0923c COG2105S, COG4195R +manganese transport protein MntH 1030578 1031864 - 428 57116797 885569 mntH Rv0924c COG1914P +hypothetical protein Rv0925c 1031896 1032633 - 245 15608065 885570 - Rv0925c COG0655R +hypothetical protein Rv0926c 1032710 1033786 - 358 15608066 885387 - Rv0926c COG3804S +short chain dehydrogenase 1033840 1034631 - 263 15608067 885571 - Rv0927c COG1028IQR +PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS3 (PBP-3) (PSTS3) (PHOS1) 1034903 1036015 + 370 57116798 885366 pstS3 Rv0928 COG0226P +PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC2 1036028 1037002 + 324 15608069 885585 pstC2 Rv0929 COG0573P +PROBABLE PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA1 1036999 1037925 + 308 57116799 885589 pstA1 Rv0930 COG0581P +TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) 1037920 1039914 - 664 15608071 885607 pknD Rv0931c COG0515RTKL, COG3391S +PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS2 (PBP-2) (PSTS2) 1039936 1041048 - 370 57116800 885613 pstS2 Rv0932c COG0226P +PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PSTB 1041264 1042094 + 276 15608073 885653 pstB Rv0933 COG1117P +PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) 1042115 1043239 + 374 57116801 885724 pstS1 Rv0934 COG0226P +PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC1 1043299 1044315 + 338 57116802 885644 pstC1 Rv0935 COG0573P +PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTA2 1044317 1045222 + 301 15608076 885756 pstA2 Rv0936 COG0581P +hypothetical protein Rv0937c 1045199 1046020 - 273 15608077 885050 - Rv0937c COG1273S +ATP-dependent DNA ligase 1046136 1048415 + 759 15608078 885561 - Rv0938 COG1793L, COG3285L +POSSIBLE BIFUNCTIONAL ENZYME: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD ISOMERASE) + CYCLASE/DEHYDRASE 1048412 1050346 + 644 15608079 885560 - Rv0939 COG0179Q, COG0491R +POSSIBLE OXIDOREDUCTASE 1050593 1051459 - 288 15608080 885412 - Rv0940c COG2141C +hypothetical protein Rv0941c 1051544 1052317 - 257 15608081 885914 - Rv0941c - +hypothetical protein Rv0942 1052360 1052638 + 92 15608082 885913 - Rv0942 - +PROBABLE MONOOXYGENASE 1052696 1053736 - 346 15608083 885889 - Rv0943c COG2072P +POSSIBLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) 1053765 1054241 + 158 15608084 885888 - Rv0944 COG0266L +short chain dehydrogenase 1054247 1055008 + 253 15608085 885629 - Rv0945 COG1028IQR +glucose-6-phosphate isomerase 1055024 1056685 - 553 15608086 885533 pgi Rv0946c COG0166G +hypothetical protein Rv0948c 1057646 1057963 - 105 15608088 885485 - Rv0948c COG1605E +PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 1058260 1060575 + 771 57116803 885442 uvrD1 Rv0949 COG0210L +hypothetical protein Rv0950c 1060656 1061654 - 332 15608090 885438 - Rv0950c COG0739M +succinyl-CoA synthetase subunit beta 1061964 1063127 + 387 15608091 885434 sucC Rv0951 COG0045C +succinyl-CoA synthetase subunit alpha 1063140 1064051 + 303 15608092 885426 sucD Rv0952 COG0074C +POSSIBLE OXIDOREDUCTASE 1064114 1064962 - 282 15608093 885419 - Rv0953c COG2141C +PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 1065127 1066038 + 303 15608094 885411 - Rv0954 - +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 1066078 1067445 + 455 15608095 885408 - Rv0955 - +phosphoribosylglycinamide formyltransferase 1067561 1068208 + 215 15608096 885407 purN Rv0956 COG0299F +bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1068205 1069776 + 523 15608097 885406 purH Rv0957 COG0138F +POSSIBLE MAGNESIUM CHELATASE 1069883 1071262 + 459 15608098 885405 - Rv0958 COG1239H +hypothetical protein Rv0959 1071255 1073273 + 672 15608099 885329 - Rv0959 COG4867R +hypothetical protein Rv0960 1073545 1073928 + 127 15608100 885158 - Rv0960 COG4113R +PROBABLE INTEGRAL MEMBRANE PROTEIN 1074074 1074421 + 115 15608101 885173 - Rv0961 - +POSSIBLE LIPOPROTEIN LPRP 1074440 1075114 - 224 15608102 885177 lprP Rv0962c COG1902C, COG4608E +hypothetical protein Rv0963c 1075297 1076097 - 266 15608103 885184 - Rv0963c - +hypothetical protein Rv0964c 1076196 1076678 - 160 15608104 885186 - Rv0964c - +hypothetical protein Rv0965c 1076778 1077197 - 139 15608105 885230 - Rv0965c - +hypothetical protein Rv0966c 1077233 1077835 - 200 57116804 885043 - Rv0966c - +hypothetical protein Rv0967 1077975 1078334 + 119 15608107 885312 - Rv0967 COG1937S +hypothetical protein Rv0968 1078391 1078687 + 98 15608108 885052 - Rv0968 - +PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE CTPV 1078743 1081055 + 770 15608109 885254 ctpV Rv0969 COG2217P +PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 1081052 1081684 + 210 15608110 885242 - Rv0970 - +enoyl-CoA hydratase 1081775 1082584 - 269 15608111 885308 echA7 Rv0971c COG1024I +PROBABLE ACYL-CoA DEHYDROGENASE FADE12 1082584 1083750 - 388 15608112 885237 fadE12 Rv0972c COG1960I +PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA2: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) 1083747 1085750 - 667 15608113 885922 accA2 Rv0973c COG0439I, COG0511I, COG4770I +PROBABLE ACETYL-/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD2 1085756 1087345 - 529 15608114 886064 accD2 Rv0974c COG4799I +PROBABLE ACYL-CoA DEHYDROGENASE FADE13 1087348 1088496 - 382 15608115 885856 fadE13 Rv0975c COG1960I +hypothetical protein Rv0976c 1088493 1090175 - 560 15608116 885860 - Rv0976c - +PE-PGRS FAMILY PROTEIN 1090373 1093144 + 923 57116805 885264 PE_PGRS16 Rv0977 - +PE-PGRS FAMILY PROTEIN 1093361 1094356 - 331 57116806 885077 PE_PGRS17 Rv0978c COG3391S +hypothetical protein Rv0979c 1094670 1094864 - 64 57116807 885063 - Rv0979c - +50S ribosomal protein L32 1094886 1095059 + 57 57116808 3205057 rpmF Rv0979A - +PE-PGRS FAMILY PROTEIN 1095078 1096451 - 457 57116809 885327 PE_PGRS18 Rv0980c COG3391S +MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) 1096816 1097508 + 230 15608121 885038 mprA Rv0981 COG0745TK +PROBABLE TWO COMPONENT SENSOR KINASE MPRB 1097508 1099022 + 504 15608122 885062 mprB Rv0982 COG0642T +PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B) 1099066 1100460 + 464 15608123 885382 pepD Rv0983 COG0265O +POSSIBLE PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2 (PHS) (4-ALPHA-HYDROXY-TETRAHYDROPTERIN DEHYDRATASE) (PTERIN-4-A-CARBINOLAMINE DEHYDRATASE) (PHENYLALANINE HYDROXYLASE-STIMULATING PROTEIN) (PHS) (PTERIN CARBINOLAMINE DEHYDRATASE) (PCD) 1100460 1101005 + 181 15608124 885378 moaB2 Rv0984 COG0521H
