Mercurial > repos > iuc > trinity
comparison macros.xml @ 21:ca0588b09438 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 482fb46ba8d588f2294e21829a0904809b0ec3f1
| author | iuc |
|---|---|
| date | Thu, 23 Aug 2018 12:54:35 -0400 |
| parents | 171b827eadf2 |
| children | c9cfec002f71 |
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| 20:171b827eadf2 | 21:ca0588b09438 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <xml name="requirements"> | 3 <xml name="requirements"> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.6.6">trinity</requirement> | 5 <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement> |
| 6 <yield/> | 6 <yield/> |
| 7 </requirements> | 7 </requirements> |
| 8 </xml> | 8 </xml> |
| 9 | 9 |
| 10 <token name="@WRAPPER_VERSION@">2.6.6</token> | 10 <token name="@WRAPPER_VERSION@">2.8.3</token> |
| 11 | 11 |
| 12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> | 12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> |
| 13 #if $pool.inputs.strand.is_strand_specific: | 13 #if $pool.inputs.strand.is_strand_specific: |
| 14 --SS_lib_type $pool.inputs.strand.library_type | 14 --SS_lib_type $pool.inputs.strand.library_type |
| 15 #end if | 15 #end if |
| 26 <option value="FR">Forward-Reverse</option> | 26 <option value="FR">Forward-Reverse</option> |
| 27 <option value="RF">Reverse-Forward</option> | 27 <option value="RF">Reverse-Forward</option> |
| 28 </param> | 28 </param> |
| 29 </when> | 29 </when> |
| 30 </conditional> | 30 </conditional> |
| 31 <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> | 31 <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> |
| 32 </xml> | 32 </xml> |
| 33 | 33 |
| 34 <xml name="citation"> | 34 <xml name="citation"> |
| 35 <citations> | 35 <citations> |
| 36 <citation type="doi">10.1038/nbt.1883</citation> | 36 <citation type="doi">10.1038/nbt.1883</citation> |