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diff test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.edgeR.DE_results @ 10:13ab393ba794 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
author iuc
date Thu, 14 Jun 2018 03:12:12 -0400
parents 77fc547df6ff
children a009c96c5c18
line wrap: on
line diff
--- a/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.edgeR.DE_results	Mon Jan 22 11:28:19 2018 -0500
+++ b/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.edgeR.DE_results	Thu Jun 14 03:12:12 2018 -0400
@@ -1,39 +1,38 @@
-logFC	logCPM	PValue	FDR
-TR131|c0_g1_i1	5.8364197685119	16.0402624962907	0	0
-TR4277|c0_g1_i1	-4.41329137350676	17.4523259866001	0	0
-TR3091|c0_g1_i1	4.45193883524837	14.0450613692144	2.75977672027703e-191	3.0023764016608e-190
-TR4761|c0_g1_i1	-2.92753980838104	16.3343761538543	3.16039621227453e-191	3.0023764016608e-190
-TR2487|c0_g1_i1	1.58705373680526	15.8895982491351	1.69098562804069e-123	1.28514907731092e-122
-TR1479|c0_g1_i1	1.67068054401246	14.5625418524933	4.82942248775202e-81	3.05863424224295e-80
-TR3638|c0_g1_i1	-1.49936398500381	15.1049693447894	1.31792237756209e-64	7.15443576390849e-64
-TR3854|c0_g1_i1	0.756865722480515	17.5147652035186	8.35417282711821e-40	3.96823209288115e-39
-TR2122|c0_g2_i2	0.903942128151819	13.8996874045924	3.62505920095794e-13	1.53058055151558e-12
-TR2844|c0_g1_i1	0.707836713891037	14.1854217777842	1.87464339893047e-12	7.1236449159358e-12
-TR3788|c0_g1_i1	2.92403132462783	12.8779140660683	1.50355808369265e-09	5.19410974366551e-09
-TR4669|c0_g2_i1	10.5374101870061	13.0322839834498	3.83881845042015e-08	1.21562584263305e-07
-TR2672|c0_g1_i1	-2.77697626464917	10.2324144831548	6.6653206315345e-08	1.9483244922947e-07
-TR4163|c0_g1_i1	-0.420124679057253	14.7293558096347	2.6407759845512e-06	7.16782052949613e-06
-TR2107|c1_g1_i1	-2.54740509831049	11.4796217709789	1.31520100526586e-05	3.33184254667352e-05
-TR2779|c0_g1_i1	0.57151150266807	14.0680960027645	7.44562831370785e-05	0.000176833672450561
-TR127|c1_g1_i1	-3.25307512484374	9.84850588284066	0.000331345441643876	0.000740654516615722
-TR1894|c2_g1_i1	-1.90241917506329	9.93135664117576	0.00432077639530722	0.00912163905675968
-TR5055|c0_g2_i1	-1.8950478385132	10.598211984773	0.00591755208579545	0.0118351041715909
-TR2090|c0_g1_i1	6.41050251489574	9.11635750687386	0.0113096900461153	0.021488411087619
-TR5212|c0_g1_i1	0.867439938079617	13.0331405503531	0.0317111501604761	0.0573820812427663
-TR3807|c0_g1_i1	-2.67963301995355	8.56046890206839	0.0557212159288941	0.0962457366044534
-TR1449|c0_g1_i1	-0.636836241811875	13.7146214195087	0.0845994280568489	0.139772968093924
-TR4084|c0_g1_i1	0.527023803952886	13.333880353991	0.19596368831627	0.301997237380275
-TR1891|c0_g1_i1	0.481345196849859	13.5019985083809	0.198682393013339	0.301997237380275
-TR24|c0_g1_i1	-0.590671163985234	12.3854267629296	0.21115333494008	0.308608720297039
-TR1837|c2_g1_i1	2.67943439258847	8.19914223144978	0.242162966500684	0.336820885113627
-TR4859|c0_g1_i1	-1.04273446956489	9.43870802835889	0.248183810083725	0.336820885113627
-TR939|c0_g1_i1	0.361607908864682	13.0838256643577	0.341542524228359	0.447538480023367
-TR2011|c5_g1_i1	0.672074276530526	9.63297397547156	0.357699118838244	0.453085550528442
-TR5075|c0_g1_i1	-0.617596452044795	10.4317228965746	0.378826401739151	0.464367847293153
-TR3249|c0_g1_i1	0.936067544593607	8.34110243846743	0.532174466327564	0.631957178763983
-TR1492|c0_g1_i2	-0.0311770185465736	17.1360846492483	0.562063331952301	0.647224442854165
-TR2278|c0_g1_i1	0.0373157391528861	15.4251088322423	0.63557189922311	0.710345063837593
-TR2182|c3_g2_i6	-0.665499179094881	8.45651702709919	0.835363486459349	0.906966071013008