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit-in2-tn5.wig Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,2000 @@ +1 2 +27 3 +33 1 +58 8 +65 1 +69 1 +77 1 +87 19 +150 6 +153 4 +166 2 +176 63 +179 1 +184 76 +187 1 +200 1 +205 25 +210 17 +215 37 +217 7 +226 5 +227 4 +238 1 +244 2 +252 5 +256 18 +283 3 +286 4 +291 9 +293 1 +301 10 +326 24 +327 10 +334 4 +341 1 +342 14 +344 4 +358 14 +363 1 +366 13 +415 28 +423 22 +431 10 +434 1 +438 10 +439 18 +446 10 +480 1 +481 3 +506 8 +508 15 +513 16 +521 1 +526 4 +576 9 +595 7 +634 9 +640 3 +655 20 +679 20 +682 1 +683 4 +684 3 +686 43 +694 2 +701 11 +704 5 +730 13 +740 10 +745 9 +751 8 +753 3 +758 2 +760 19 +764 24 +766 10 +814 7 +840 14 +842 15 +861 3 +888 4 +896 14 +932 2 +936 42 +940 21 +951 1 +956 8 +964 12 +972 7 +1025 8 +1027 15 +1029 51 +1036 9 +1037 75 +1039 3 +1053 7 +1064 2 +1087 1 +1133 15 +1141 84 +1149 1 +1158 8 +1168 22 +1176 17 +1212 1 +1217 18 +1222 12 +1225 5 +1233 2 +1236 6 +1237 3 +1253 1 +1258 1 +1269 1 +1276 18 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7 +15155 15 +15160 11 +15162 3 +15163 2 +15168 4 +15169 12 +15184 6 +15197 6 +15226 6 +15239 2 +15263 6 +15283 8 +15301 1 +15322 14 +15324 14 +15342 9 +15346 1 +15349 16 +15352 1 +15357 16 +15364 22 +15372 5 +15383 5 +15387 10 +15394 5 +15395 8 +15400 1 +15401 7 +15402 8 +15408 1 +15409 5 +15411 2 +15414 1 +15430 1 +15456 4 +15464 6 +15469 3 +15484 3 +15487 3 +15492 3 +15494 1 +15501 5 +15516 3 +15518 11 +15519 13 +15520 2 +15521 2 +15523 1 +15526 4 +15527 7 +15531 7 +15532 6 +15539 13 +15540 2 +15550 2 +15554 6 +15558 1 +15562 5 +15570 3 +15577 16 +15578 1 +15582 3 +15585 9 +15587 5 +15595 2 +15596 6 +15597 2 +15598 2 +15605 2 +15608 6 +15614 1 +15616 2 +15623 7 +15625 2 +15631 3 +15633 3 +15635 5 +15638 4 +15641 1 +15646 9 +15649 4 +15654 5 +15655 1 +15657 4 +15663 6 +15666 1 +15674 8 +15680 2 +15703 3 +15716 1 +15732 1 +15740 8 +15747 4 +15753 3 +15755 9 +15765 7 +15766 6 +15770 4 +15771 2 +15772 4 +15783 4 +15798 3 +15800 1 +15820 1 +15821 1 +15828 3 +15834 3 +15836 7 +15844 3 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56 +17052 3 +17057 35 +17065 45 +17067 7 +17070 12 +17072 26 +17078 10 +17079 16 +17089 15 +17095 12 +17103 7 +17109 30 +17118 13 +17181 9 +17218 1 +17228 23 +17230 19 +17234 1 +17241 1 +17244 5 +17272 10 +17274 52 +17275 1 +17282 1 +17289 12 +17294 4 +17295 17 +17296 4 +17297 4 +17302 6 +17303 33 +17305 20 +17309 18 +17310 28 +17311 7 +17316 7 +17317 34 +17318 23 +17321 3 +17324 1 +17329 27 +17330 28 +17331 10 +17338 17 +17357 2 +17360 1 +17375 6 +17449 25 +17508 24 +17516 36 +17524 17 +17528 7 +17529 9 +17531 3 +17539 6 +17562 9 +17566 6 +17569 1 +17572 2 +17574 13 +17585 9 +17587 7 +17588 1 +17591 22 +17598 14 +17606 6 +17608 4 +17614 6 +17618 1 +17626 6 +17628 11 +17629 14 +17633 7 +17636 31 +17641 19 +17686 29 +17714 1 +17724 5 +17746 13 +17754 6 +17755 1 +17759 7 +17767 2 +17781 11 +17786 6 +17791 1 +17812 9 +17820 39 +17825 7 +17835 12 +17862 7 +17868 20 +17887 5 +17899 17 +17903 8 +17909 5 +17911 8 +17924 3 +17932 5 +17964 2 +17968 17 +17986 5 +17989 15 +17997 1 +18006 15 +18013 1 +18014 41 +18021 1 +18029 9 +18035 2 +18036 19 +18041 11 +18061 4 +18069 1 +18081 1 +18082 11 +18089 23 +18092 7 +18094 11 +18102 8 +18104 4 +18108 13 +18111 7 +18124 9 +18127 3 +18129 48 +18135 1 +18139 2 +18145 8 +18149 9 +18161 5 +18174 1 +18232 22 +18255 11 +18256 4 +18265 1 +18310 1 +18313 5 +18346 7 +18352 3 +18359 11 +18395 3 +18400 18 +18405 3 +18443 2 +18444 3 +18450 5 +18452 21 +18458 6 +18518 12 +18532 11 +18535 1 +18548 24 +18550 4 +18556 7 +18598 1 +18618 2 +18662 12 +18670 3 +18672 15 +18674 1 +18675 21 +18682 9 +18706 7 +18708 5 +18722 3 +18730 4 +18760 1 +18764 4 +18771 8 +18772 12 +18776 9 +18787 1 +18795 13 +18820 31 +18823 6 +18828 2 +18833 5 +18843 7 +18849 11 +18878 2 +18884 13 +18886 10 +18889 9 +18897 41 +18917 3 +18923 26 +18924 1 +18925 26 +18939 10 +18968 15 +18970 6 +18979 1 +18995 7 +19011 3 +19014 7 +19016 1 +19019 11 +19026 5 +19030 3 +19040 10 +19045 9 +19046 7 +19047 8 +19048 33 +19051 5 +19052 16 +19053 22 +19065 7 +19067 3 +19073 3 +19075 14 +19081 1 +19096 5 +19105 3 +19108 5 +19139 8 +19147 14 +19151 2 +19162 2 +19170 21 +19176 12 +19177 20 +19178 25 +19185 11 +19190 17 +19194 17 +19197 11 +19202 3 +19231 1 +19235 7 +19238 25 +19240 10 +19265 12 +19284 60 +19300 2 +19312 12 +19325 5 +19349 3 +19350 4 +19389 1 +19408 10 +19419 13 +19421 7 +19424 1 +19427 7 +19434 8 +19438 1 +19441 2 +19447 2 +19449 1 +19455 23 +19457 1 +19463 29 +19472 2 +19481 6 +19509 11 +19513 4 +19515 6 +19518 1 +19519 8 +19520 8 +19523 18 +19537 8 +19548 22 +19551 3 +19553 22 +19556 3 +19558 6 +19561 5 +19571 2 +19574 3 +19579 27 +19582 15 +19591 5 +19603 4 +19613 1 +19616 12 +19621 1 +19641 5 +19643 15 +19645 2 +19650 11 +19660 26 +19663 1 +19671 3 +19674 3 +19681 12 +19694 1 +19695 6 +19699 1 +19700 1 +19706 15 +19711 3 +19714 13 +19716 11 +19720 12 +19722 3 +19724 16 +19738 14 +19764 19 +19781 23 +19786 26 +19807 6
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transit_tn5.prot Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,500 @@ +- 190 255 + 21 - - thrL BW25113_0001 - +bifunctional: aspartokinase I (N-terminal)%3B homoserine dehydrogenase I (C-terminal) 337 2799 + 820 - - thrA BW25113_0002 - +- 2801 3733 + 310 - - thrB BW25113_0003 - +- 3734 5020 + 428 - - thrC BW25113_0004 - +- 5234 5530 + 98 - - yaaX BW25113_0005 - +- 5683 6459 - 258 - - yaaA BW25113_0006 - +inner membrane transport protein 6529 7959 - 476 - - yaaJ BW25113_0007 - +- 8238 9191 + 317 - - talB BW25113_0008 - +putative molybdochetalase in molybdopterine biosynthesis 9306 9893 + 195 - - mog BW25113_0009 - +- 9928 10494 - 188 - - satP BW25113_0010 - +- 10643 11356 - 237 - - yaaW BW25113_0011 - +- 11382 11786 - 134 - - yaaI BW25113_0013 - +chaperone Hsp70%3B DNA biosynthesis%3B autoregulated heat shock proteins 12163 14079 + 638 - - dnaK BW25113_0014 - +chaperone with DnaK%3B heat shock protein 14168 15298 + 376 - - dnaJ BW25113_0015 - +- 15445 16557 + 370 - - insL1 BW25113_0016 - +regulatory peptide whose translation enables hokC (gef) expression%3B completely contained in another CDS 16751 16960 - 69 - - mokC BW25113_0018 - +small toxic membrane polypeptide%3B completely contained in another CDS 16751 16903 - 50 - - hokC BW25113_4412 - +- 16952 17006 + 18 - - sokC BW25113_4413 - +Na+/H antiporter%2C pH dependent 17489 18655 + 388 - - nhaA BW25113_0019 - +- 18715 19620 + 301 - - nhaR BW25113_0020 - +- 19811 20314 - 167 - - insB1 BW25113_0021 - +- 20233 20508 - 91 - - insA BW25113_0022 - +- 20815 21078 - 87 - - rpsT BW25113_0023 - +- 21181 21399 + 72 - - yaaY BW25113_0024 - +- 21407 22348 + 313 - - ribF BW25113_0025 - +isoleucine tRNA synthetase 22391 25207 + 938 - - ileS BW25113_0026 - +prolipoprotein signal peptidase (SPase II) 25207 25701 + 164 - - lspA BW25113_0027 - +- 25826 