Mercurial > repos > iuc > trinity
comparison tool_dependencies.xml @ 3:c7555bc21812 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
| author | iuc |
|---|---|
| date | Tue, 03 May 2016 10:54:25 -0400 |
| parents | de0af39266ef |
| children | 692491de7df5 |
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| 2:de0af39266ef | 3:c7555bc21812 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="trinity" version="2.1.1"> | 3 <package name="trinity" version="2.1.1"> |
| 4 <repository changeset_revision="b66b28a11557" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="f75117647d9c" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="bowtie" version="1.1.2"> | 6 <package name="bowtie" version="1.1.2"> |
| 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <package name="bowtie2" version="2.2.6"> | 9 <package name="bowtie2" version="2.2.6"> |
| 23 </package> | 23 </package> |
| 24 <package name="limma" version="3.27.4"> | 24 <package name="limma" version="3.27.4"> |
| 25 <repository changeset_revision="7c305aa20292" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 25 <repository changeset_revision="7c305aa20292" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 26 </package> | 26 </package> |
| 27 <package name="deseq2" version="1.10.0"> | 27 <package name="deseq2" version="1.10.0"> |
| 28 <repository changeset_revision="362a2224b1d2" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 28 <repository changeset_revision="56a98b4043fd" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 29 </package> | 29 </package> |
| 30 <set_environment version="1.0"> | 30 <set_environment version="1.0"> |
| 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> | 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> |
| 32 </set_environment> | 32 </set_environment> |
| 33 </tool_dependency> | 33 </tool_dependency> |