Mercurial > repos > iuc > trinity

comparison align_and_estimate_abundance.xml @ 9:8bd817614cc8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit acdc3dfe5fd6317ae57899aa0e83130dff7460e7
author iuc
date Tue, 12 Jul 2016 11:36:37 -0400
parents 1b7800489efb
children
comparison
equal deleted inserted replaced
8:258c64019e50 9:8bd817614cc8
36 36
37 #if $inputs.strand.is_strand_specific: 37 #if $inputs.strand.is_strand_specific:
38 --SS_lib_type $inputs.strand.library_type 38 --SS_lib_type $inputs.strand.library_type
39 #end if 39 #end if
40 40
41 --max_ins_size $inputs.paired_fragment_length
42
41 #else: 43 #else:
42 --single $inputs.input 44 --single $inputs.input
43 45
44 #if $inputs.input.is_of_type('fasta'): 46 #if $inputs.input.is_of_type('fasta'):
45 --seqType fa 47 --seqType fa
49 51
50 #if $inputs.strand.is_strand_specific: 52 #if $inputs.strand.is_strand_specific:
51 --SS_lib_type $inputs.strand.library_type 53 --SS_lib_type $inputs.strand.library_type
52 #end if 54 #end if
53 #end if 55 #end if
54
55 --max_ins_size $inputs.paired_fragment_length
56 56
57 ## Additional parameters. 57 ## Additional parameters.
58 #if $additional_params.gene_map.has_gene_map == "no": 58 #if $additional_params.gene_map.has_gene_map == "no":
59 --gene_trans_map $additional_params.gene_map.gene_trans_map 59 --gene_trans_map $additional_params.gene_map.gene_trans_map
60 #else 60 #else