26275 + 149 - - fkpB BW25113_0028 - +- 26277 27227 + 316 - - ispH BW25113_0029 - +- 27293 28207 + 304 - - rihC BW25113_0030 - +- 28374 29195 + 273 - - dapB BW25113_0031 - +- 29651 30799 + 382 - - carA BW25113_0032 - +- 30817 34038 + 1073 - - carB BW25113_0033 - +transcriptional regulator of cai operon 34300 34695 + 131 - - caiF BW25113_0034 - +possible synthesis of cofactor for carnitine racemase and dehydratase 34781 35371 - 196 - - caiE BW25113_0035 - +carnitine racemase 35377 36162 - 261 - - caiD BW25113_0036 - +probable crotonobetaine/carnitine-CoA ligase 36271 37824 - 517 - - caiC BW25113_0037 - +l-carnitine dehydratase 37898 39115 - 405 - - caiB BW25113_0038 - +probable carnitine operon oxidoreductase 39244 40386 - 380 - - caiA BW25113_0039 - +probable carnitine transporter 40417 41931 - 504 - - caiT BW25113_0040 - +probable flavoprotein subunit%2C carnitine metabolism 42403 43173 + 256 - - fixA BW25113_0041 - +probable flavoprotein subunit%2C carnitine metabolism 43188 44129 + 313 - - fixB BW25113_0042 - +flavoprotein%3B electron transport 44180 45466 + 428 - - fixC BW25113_0043 - +putative ferredoxin 45463 45750 + 95 - - fixX BW25113_0044 - +putative transport protein 45807 47138 + 443 - - yaaU BW25113_0045 - +putative NAD(P)H oxidoreductase 47246 47776 + 176 - - kefF BW25113_0046 - +K+ efflux antiporter%2C glutathione-regulated 47769 49631 + 620 - - kefC BW25113_0047 - +dihydrofolate reductase type I%3B trimethoprim resistance 49823 50302 + 159 - - folA BW25113_0048 - +- 50380 51222 - 280 - - apaH BW25113_0049 - +- 51229 51606 - 125 - - apaG BW25113_0050 - +- 51609 52430 - 273 - - rsmA BW25113_0051 - +pyridoxine biosynthesis 52427 53416 - 329 - - pdxA BW25113_0052 - +survival protein 53416 54702 - 428 - - surA BW25113_0053 - +organic solvent tolerance 54755 57109 - 784 - - lptD BW25113_0054 - +- 57364 58179 + 271 - - djlA BW25113_0055 - +- 59687 60346 - 219 - - rluA BW25113_0058 - +probable ATP-dependent RNA helicase 60358 63264 - 968 - - rapA BW25113_0059 - +- 63429 65780 - 783 - - polB BW25113_0060 - +transcriptional regulator for ara operon 66874 67752 + 292 - - araC BW25113_0064 - +- 67838 68602 + 254 - - yabI BW25113_0065 - +putative ATP-binding component of a transport system 68716 69414 - 232 - - thiQ BW25113_0066 - +- 69398 71008 - 536 - - thiP BW25113_0067 - +thiamin-binding periplasmic protein%3B periplasmic-binding component of ABC superfamily 70984 71967 - 327 - - thiB BW25113_0068 - +putative transport protein 72131 73786 - 551 - - sgrR BW25113_0069 - +- 73854 74080 + 75 - - sgrS BW25113_4577 - +- 73875 74006 + 43 - - sgrT BW25113_4662 - +- 74108 75286 + 392 - - setA BW25113_0070 - +isopropylmalate isomerase subunit 75335 75940 - 201 - - leuD BW25113_0071 - +3-isopropylmalate isomerase (dehydratase) subunit 75951 77351 - 466 - - leuC BW25113_0072 - +- 77354 78445 - 363 - - leuB BW25113_0073 - +- 78445 80016 - 523 - - leuA BW25113_0074 - +- 80109 80195 - 28 - - leuL BW25113_0075 - +probable transcriptional activator for leuABCD operon 80855 81799 + 314 - - leuO BW25113_0076 - +acetolactate synthase III%2C valine sensitive%2C large subunit 82117 83841 + 574 - - ilvI BW25113_0077 - +acetolactate synthase III%2C valine sensitive%2C small subunit 83844 84335 + 163 - - ilvH BW25113_0078 - +transcriptional repressor of fru operon and others 84515 85519 + 334 - - cra BW25113_0080 - +- 86121 86579 + 152 - - mraZ BW25113_0081 - +putative apolipoprotein 86581 87522 + 313 - - rsmH BW25113_0082 - +cell division protein%3B ingrowth of wall at septum 87519 87884 + 121 - - ftsL BW25113_0083 - +septum formation%3B penicillin-binding protein 3%3B peptidoglycan synthetase 87900 89666 + 588 - - ftsI BW25113_0084 - +- 89653 91140 + 495 - - murE BW25113_0085 - +- 91137 92495 + 452 - - murF BW25113_0086 - +phospho-N-acetylmuramoyl-pentapeptide transferase? 92489 93571 + 360 - - mraY BW25113_0087 - +- 93574 94890 + 438 - - murD BW25113_0088 - +cell division%3B membrane protein involved in shape determination 94890 96134 + 414 - - ftsW BW25113_0089 - +- 96131 97198 + 355 - - murG BW25113_0090 - +- 97252 98727 + 491 - - murC BW25113_0091 - +D-alanine-D-alanine ligase B%2C affects cell division 98720 99640 + 306 - - ddlB BW25113_0092 - +cell division protein%3B ingrowth of wall at septum 99642 100472 + 276 - - ftsQ BW25113_0093 - +ATP-binding cell division protein%2C septation process%2C complexes with FtsZ%2C associated with junctions of inner and outer membranes 100469 101731 + 420 - - ftsA BW25113_0094 - +cell division%3B forms circumferential ring%3B tubulin-like GTP-binding protein and GTPase 101792 102943 + 383 - - ftsZ BW25113_0095 - +UDP-3-O-acyl N-acetylglucosamine deacetylase%3B lipid A biosynthesis 103044 103961 + 305 - - lpxC BW25113_0096 - +- 104192 104704 + 170 - - secM BW25113_0097 - +preprotein translocase%3B secretion protein 104766 107471 + 901 - - secA BW25113_0098 - +7%2C8-dihydro-8-oxoguanine-triphosphatase%2C prefers dGTP%2C causes AT-GC transversions 107531 107920 + 129 - - mutT BW25113_0099 - +- 108136 108333 - 65 - - yacG BW25113_0101 - +- 108343 109086 - 247 - - zapD BW25113_0102 - +putative DNA repair protein 109086 109706 - 206 - - coaE BW25113_0103 - +- 109931 110974 + 347 - - guaC BW25113_0104 - +putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 111009 112211 - 400 - - hofC BW25113_0106 - +putative integral membrane protein involved in biogenesis of fimbriae%2C protein transport%2C DNA uptake 112201 113586 - 461 - - hofB BW25113_0107 - +prelipin peptidase dependent protein 113596 114036 - 146 - - ppdD BW25113_0108 - +- 114239 115132 - 297 - - nadC BW25113_0109 - +regulates ampC 115220 115771 + 183 - - ampD BW25113_0110 - +regulates ampC 115768 116622 + 284 - - ampE BW25113_0111 - +aromatic amino acid transport protein 116665 118038 - 457 - - aroP BW25113_0112 - +transcriptional regulator for pyruvate dehydrogenase complex 118579 119343 + 254 - - pdhR BW25113_0113 - +pyruvate dehydrogenase (decarboxylase component) 119504 122167 + 887 - - aceE BW25113_0114 - +pyruvate dehydrogenase (dihydrolipoyltransacetylase component) 122182 124074 + 630 - - aceF BW25113_0115 - +lipoamide dehydrogenase (NADH)%3B component of 2-oxodehydrogenase and pyruvate complexes%3B L-protein of glycine cleavage complex 124399 125823 + 474 - - lpd BW25113_0116 - +putative membrane protein 125894 127747 - 617 - - yacH BW25113_0117 - +aconitate hydrase B 128102 130699 + 865 - - acnB BW25113_0118 - +- 130875 131237 + 120 - - yacL BW25113_0119 - +- 131275 132069 - 264 - - speD BW25113_0120 - +spermidine synthase %3D putrescine aminopropyltransferase 132085 132951 - 288 - - speE BW25113_0121 - +- 133057 133404 - 115 - - yacC BW25113_0122 - +- 133570 135120 + 516 - - cueO BW25113_0123 - +- 135322 137712 - 796 - - gcd BW25113_0124 - +- 137918 138454 + 178 - - hpt BW25113_0125 - +putative carbonic anhdrase 138495 139157 - 220 - - can BW25113_0126 - +putative ATP-binding component of a transport system 139266 140192 + 308 - - yadG BW25113_0127 - +- 140189 140959 + 256 - - yadH BW25113_0128 - +putative PTS enzyme II B component 141064 141504 + 146 - - yadI BW25113_0129 - +conserved hypothetical protein 141568 142797 + 409 - - yadE BW25113_0130 - +- 142801 143181 - 126 - - panD BW25113_0131 - +- 143455 144357 + 300 - - yadD BW25113_0132 - +- 144431 145282 - 283 - - panC BW25113_0133 - +- 145294 146088 - 264 - - panB BW25113_0134 - +putative fimbrial-like protein 146202 147440 - 412 - - yadC BW25113_0135 - +putative fimbrial protein 147490 148086 - 198 - - yadK BW25113_0136 - +putative fimbrial protein 148113 148718 - 201 - - yadL BW25113_0137 - +putative fimbrial-like protein 148730 149299 - 189 - - yadM BW25113_0138 - +probable outer membrane porin protein involved in fimbrial assembly 149316 151913 - 865 - - htrE BW25113_0139 - +probable pilin chaperone similar to PapD 151948 152688 - 246 - - yadV BW25113_0140 - +putative fimbrial-like protein 152786 153370 - 194 - - yadN BW25113_0141 - +7%2C8-dihydro-6-hydroxymethylpterin- pyrophosphokinase 153740 154219 - 159 - - folK BW25113_0142 - +- 154216 155613 - 465 - - pcnB BW25113_0143 - +putative tRNA synthetase 155673 156599 - 308 - - gluQ BW25113_0144 - +dnaK suppressor protein 156636 157091 - 151 - - dksA BW25113_0145 - +probable regulator for maltose metabolism 157269 157973 - 234 - - sfsA BW25113_0146 - +- 157988 158518 - 176 - - ligT BW25113_0147 - +helicase%2C ATP-dependent 158592 161021 + 809 - - hrpB BW25113_0148 - +peptidoglycan synthetase%3B penicillin-binding protein 1B 161217 163751 + 844 - - mrcB BW25113_0149 - +outer membrane protein receptor for ferrichrome%2C colicin M%2C and phages T1%2C T5%2C and phi80 163971 166214 + 747 - - fhuA BW25113_0150 - +ATP-binding component of hydroxymate-dependent iron transport 166265 167062 + 265 - - fhuC BW25113_0151 - +hydroxamate-dependent iron uptake%2C cytoplasmic membrane component%3B periplasmic-binding component of ABC superfamily 167062 167952 + 296 - - fhuD BW25113_0152 - +- 167949 169931 + 660 - - fhuB BW25113_0153 - +- 170089 171369 - 426 - - hemL BW25113_0154 - +putative channel transporter 171594 173015 + 473 - - clcA BW25113_0155 - +- 173097 173441 + 114 - - erpA BW25113_0156 - +- 173488 174111 - 207 - - yadS BW25113_0157 - +- 174149 174949 - 266 - - btuF BW25113_0158 - +- 174942 175640 - 232 - - mtn BW25113_0159 - +- 175724 177241 + 505 - - dgt BW25113_0160 - +periplasmic serine protease Do%3B heat shock protein HtrA 177371 178795 + 474 - - degP BW25113_0161 - +- 178950 180107 + 385 - - cdaR BW25113_0162 - +putative structural protein 180196 180582 - 128 - - yaeH BW25113_0163 - +- 180744 181556 - 270 - - yaeI BW25113_0164 - +- 181610 182434 - 274 - - dapD BW25113_0166 - +protein PII%3B uridylyltransferase acts on regulator of glnA 182465 185137 - 890 - - glnD BW25113_0167 - +- 185199 185993 - 264 - - map BW25113_0168 - +- 186199 186334 + 45 - - tff BW25113_4414 - +- 186361 187086 + 241 - - rpsB BW25113_0169 - +- 187344 188195 + 283 - - tsf BW25113_0170 - +- 188342 189067 + 241 - - pyrH BW25113_0171 - +ribosome releasing factor 189359 189916 + 185 - - frr BW25113_0172 - +- 190008 191204 + 398 - - dxr BW25113_0173 - +undecaprenyl pyrophosphate synthetase (di-trans%2Cpoly-cis-decaprenylcistransferase) 191390 192151 + 253 - - ispU BW25113_0174 - +CDP-diglyceride synthetase 192164 193021 + 285 - - cdsA BW25113_0175 - +- 193033 194385 + 450 - - rseP BW25113_0176 - +putative outer membrane antigen 194415 196847 + 810 - - bamA BW25113_0177 - +periplasmic molecular chaperone for outer membrane proteins 196969 197454 + 161 - - skp BW25113_0178 - +- 197458 198483 + 341 - - lpxD BW25113_0179 - +- 198588 199043 + 151 - - fabZ BW25113_0180 - +UDP-N-acetylglucosamine acetyltransferase%3B lipid A biosynthesis 199047 199835 + 262 - - lpxA BW25113_0181 - +tetraacyldisaccharide-1-P%3B lipid A biosynthesis%2C penultimate step 199835 200983 + 382 - - lpxB BW25113_0182 - +RNAse HII%2C degrades RNA of DNA-RNA hybrids 200980 201576 + 198 - - rnhB BW25113_0183 - +DNA polymerase III%2C alpha subunit 201613 205095 + 1160 - - dnaE BW25113_0184 - +acetylCoA carboxylase%2C carboxytransferase component%2C alpha subunit 205108 206067 + 319 - - accA BW25113_0185 - +- 206166 208307 + 713 - - ldcC BW25113_0186 - +- 208364 208753 + 129 - - yaeR BW25113_0187 - +- 208818 210116 + 432 - - tilS BW25113_0188 - +- 210165 210419 - 84 - - rof BW25113_0189 - +conserved hypothetical protein 210412 210612 - 66 - - yaeP BW25113_4406 - +- 210778 211323 + 181 - - yaeQ BW25113_0190 - +- 211320 211742 + 140 - - arfB BW25113_0191 - +copper homeostasis protein (lipoprotein) 211756 212466 + 236 - - nlpE BW25113_0192 - +- 212666 213490 - 274 - - yaeF BW25113_0193 - +proline tRNA synthetase 213544 215262 - 572 - - proS BW25113_0194 - +- 215374 216081 - 235 - - tsaA BW25113_0195 - +regulator in colanic acid synthesis%3B interacts with RcsB 216078 216482 - 134 - - rcsF BW25113_0196 - +D-methionine transport protein (ABC superfamily%2C peri_bind) 216600 217415 - 271 - - metQ BW25113_0197 - +D- and L-methionine transport protein (ABC superfamily%2C membrane) 217455 218108 - 217 - - metI BW25113_0198 - +D- and L-methionine transport protein (ABC superfamily%2C atp_bind) 218101 219132 - 343 - - metN BW25113_0199 - +- 219320 219895 + 191 - - gmhB BW25113_0200 - +- 220258 221799 + 513 - - rrsH BW25113_0201 - +- 221868 221944 + 25 - - ileV BW25113_0202 - +- 221987 222062 + 25 - - alaV BW25113_0203 - +- 222246 225149 + 967 - - rrlH BW25113_0204 - +- 225243 225362 + 39 - - rrfH BW25113_0205 - +- 225415 225491 + 25 - - aspU BW25113_0206 - +- 225654 226457 + 267 - - dkgB BW25113_0207 - +putative transcriptional regulator LYSR-type 226454 227368 - 304 - - yafC BW25113_0208 - +- 227609 228409 + 266 - - yafD BW25113_0209 - +putative biotin synthesis protein 228413 229036 + 207 - - yafE BW25113_0210 - +- 229084 230442 - 452 - - mltD BW25113_0211 - +probable hydroxyacylglutathione hydrolase 230514 231269 - 251 - - gloB BW25113_0212 - +- 231303 232025 + 240 - - yafS BW25113_0213 - +RNase HI%2C degrades RNA of DNA-RNA hybrids%2C participates in DNA replication 232022 232489 - 155 - - rnhA BW25113_0214 - +DNA polymerase III%2C epsilon subunit 232554 233285 + 243 - - dnaQ BW25113_0215 - +- 233418 233494 + 25 - - aspV BW25113_0216 - +putative