Mercurial > repos > iuc > transtermhp

comparison transtermhp.xml @ 5:012171ba9fce draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 7f6797ad21f1d9170bf38210d0f0fde5065dccfb"
author iuc
date Tue, 03 Dec 2019 08:56:57 -0500
parents 1a1ec22a7e28
children 42b38f6d9f68
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4:9a90656a1af9 5:012171ba9fce
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio"/> 7 <expand macro="stdio"/>
8 <command><![CDATA[ 8 <command><![CDATA[
9 ## fix for TRANSTERMHP not set on containers
10 TRANSTERMHP=\${TRANSTERMHP:-\$(dirname \$(command -v transterm))/../data/expterm.dat} &&
9 #if $reference_genome.source == 'history': 11 #if $reference_genome.source == 'history':
10 ln -s '$reference_genome.genome_fasta' genomeref.fa && 12 ln -s '$reference_genome.genome_fasta' genomeref.fa &&
11 #end if 13 #end if
12 14
13 python '$__tool_directory__/transtermhp.py' \$TRANSTERMHP 15 python '$__tool_directory__/transtermhp.py' \$TRANSTERMHP