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comparison tool_dependencies.xml @ 2:de0af39266ef draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 77385ec02b79f527348aff01bd83a019e30f5f45
author iuc
date Mon, 25 Apr 2016 10:02:37 -0400
parents 0067c78f49dc
children c7555bc21812
comparison
equal deleted inserted replaced
1:0067c78f49dc 2:de0af39266ef
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="trinity" version="2.0.6"> 3 <package name="trinity" version="2.1.1">
4 <repository changeset_revision="e65cf857feb6" name="package_trinity_2_0_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="b66b28a11557" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bowtie" version="1.1.2"> 6 <package name="bowtie" version="1.1.2">
7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bowtie2" version="2.2.6">
10 <repository changeset_revision="0d9cd7487cc9" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
9 <package name="samtools" version="1.2"> 12 <package name="samtools" version="1.2">
10 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="edger" version="3.12.0">
16 <repository changeset_revision="5c1431123155" name="package_r_edger_3_12_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="rsem" version="1.2.28">
19 <repository changeset_revision="4567331d510a" name="package_rsem_1_2_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="express" version="1.5.1">
22 <repository changeset_revision="93017e8743e5" name="package_express_1_5_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="limma" version="3.27.4">
25 <repository changeset_revision="7c305aa20292" name="package_r_limma_3_27_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="deseq2" version="1.10.0">
28 <repository changeset_revision="362a2224b1d2" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 29 </package>
12 <set_environment version="1.0"> 30 <set_environment version="1.0">
13 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>
14 </set_environment> 32 </set_environment>
15 </tool_dependency> 33 </tool_dependency>