aminopeptidase 233822 234607 + 261 - - yafT BW25113_0217 - +- 234744 235223 - 159 - - ykfM BW25113_4586 - +putative EC 3.5. amidase-type enzyme 235906 236676 - 256 - - yafV BW25113_0219 - +inhibitor of vertebrate C-type lysozyme%2C periplasmic 236830 237303 + 157 - - ivy BW25113_0220 - +- 237346 239790 - 814 - - fadE BW25113_0221 - +phosphoheptose isomerase 240030 240608 + 192 - - gmhA BW25113_0222 - +putative amidotransferase 240814 241581 + 255 - - yafJ BW25113_0223 - +- 241552 242292 - 246 - - yafK BW25113_0224 - +- 242448 242726 - 92 - - yafQ BW25113_0225 - +damage-inducible protein J 242729 242989 - 86 - - dinJ BW25113_0226 - +putative lipoprotein 243199 243948 + 249 - - yafL BW25113_0227 - +- 244124 244621 + 165 - - rayT BW25113_0228 - +DNA polymerase IV%3B DNA polymerase IV%2C devoid of proofreading%2C damage-inducible protein P 247385 248440 + 351 - - dinB BW25113_0231 - +- 248492 248785 + 97 - - yafN BW25113_0232 - +- 248788 249186 + 132 - - yafO BW25113_0233 - +- 249196 249648 + 150 - - yafP BW25113_0234 - +- 250746 252203 - 485 - - pepD BW25113_0237 - +- 252464 252922 + 152 - - gpt BW25113_0238 - +- 253014 254258 + 414 - - frsA BW25113_0239 - +sigma factor-binding protein%2C stimulates RNA polymerase holoenzyme formation%3Bregulator%3B Surface structures%3B transcriptional regulator of cryptic csgA gene for curli surface fibers 254316 254717 + 133 - - crl BW25113_0240 - +outer membrane pore protein E (E%2CIc%2CNmpAB) 254756 255811 - 351 - - phoE BW25113_0241 - +- 256099 257202 + 367 - - proB BW25113_0242 - +- 257214 258467 + 417 - - proA BW25113_0243 - +- 258582 258657 + 25 - - thrW BW25113_0244 - +- 259039 259380 - 113 - - ykfI BW25113_0245 - +- 259401 259718 - 105 - - yafW BW25113_0246 - +- 259737 259958 - 73 - - ykfH BW25113_4504 - +putative DNA repair protein 259967 260443 - 158 - - ykfG BW25113_0247 - +- 260459 260917 - 152 - - yafX BW25113_0248 - +- 261015 261254 - 79 - - ykfF BW25113_0249 - +- 261331 261798 - 155 - - ykfB BW25113_0250 - +hypothetical transcriptional regulator 261821 262264 - 147 - - yafY BW25113_0251 - +- 262895 263716 - 273 - - yafZ BW25113_0252 - +putative GTP-binding protein 263808 264671 - 287 - - ykfA BW25113_0253 - +peroxide resistance protein 265000 265893 - 297 - - perR BW25113_0254 - +- 266314 267465 + 383 - - insI1 BW25113_0256 - +- 268291 268365 + 24 - - eyeA BW25113_4690 - +- 269812 270828 - 338 - - insH1 BW25113_0259 - +- 271036 272439 + 467 - - mmuP BW25113_0260 - +- 272426 273358 + 310 - - mmuM BW25113_0261 - +putative ATP-binding component of a transport system 273467 274513 - 348 - - afuC BW25113_0262 - +- 274889 275392 - 167 - - insB1 BW25113_0264 - +- 275311 275586 - 91 - - insA BW25113_0265 - +- 276540 277694 - 384 - - yagA BW25113_0267 - +putative lyase/synthase 277989 278897 + 302 - - yagE BW25113_0268 - +putative dehydratase 278912 280879 + 655 - - yagF BW25113_0269 - +putative permease 281106 282488 + 460 - - yagG BW25113_0270 - +putative beta-xylosidase 282500 284110 + 536 - - yagH BW25113_0271 - +putative regulator 284115 284873 - 252 - - yagI BW25113_0272 - +ornithine carbamoyltransferase 2%2C chain F 285012 286016 - 334 - - argF BW25113_0273 - +- 286360 286863 - 167 - - insB1 BW25113_0274 - +- 286782 287057 - 91 - - insA BW25113_0275 - +- 288033 288659 - 208 - - yagK BW25113_0277 - +DNA-binding protein 288931 289629 - 232 - - yagL BW25113_0278 - +- 289656 290510 - 284 - - yagM BW25113_0279 - +- 290850 291290 - 146 - - yagN BW25113_0280 - +putative phage integrase 291407 292807 - 466 - - intF BW25113_0281 - +- 293481 294437 - 318 - - paoD BW25113_0283 - +- 294447 296645 - 732 - - paoC BW25113_0284 - +- 296642 297598 - 318 - - paoB BW25113_0285 - +putative xanthine dehydrogenase 297595 298284 - 229 - - paoA BW25113_0286 - +- 298702 299316 + 204 - - yagU BW25113_0287 - +putative ferredoxin 299564 299893 - 109 - - ykgJ BW25113_0288 - +- 300206 300916 - 236 - - ecpE BW25113_0289 - +putative receptor 300885 302528 - 547 - - ecpD BW25113_0290 - +putative enzyme 302518 305043 - 841 - - ecpC BW25113_0291 - +- 305069 305737 - 222 - - ecpB BW25113_0292 - +- 305795 306382 - 195 - - ecpA BW25113_0293 - +putative regulator 306457 307047 - 196 - - ecpR BW25113_0294 - +- 307823 308050 + 75 - - ykgL BW25113_0295 - +- 308085 308225 - 46 - - ykgO BW25113_4506 - +- 308225 308488 - 87 - - ykgM BW25113_0296 - +- 308852 308953 - 33 - - ykgR BW25113_4671 - +- 311002 311301 + 99 - - insE1 BW25113_0298 - +- 311298 312164 + 288 - - insF1 BW25113_0299 - +- 313437 314030 - 197 - - rclC BW25113_0301 - +the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene%2C and has been deaccessioned 314042 314278 - 78 - - rclB BW25113_0303 - +putative oxidoreductase 314387 315712 - 441 - - rclA BW25113_0304 - +putative ARAC-type regulatory protein 315938 316792 + 284 - - rclR BW25113_0305 - +putative dehydrogenase subunit 317319 318038 + 239 - - ykgE BW25113_0306 - +- 318049 319476 + 475 - - ykgF BW25113_0307 - +putative transporter 319469 320164 + 231 - - ykgG BW25113_0308 - +- 320407 321075 - 222 - - ykgH BW25113_0310 - +- 321288 322958 - 556 - - betA BW25113_0311 - +NAD+-dependent betaine aldehyde dehydrogenase 322972 324444 - 490 - - betB BW25113_0312 - +probably transcriptional repressor of bet genes 324458 325045 - 195 - - betI BW25113_0313 - +high-affinity choline transport 325174 327207 + 677 - - betT BW25113_0314 - +- 328082 329170 + 362 - - yahA BW25113_0315 - +putative transcriptional regulator LYSR-type 329212 330144 - 310 - - yahB BW25113_0316 - +- 330236 330733 - 165 - - yahC BW25113_0317 - +putative transcription factor 330991 331596 + 201 - - yahD BW25113_0318 - +- 331636 332499 + 287 - - yahE BW25113_0319 - +putative oxidoreductase subunit 332489 334036 + 515 - - yahF BW25113_0320 - +- 334036 335454 + 472 - - yahG BW25113_0321 - +putative kinase 335876 336826 + 316 - - yahI BW25113_0323 - +putative deaminase 336836 338218 + 460 - - yahJ BW25113_0324 - +putative oxidoreductase 338595 339644 + 349 - - yahK BW25113_0325 - +- 339887 340702 + 271 - - yahL BW25113_0326 - +- 341115 341360 + 81 - - yahM BW25113_0327 - +putative cytochrome subunit of dehydrogenase 341377 342048 - 223 - - yahN BW25113_0328 - +- 342195 342470 + 91 - - yahO BW25113_0329 - +regulator for prp operon 342568 344154 - 528 - - prpR BW25113_0330 - +putative phosphonomutase 2 344393 345283 + 296 - - prpB BW25113_0331 - +putative citrate synthase%3B propionate metabolism? 