Mercurial > repos > iuc > trinity
comparison trinity.xml @ 22:c9cfec002f71 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 4b89602ac841ab33422b27a4267916de96101bf5
| author | iuc |
|---|---|
| date | Wed, 17 Oct 2018 12:56:30 -0400 |
| parents | 171b827eadf2 |
| children | 26d5493b20b6 |
comparison
equal
deleted
inserted
replaced
| 21:ca0588b09438 | 22:c9cfec002f71 |
|---|---|
| 188 <expand macro="input_paired_strand_jaccard" /> | 188 <expand macro="input_paired_strand_jaccard" /> |
| 189 </when> | 189 </when> |
| 190 </conditional> | 190 </conditional> |
| 191 </when> | 191 </when> |
| 192 </conditional> | 192 </conditional> |
| 193 <param name="norm" type="boolean" argument="--normalize_reads" truevalue="--normalize_reads" falsevalue="" checked="true" label="Run in silico normalization of reads" help="Defaults to max. read coverage of 50."/> | 193 <param name="norm" type="boolean" argument="--no_normalize_reads" truevalue="" falsevalue="--no_normalize_reads" checked="true" label="Run in silico normalization of reads" help="Defaults to max. read coverage of 50."/> |
| 194 <section name="additional_params" title="Additional Options" expanded="False"> | 194 <section name="additional_params" title="Additional Options" expanded="False"> |
| 195 <param name="min_contig_length" argument="--min_contig_length" type="integer" optional="true" value="200" min="1" label="Minimum Contig Length" help="All contigs shorter than this will be discarded"/> | 195 <param name="min_contig_length" argument="--min_contig_length" type="integer" optional="true" value="200" min="1" label="Minimum Contig Length" help="All contigs shorter than this will be discarded"/> |
| 196 | 196 |
| 197 <conditional name="guided"> | 197 <conditional name="guided"> |
| 198 <param name="is_guided" type="select" label="Use the genome guided mode?" help="If you already mapped the reads to the genome, Trinity can use this information"> | 198 <param name="is_guided" type="select" label="Use the genome guided mode?" help="If you already mapped the reads to the genome, Trinity can use this information"> |