Mercurial > repos > iuc > trinity
comparison tool_dependencies.xml @ 1:0067c78f49dc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1abd7a1cbd25b687267df2ebc4dfba5894797a64
| author | iuc |
|---|---|
| date | Wed, 09 Dec 2015 07:19:52 -0500 |
| parents | 606b7748965d |
| children | de0af39266ef |
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| 0:606b7748965d | 1:0067c78f49dc |
|---|---|
| 4 <repository changeset_revision="e65cf857feb6" name="package_trinity_2_0_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="e65cf857feb6" name="package_trinity_2_0_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="bowtie" version="1.1.2"> | 6 <package name="bowtie" version="1.1.2"> |
| 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <package name="samtools" version="0.1.19"> | 9 <package name="samtools" version="1.2"> |
| 10 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 10 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 11 </package> | 11 </package> |
| 12 <set_environment version="1.0"> | 12 <set_environment version="1.0"> |
| 13 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> | 13 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> |
| 14 </set_environment> | 14 </set_environment> |
| 15 </tool_dependency> | 15 </tool_dependency> |