345723 346892 + 389 - - prpC BW25113_0333 - +- 346926 348377 + 483 - - prpD BW25113_0334 - +putative propionyl-CoA synthetase 348417 350303 + 628 - - prpE BW25113_0335 - +cytosine permease/transport 350633 351892 + 419 - - codB BW25113_0336 - +- 351882 353165 + 427 - - codA BW25113_0337 - +cyn operon positive regulator 353502 354401 - 299 - - cynR BW25113_0338 - +- 354510 355169 + 219 - - cynT BW25113_0339 - +cyanate aminohydrolase%2C cyanase 355200 355670 + 156 - - cynS BW25113_0340 - +cyanate transport 355703 356857 + 384 - - cynX BW25113_0341 - +- 356960 357571 - 203 - - lacA BW25113_0342 - +galactoside permease (lactose permease%2C M protein) (MFS family) 357637 358890 - 417 - - lacY BW25113_0343 - +transcriptional repressor of the lac operon 360661 361743 - 360 - - lacI BW25113_0345 - +transcriptional regulator for mhp operon 361820 362653 - 277 - - mhpR BW25113_0346 - +- 362844 364508 + 554 - - mhpA BW25113_0347 - +- 364510 365454 + 314 - - mhpB BW25113_0348 - +- 367571 368380 + 269 - - mhpD BW25113_0350 - +acetaldehyde dehydrogenase 368377 369327 + 316 - - mhpF BW25113_0351 - +4-hydroxy-2-ketovalerate aldolase 369324 370337 + 337 - - mhpE BW25113_0352 - +putative transport protein 370915 372126 + 403 - - mhpT BW25113_0353 - +- 372228 372767 + 179 - - yaiL BW25113_0354 - +putative S-formylglutathione hydrolase 372991 373824 - 277 - - frmB BW25113_0355 - +alcohol dehydrogenase class III%3B formaldehyde dehydrogenase%2C glutathione-dependent 373918 375027 - 369 - - frmA BW25113_0356 - +repressor of frmRAB 375062 375337 - 91 - - frmR BW25113_0357 - +- 375525 376298 - 257 - - yaiO BW25113_0358 - +- 376807 377172 + 121 - - insC1 BW25113_0360 - +- 377130 378035 + 301 - - insD1 BW25113_0361 - +polysaccharide metabolism 378195 379391 - 398 - - yaiP BW25113_0363 - +- 379515 380072 - 185 - - yaiS BW25113_0364 - +taurine transport system periplasmic protein 380688 381650 + 320 - - tauA BW25113_0365 - +taurine ATP-binding component of a transport system 381663 382430 + 255 - - tauB BW25113_0366 - +taurine transport system permease protein 382427 383254 + 275 - - tauC BW25113_0367 - +- 383251 384102 + 283 - - tauD BW25113_0368 - +5-aminolevulinate dehydratase %3D porphobilinogen synthase 384209 385183 - 324 - - hemB BW25113_0369 - +- 387195 388061 - 288 - - insF1 BW25113_0372 - +- 388058 388357 - 99 - - insE1 BW25113_0373 - +- 389962 390585 + 207 - - yaiV BW25113_0375 - +- 390586 391743 - 385 - - ampH BW25113_0376 - +sensitivity to microcin B17%2C possibly envelop protein 392095 393315 + 406 - - sbmA BW25113_0377 - +- 393328 394422 + 364 - - yaiW BW25113_0378 - +- 394481 394789 - 102 - - yaiY BW25113_0379 - +- 395049 395261 + 70 - - yaiZ BW25113_0380 - +- 395285 396379 - 364 - - ddlA BW25113_0381 - +- 396842 397102 + 86 - - iraP BW25113_0382 - +alkaline phosphatase%3B start codon corrected 397203 398618 + 471 - - phoA BW25113_0383 - +induced by phosphate starvation 398737 399057 + 106 - - psiF BW25113_0384 - +- 399159 400274 + 371 - - yaiC BW25113_0385 - +pyrroline-5-carboxylate reductase 400291 401100 - 269 - - proC BW25113_0386 - +- 401220 401678 + 152 - - yaiI BW25113_0387 - +- 401861 402385 + 174 - - aroL BW25113_0388 - +- 402435 402626 + 63 - - yaiA BW25113_0389 - +protein of aro operon%2C regulated by aroR 402884 403561 + 225 - - aroM BW25113_0390 - +- 403633 403917 + 94 - - yaiE BW25113_0391 - +- 404564 405475 - 303 - - rdgC BW25113_0393 - +possible NAGC-like transcriptional regulator 405600 406508 + 302 - - mak BW25113_0394 - +involved in either transport or processing of arabinose polymers 406753 407937 - 394 - - araJ BW25113_0396 - +ATP-dependent dsDNA exonuclease 408063 411209 - 1048 - - sbcC BW25113_0397 - +ATP-dependent dsDNA exonuclease 411206 412408 - 400 - - sbcD BW25113_0398 - +positive response regulator for pho regulon%2C sensor is PhoR (or CreC) 412598 413287 + 229 - - phoB BW25113_0399 - +positive and negative sensor protein for pho regulon 413345 414640 + 431 - - phoR BW25113_0400 - +branched chain amino acid transport system II carrier protein 415047 416366 + 439 - - brnQ BW25113_0401 - +proline permease transport protein 416442 417815 + 457 - - proY BW25113_0402 - +- 417974 419788 + 604 - - malZ BW25113_0403 - +putative glycoprotein 419793 420374 - 193 - - acpH BW25113_0404 - +synthesis of queuine in tRNA%3B probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase 420467 421537 + 356 - - queA BW25113_0405 - +- 421593 422720 + 375 - - tgt BW25113_0406 - +- 422743 423075 + 110 - - yajC BW25113_0407 - +protein secretion%3B membrane protein%2C part of the channel 423103 424950 + 615 - - secD BW25113_0408 - +protein secretion%2C membrane protein 424961 425932 + 323 - - secF BW25113_0409 - +- 426061 426408 + 115 - - yajD BW25113_0410 - +nucleoside channel%3B receptor of phage T6 and colicin K 426585 427469 - 294 - - tsx BW25113_0411 - +- 427768 428307 - 179 - - yajI BW25113_0412 - +- 428458 428907 + 149 - - nrdR BW25113_0413 - +- 428911 430014 + 367 - - ribD BW25113_0414 - +riboflavin synthase%2C beta chain 430103 430573 + 156 - - ribE BW25113_0415 - +transcription termination%3B L factor 430593 431012 + 139 - - nusB BW25113_0416 - +- 431090 432067 + 325 - - thiL BW25113_0417 - +phosphatidylglycerophosphatase 432045 432563 + 172 - - pgpA BW25113_0418 - +putative NAD(P)H-dependent xylose reductase 432617 433591 - 324 - - yajO BW25113_0419 - +1-deoxyxylulose-5-phosphate synthase%3B flavoprotein 433771 435633 - 620 - - dxs BW25113_0420 - +- 435658 436557 - 299 - - ispA BW25113_0421 - +exonuclease VII%2C small subunit 436557 436799 - 80 - - xseB BW25113_0422 - +- 437005 438453 + 482 - - thiI BW25113_0423 - +- 438507 439097 - 196 - - yajL BW25113_0424 - +2-dehydropantoate 2-reductase 439060 439971 - 303 - - panE BW25113_0425 - +- 440139 440630 + 163 - - yajQ BW25113_0426 - +putative transport protein 440758 442122 - 454 - - yajR BW25113_0427 - +protoheme IX farnesyltransferase (haeme O biosynthesis) 442271 443161 - 296 - - cyoE BW25113_0428 - +- 443173 443502 - 109 - - cyoD BW25113_0429 - +- 443502 444116 - 204 - - cyoC BW25113_0430 - +- 444106 446097 - 663 - - cyoB BW25113_0431 - +- 446119 447066 - 315 - - cyoA BW25113_0432 - +regulates beta-lactamase synthesis 447526 449001 - 491 - - ampG BW25113_0433 - +putative polymerase/proteinase 449045 449623 - 192 - - yajG BW25113_0434 - +possible regulator of murein genes 449928 450245 + 105 - - bolA BW25113_0435 - +trigger factor%3B a molecular chaperone involved in cell division 450589 451887 + 432 - - tig BW25113_0436 - +ATP-dependent proteolytic subunit of clpA-clpP serine protease%2C heat shock protein F21.5 452133 452756 + 207 - - clpP BW25113_0437 - +ATP-dependent specificity component of clpP serine protease%2C chaperone 452882 454156 + 424 - - clpX BW25113_0438 - +DNA-binding%2C ATP-dependent protease La%3B heat shock K-protein 