Mercurial > repos > iuc > trinity
changeset 5:e4a9e0798360 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 88c982c5adcd32b11d98428fc554a4fdfcc19584
| author | iuc |
|---|---|
| date | Tue, 07 Jun 2016 10:26:04 -0400 |
| parents | 692491de7df5 |
| children | f7564c3f9dc0 |
| files | abundance_estimates_to_matrix.xml align_and_estimate_abundance.xml run_DE_analysis.xml samples_qccheck.xml tool_dependencies.xml trinity.xml |
| diffstat | 6 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/abundance_estimates_to_matrix.xml Thu May 12 07:02:10 2016 -0400 +++ b/abundance_estimates_to_matrix.xml Tue Jun 07 10:26:04 2016 -0400 @@ -200,7 +200,7 @@ </help> <citations> - <citation type="doi">doi:10.1038/nbt.1883</citation> + <citation type="doi">10.1038/nbt.1883</citation> </citations> </tool>
--- a/align_and_estimate_abundance.xml Thu May 12 07:02:10 2016 -0400 +++ b/align_and_estimate_abundance.xml Tue Jun 07 10:26:04 2016 -0400 @@ -254,7 +254,7 @@ </help> <citations> - <citation type="doi">doi:10.1038/nbt.1883</citation> + <citation type="doi">10.1038/nbt.1883</citation> </citations> </tool>
--- a/run_DE_analysis.xml Thu May 12 07:02:10 2016 -0400 +++ b/run_DE_analysis.xml Tue Jun 07 10:26:04 2016 -0400 @@ -140,7 +140,7 @@ </help> <citations> - <citation type="doi">doi:10.1038/nbt.1883</citation> + <citation type="doi">10.1038/nbt.1883</citation> </citations> </tool>
--- a/samples_qccheck.xml Thu May 12 07:02:10 2016 -0400 +++ b/samples_qccheck.xml Tue Jun 07 10:26:04 2016 -0400 @@ -108,7 +108,7 @@ </help> <citations> - <citation type="doi">doi:10.1038/nbt.1883</citation> + <citation type="doi">10.1038/nbt.1883</citation> </citations> </tool>
--- a/tool_dependencies.xml Thu May 12 07:02:10 2016 -0400 +++ b/tool_dependencies.xml Tue Jun 07 10:26:04 2016 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="trinity" version="2.1.1"> - <repository changeset_revision="f75117647d9c" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c61a7ad47fb7" name="package_trinity_2_1_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bowtie" version="1.1.2"> <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> @@ -25,7 +25,7 @@ <repository changeset_revision="4fa8ed0ffea1" name="package_r_limma_3_28_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="deseq2" version="1.10.0"> - <repository changeset_revision="56a98b4043fd" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="e4a11a7d33d6" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <set_environment version="1.0"> <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>