Mercurial > repos > iuc > trinity
comparison abundance_estimates_to_matrix.xml @ 3:c7555bc21812 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
| author | iuc |
|---|---|
| date | Tue, 03 May 2016 10:54:25 -0400 |
| parents | de0af39266ef |
| children | e4a9e0798360 |
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| 2:de0af39266ef | 3:c7555bc21812 |
|---|---|
| 24 #for $entry in $samples: | 24 #for $entry in $samples: |
| 25 "${entry.sample_name}.tsv" | 25 "${entry.sample_name}.tsv" |
| 26 #end for | 26 #end for |
| 27 ]]></command> | 27 ]]></command> |
| 28 <inputs> | 28 <inputs> |
| 29 <repeat name="samples" title="RSEM abundance estimates for samples"> | 29 <repeat name="samples" title="Abundance estimates for samples"> |
| 30 <param name="file" label="Add file" type="data" format="tabular"/> | 30 <param name="file" label="Add file" type="data" format="tabular"/> |
| 31 <param name="sample_name" label="Sample name" type="text"> | 31 <param name="sample_name" label="Sample name" type="text"> |
| 32 <validator type="regex" message="Value must be a not empty string composed by alphanumeric characters and underscores">^\w+$</validator> | 32 <validator type="regex" message="Value must be a not empty string composed by alphanumeric characters and underscores">^\w+$</validator> |
| 33 </param> | 33 </param> |
| 34 </repeat> | 34 </repeat> |
| 35 | 35 |
| 36 <param type="select" name="est_method" label="Abundance estimation method"> | 36 <param type="select" name="est_method" label="Abundance estimation method"> |
| 37 <option value="RSEM">RSEM</option> | 37 <option value="RSEM">RSEM</option> |
| 38 <option value="eXpress">eXpress</option> | 38 <option value="eXpress">eXpress</option> |
| 39 </param> | 39 </param> |
| 40 | 40 |
| 196 | 196 |
| 197 | 197 |
| 198 .. _Trinity: http://trinityrnaseq.github.io | 198 .. _Trinity: http://trinityrnaseq.github.io |
| 199 ]]> | 199 ]]> |
| 200 </help> | 200 </help> |
| 201 | 201 |
| 202 <citations> | 202 <citations> |
| 203 <citation type="doi">doi:10.1038/nbt.1883</citation> | 203 <citation type="doi">doi:10.1038/nbt.1883</citation> |
| 204 </citations> | 204 </citations> |
| 205 </tool> | 205 </tool> |
| 206 | 206 |