454344 456698 + 784 - - lon BW25113_0439 - +DNA-binding protein HU-beta%2C NS1 (HU-1) 456907 457179 + 90 - - hupB BW25113_0440 - +- 457371 459242 + 623 - - ppiD BW25113_0441 - +- 459393 459764 + 123 - - ybaV BW25113_0442 - +- 459858 460256 + 132 - - fadM BW25113_0443 - +- 460308 461003 - 231 - - queC BW25113_0444 - +- 461068 462768 - 566 - - ybaE BW25113_0445 - +- 462868 463686 + 272 - - cof BW25113_0446 - +putative LRP-like transcriptional regulator 463839 464297 + 152 - - ybaO BW25113_0447 - +- 464327 466099 + 590 - - mdlA BW25113_0448 - +- 466092 467873 + 593 - - mdlB BW25113_0449 - +nitrogen regulatory protein P-II 2 468054 468392 + 112 - - glnK BW25113_0450 - +probable ammonium transporter 468422 469708 + 428 - - amtB BW25113_0451 - +- 469757 470617 - 286 - - tesB BW25113_0452 - +glycoprotein/polysaccharide metabolism 470835 471407 + 190 - - ybaY BW25113_0453 - +- 471438 471827 - 129 - - ybaZ BW25113_0454 - +- 471904 472017 + 37 - - ffs BW25113_0455 - +- 472128 472481 + 117 - - ybaA BW25113_0456 - +- 472523 474073 - 516 - - ylaB BW25113_0457 - +- 474237 474707 - 156 - - ylaC BW25113_0458 - +- 474823 475374 - 183 - - maa BW25113_0459 - +haemolysin expression modulating protein 475546 475764 - 72 - - hha BW25113_0460 - +- 475790 476164 - 124 - - tomB BW25113_0461 - +acridine efflux pump 476710 479859 - 1049 - - acrB BW25113_0462 - +acridine efflux pump 479882 481075 - 397 - - acrA BW25113_0463 - +acrAB operon repressor 481217 481864 + 215 - - acrR BW25113_0464 - +mechanosensitive channel protein 481992 485354 + 1120 - - mscK BW25113_0465 - +- 485566 485727 - 53 - - ybaM BW25113_0466 - +- 485741 486268 - 175 - - priC BW25113_0467 - +putative gene 58 486338 486715 + 125 - - ybaN BW25113_0468 - +- 486868 487419 + 183 - - apt BW25113_0469 - +DNA polymerase III%2C tau and gamma subunits%3B DNA elongation factor III 487548 489479 + 643 - - dnaX BW25113_0470 - +- 489532 489861 + 109 - - ybaB BW25113_0471 - +recombination and repair 489861 490466 + 201 - - recR BW25113_0472 - +chaperone Hsp90%2C heat shock protein C 62.5 490576 492450 + 624 - - htpG BW25113_0473 - +adenylate kinase activity%3B pleiotropic effects on glycerol-3-phosphate acyltransferase activity 492631 493275 + 214 - - adk BW25113_0474 - +ferrochelatase: final enzyme of heme biosynthesis 493511 494473 + 320 - - hemH BW25113_0475 - +- 494470 495429 - 319 - - aes BW25113_0476 - +inosine-guanosine kinase 495581 496885 + 434 - - gsk BW25113_0477 - +putative transport protein 497018 498694 - 558 - - ybaL BW25113_0478 - +fosmidomycin resistance protein 498932 500152 - 406 - - fsr BW25113_0479 - +UDP-sugar hydrolase (5'-nucleotidase) 500370 502022 + 550 - - ushA BW25113_0480 - +- 502059 502538 - 159 - - ybaK BW25113_0481 - +- 502660 502743 + 27 - - chiX BW25113_4585 - +putative ligase 502742 503536 - 264 - - ybaP BW25113_0482 - +- 503674 504015 + 113 - - ybaQ BW25113_0483 - +- 504331 506835 - 834 - - copA BW25113_0484 - +putative glutaminase 507097 508029 + 310 - - glsA BW25113_0485 - +putative amino acid/amine transport protein 508032 509324 + 430 - - ybaT BW25113_0486 - +- 509449 509856 + 135 - - cueR BW25113_0487 - +- 509857 510315 - 152 - - ybbJ BW25113_0488 - +putative protease 510312 511229 - 305 - - qmcA BW25113_0489 - +putative ATP-binding component of a transport system 511375 512052 + 225 - - fetA BW25113_0490 - +putative metal resistance protein 512039 512818 + 259 - - fetB BW25113_0491 - +putative thioredoxin-like protein 512881 513735 - 284 - - ybbN BW25113_0492 - +- 513796 514605 - 269 - - ybbO BW25113_0493 - +acyl-CoA thioesterase I%3B also functions as protease I 514595 515221 - 208 - - tesA BW25113_0494 - +putative ATP-binding component of a transport system 515189 515875 + 228 - - ybbA BW25113_0495 - +putative oxidoreductase 515872 518286 + 804 - - ybbP BW25113_0496 - +rhsD protein in rhs element 518717 522997 + 1426 - - rhsD BW25113_0497 - +- 523037 523405 + 122 - - ybbC BW25113_0498 - +putative capsule anchoring protein 525588 526682 - 364 - - mnmH BW25113_0503 - +putative transcriptional regulator LYSR-type 526751 527677 - 308 - - allS BW25113_0504 - +- 527907 528389 + 160 - - allA BW25113_0505 - +- 528467 529282 + 271 - - allR BW25113_0506 - +- 529372 531153 + 593 - - gcl BW25113_0507 - +- 531166 531942 + 258 - - hyi BW25113_0508 - +- 532042 532920 + 292 - - glxR BW25113_0509 - +- 533089 534543 + 484 - - ybbW BW25113_0511 - +- 534603 535964 + 453 - - allB BW25113_0512 - +- 536021 537322 + 433 - - ybbY BW25113_0513 - +- 537344 538489 + 381 - - glxK BW25113_0514 - +- 538717 539502 - 261 - - allE BW25113_0515 - +- 539513 540748 - 411 - - allC BW25113_0516 - +- 540770 541819 - 349 - - allD BW25113_0517 - +involved in protein transport%3B multicopy suppressor of dominant negative ftsH mutants 542136 543803 + 555 - - fdrA BW25113_0518 - +- 543813 545072 + 419 - - ylbE BW25113_4572 - +putative carboxylase 545083 545898 + 271 - - ylbF BW25113_0520 - +putative carbamate kinase 545895 546788 + 297 - - ybcF BW25113_0521 - +phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C CO(2)-fixing subunit 546983 548050 - 355 - - purK BW25113_0522 - +phosphoribosylaminoimidazole carboxylase %3D AIR carboxylase%2C catalytic subunit 548047 548556 - 169 - - purE BW25113_0523 - +- 548674 549396 - 240 - - lpxH BW25113_0524 - +- 549399 549893 - 164 - - ppiB BW25113_0525 - +cysteine tRNA synthetase 550067 551452 + 461 - - cysS BW25113_0526 - +- 551488 552009 - 173 - - ybcI BW25113_0527 - +- 552117 552329 - 70 - - ybcJ BW25113_0528 - +5%2C10-methylene-tetrahydrofolate dehydrogenase%3B 5%2C10-methylene-tetrahydrofolate cyclohydrolase 552331 553197 - 288 - - folD BW25113_0529 - +putative fimbrial-like protein 553668 554210 + 180 - - sfmA BW25113_0530 - +putative chaperone 554430 555122 + 230 - - sfmC BW25113_0531 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/transit_tn5gaps.xml Tue Oct 08 08:24:46 2019 -0400 @@ -0,0 +1,119 @@ +<?xml version="1.0"?