changeset 9:8bd817614cc8 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit acdc3dfe5fd6317ae57899aa0e83130dff7460e7
author iuc
date Tue, 12 Jul 2016 11:36:37 -0400
parents 258c64019e50
children 831abd20e690
files align_and_estimate_abundance.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/align_and_estimate_abundance.xml	Tue Jun 28 12:22:40 2016 -0400
+++ b/align_and_estimate_abundance.xml	Tue Jul 12 11:36:37 2016 -0400
@@ -38,6 +38,8 @@
                 --SS_lib_type $inputs.strand.library_type
             #end if
 
+            --max_ins_size $inputs.paired_fragment_length
+
         #else:
             --single $inputs.input
 
@@ -52,8 +54,6 @@
             #end if
         #end if
 
-        --max_ins_size $inputs.paired_fragment_length
-
         ## Additional parameters.
         #if $additional_params.gene_map.has_gene_map == "no":
             --gene_trans_map $additional_params.gene_map.gene_trans_map
--- a/tool_dependencies.xml	Tue Jun 28 12:22:40 2016 -0400
+++ b/tool_dependencies.xml	Tue Jul 12 11:36:37 2016 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="trinity" version="2.1.1">
-        <repository changeset_revision="cec8b7f159c5" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="1585b0b46b84" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="bowtie" version="1.1.2">
         <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />