Mercurial > repos > iuc > transtermhp
annotate all_fasta.loc.sample @ 2:1d8ad7599f02 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
author | iuc |
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date | Fri, 09 Oct 2015 09:40:48 -0400 |
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children | 1a1ec22a7e28 |
rev | line source |
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2
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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1 #This file lists the locations and dbkeys of all the fasta files |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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2 #under the "genome" directory (a directory that contains a directory |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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3 #for each build). The script extract_fasta.py will generate the file |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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4 #all_fasta.loc. This file has the format (white space characters are |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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5 #TAB characters): |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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6 # |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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7 #<unique_build_id> <dbkey> <display_name> <file_path> |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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8 # |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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9 #So, all_fasta.loc could look something like this: |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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10 # |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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14 # |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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15 #Your all_fasta.loc file should contain an entry for each individual |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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16 #fasta file. So there will be multiple fasta files for each build, |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
parents:
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17 #such as with hg19 above. |
1d8ad7599f02
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 236c8a825ceaeb15b1fed1ac64da3feea513df76
iuc
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18 # |