> +<tool id="transit_tn5gaps" name="Tn5Gaps" version="@VERSION@+galaxy1"> + <description>- determine essential genes</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"><![CDATA[ + @LINK_INPUTS@ + transit tn5gaps $input_files annotation.dat transit_out.txt + @STANDARD_OPTIONS@ + -m $smallest + ]]> + </command> + <inputs> + <expand macro="standard_inputs"> + <param name="smallest" argument="-m" type="integer" value="1" label="Smallest read-count to consider" /> + </expand> + </inputs> + <outputs> + <expand macro="outputs" /> + </outputs> + <tests> + <test> + <param name="inputs" ftype="wig" value="transit-in-tn5.wig,transit-in2-tn5.wig" /> + <param name="annotation" ftype="tabular" value="transit_tn5.prot" /> + <param name="replicates" value="Replicates" /> + <output name="sites" file="tn5gaps-sites1.txt" ftype="tabular" compare="sim_size" /> + </test> + </tests> + +<help><![CDATA[ +.. class:: infomark + +**What it does** + +------------------- + +This method is loosely is based on the original **Gumbel** analysis method. The **Gumbel** method can be used to determine which genes are essential in a single condition. It does a gene-by-gene analysis of the insertions at TA sites with each gene, makes a call based on the longest consecutive sequence of TA sites without insertion in the genes, calculates the probability of this using a Bayesian model. +The Tn5Gaps method modifies the original method in order to work on Tn5 datasets, which have significantly lower saturation of insertion sites than Himar1 datasets. The main difference comes from the fact that the runs of non-insertion (or “gaps”) are analyzed throughout the whole genome, including non-coding regions, instead of within single genes. In doing so, the expected maximum run length is calculated and a p-value can be derived for every run. A gene is then classified by using the p-value of the run with the largest number of nucleotides overlapping with the gene. + +------------------- + +**Inputs** + +------------------- + +Input files for Tn5Gaps need to be: + +- .wig files: Tabulated files containing one column with the TA site coordinate and one column with the read count at this site. +- annotation .prot_table: Annotation file generated by the `Convert Gff3 to prot_table for TRANSIT` tool. + + +------------------- + +**Parameters** + +------------------- + +Optional Arguments: + -m <integer> := Smallest read-count to consider. Default: -m 1 + -r <string> := How to handle replicates. Sum or Mean. Default: -r Sum + --iN <float> := Ignore TAs occuring at given fraction of the N terminus. Default: -iN 0.0 + --iC <float> := Ignore TAs occuring at given fraction of the C terminus. Default: -iC 0.0 + -n <string> := Determines which normalization method to use. Default -n TTR + +- Minimum Read: The minimum read count that is considered a true read. Because the Gumbel method depends on determining gaps of TA sites lacking insertions, it may be susceptible to spurious reads (e.g. errors). The default value of 1 will consider all reads as true reads. A value of 2, for example, will ignore read counts of 1. +- Replicates: Determines how to deal with replicates by averaging the read-counts or summing read counts across datasets. This should not have an affect for the Gumbel method, aside from potentially affecting spurious reads. +- Normalisation : + - TTR (Default) : Trimmed Total Reads (TTR), normalized by the total read-counts (like totreads), but trims top and bottom 5% of read-counts. This is the recommended normalization method for most cases as it has the beneffit of normalizing for difference in saturation in the context of resampling. + - nzmean : Normalizes datasets to have the same mean over the non-zero sites. + - totreads : Normalizes datasets by total read-counts, and scales them to have the same mean over all counts. + - zinfnb : Fits a zero-inflated negative binomial model, and then divides read-counts by the mean. The zero-inflated negative binomial model will treat some empty sites as belonging to the “true” negative binomial distribution responsible for read-counts while treating the others as “essential” (and thus not influencing its parameters). + - quantile : Normalizes datasets using the quantile normalization method described by Bolstad et al. (2003). In this normalization procedure, datasets are sorted, an empirical distribution is estimated as the mean across the sorted datasets at each site, and then the original (unsorted) datasets are assigned values from the empirical distribution based on their quantiles. + - betageom : Normalizes the datasets to fit an “ideal” Geometric distribution with a variable probability parameter p. Specially useful for datasets that contain a large skew. See Beta-Geometric Correction . + - nonorm : No normalization is performed. + + +------------------- + + **Outputs** + +------------------- + +============================================= ======================================================================================================================== +**Column Header** **Column Definition** +--------------------------------------------- ------------------------------------------------------------------------------------------------------------------------ +Orf Gene ID +Name Gene Name +Desc Gene Description +k Number of Transposon Insertions Observed within the ORF. +n Total Number of TA dinucleotides within the ORF. +r Span of nucleotides for the Maximum Run of Non-Insertions. +ovr The number of nucleotides in the overlap with the longest run partially covering the gene. +lenovr The length of the above run with the largest overlap with the gene. +pval P-value calculated by the permutation test. +padj Adjusted p-value controlling for the FDR (Benjamini-Hochberg). +State Call Essentiality call for the gene. Depends on FDR corrected thresholds. E=Essential U=Uncertain, NE=Non-Essential, S=too short +============================================= ======================================================================================================================== + + + +Note: Technically, Bayesian models are used to calculate posterior probabilities, not p-values (which is a concept associated with the frequentist framework). However, we have implemented a method for computing the approximate false-discovery rate (FDR) that serves a similar purpose. This determines a threshold for significance on the posterior probabilities that is corrected for multiple tests. The actual thresholds used are reported in the headers of the output file (and are near 1 for essentials and near 0 for non-essentials). There can be many genes that score between the two thresholds (t1 < zbar < t2). This reflects intrinsic uncertainty associated with either low read counts, sparse insertion density, or small genes. If the insertion_density is too low (< ~30%), the method may not work as well, and might indicate an unusually large number of Uncertain or Essential genes. + +------------------- + +**More Information** + +------------------- + +See `TRANSIT documentation` + +- TRANSIT: https://transit.readthedocs.io/en/latest/index.html +- `TRANSIT Tn5Gaps`: https://transit.readthedocs.io/en/latest/transit_methods.html#tn5gaps + ]]></help> + + <expand macro="citations" /> + +</tool>