-TR1982|c2_g1_i1	0.176241441184615	9.49445846907393	0.904611213246767	0.954867391760477
-TR1678|c0_g1_i1	0.476522568809639	7.93710096737952	1	1
-TR1122|c0_g1_i1	-0.015204817268041	8.26206767263358	1	1
+sampleA	sampleB	logFC	logCPM	PValue	FDR
+TR131|c0_g1_i1	wt_37	wt_GSNO	-5.83641794955382	16.0393491449056	0	0
+TR4277|c0_g1_i1	wt_37	wt_GSNO	4.41329536892161	17.453649857324	0	0
+TR3091|c0_g1_i1	wt_37	wt_GSNO	-4.45192710783926	14.0403115023365	4.66239713643175e-192	5.75028980159916e-191
+TR4761|c0_g1_i1	wt_37	wt_GSNO	2.92754337500687	16.3361488759619	3.05265683396309e-191	2.82370757141586e-190
+TR2487|c0_g1_i1	wt_37	wt_GSNO	-1.58705168340508	15.8893887856701	9.57106937146597e-124	7.08259133488482e-123
+TR1479|c0_g1_i1	wt_37	wt_GSNO	-1.67065982572176	14.5610246448295	4.39649357092684e-84	2.71117103540489e-83
+TR3638|c0_g1_i1	wt_37	wt_GSNO	1.49937182627392	15.1071990563814	1.60652562072048e-64	8.49163542380826e-64
+TR3854|c0_g1_i1	wt_37	wt_GSNO	-0.756864683109858	17.5153338325952	9.14141417630157e-40	4.22790405653948e-39
+TR2122|c0_g2_i2	wt_37	wt_GSNO	-0.90394318029981	13.8984589155106	3.98287653266084e-13	1.63740479676057e-12
+TR2844|c0_g1_i1	wt_37	wt_GSNO	-0.707834005847516	14.1849675326065	1.90004997002049e-12	7.0301848890758e-12
+TR3788|c0_g1_i1	wt_37	wt_GSNO	-2.92402824575823	12.8707284018497	1.35908019280542e-09	4.57145155761824e-09
+TR4669|c0_g2_i1	wt_37	wt_GSNO	-10.5373989771184	13.0207784411552	2.87822490296537e-08	8.87452678414323e-08
+TR2672|c0_g1_i1	wt_37	wt_GSNO	2.77705541360002	10.2430402179839	7.41806563943484e-08	2.11129560506992e-07
+TR4163|c0_g1_i1	wt_37	wt_GSNO	0.420123134789911	14.7306522277754	2.74345107938324e-06	7.25054928122714e-06
+TR127|c1_g1_i1	wt_37	wt_GSNO	3.26487561187968	9.85808314705506	6.1191913603037e-06	1.50940053554158e-05
+TR2107|c1_g1_i1	wt_37	wt_GSNO	2.54741701164587	11.489948731934	1.24782096095324e-05	2.88558597220436e-05
+TR2779|c0_g1_i1	wt_37	wt_GSNO	-0.571512278204146	14.0677635717422	7.39487278515011e-05	0.000160947231206208
+TR1894|c2_g1_i1	wt_37	wt_GSNO	1.88989717290856	9.93884262525918	0.00064827406279645	0.00133256335130381
+TR5055|c0_g2_i1	wt_37	wt_GSNO	1.89504810994952	10.6064804346292	0.00584438080176016	0.011381162613954
+TR3807|c0_g1_i1	wt_37	wt_GSNO	2.66606066906632	8.56455983886691	0.0188051214716541	0.0347894747225602
+TR5212|c0_g1_i1	wt_37	wt_GSNO	-0.867441722907523	13.0312878134755	0.0313380642877521	0.055214684697468
+TR1449|c0_g1_i1	wt_37	wt_GSNO	0.636828244112651	13.716963541734	0.0836258106887223	0.140643408885578
+TR1837|c2_g1_i1	wt_37	wt_GSNO	-2.70136949048315	8.19724487849862	0.11443273811818	0.184087448277072
+TR4859|c0_g1_i1	wt_37	wt_GSNO	1.06021338602227	9.44252758756623	0.17021260004507	0.262411091736149
+TR4084|c0_g1_i1	wt_37	wt_GSNO	-0.527027354857722	13.3333941866224	0.195100037539558	0.280916147575458
+TR1891|c0_g1_i1	wt_37	wt_GSNO	-0.481344817930584	13.5015018099629	0.197400536134106	0.280916147575458
+TR24|c0_g1_i1	wt_37	wt_GSNO	0.590686928315332	12.3882336221811	0.209814398393357	0.287523434835341
+TR2011|c5_g1_i1	wt_37	wt_GSNO	-0.668008806764204	9.63014074618193	0.239244885423374	0.316145027166602
+TR939|c0_g1_i1	wt_37	wt_GSNO	-0.361607139894815	13.0833886152319	0.340252678428006	0.434115486270215
+TR5075|c0_g1_i1	wt_37	wt_GSNO	0.617585416067661	10.4358029661318	0.377913209145196	0.466092957945741
+TR1492|c0_g1_i2	wt_37	wt_GSNO	0.0311900896664335	17.1368189470585	0.559289231968699	0.657620159615942
+TR3249|c0_g1_i1	wt_37	wt_GSNO	-0.894241538356016	8.33957569586088	0.568752570478653	0.657620159615942
+TR2278|c0_g1_i1	wt_37	wt_GSNO	-0.0373200220187202	15.4258149088647	0.636489077475997	0.713639268685208
+TR2182|c3_g2_i6	wt_37	wt_GSNO	0.714549920613349	8.45775163335771	0.790296098133788	0.860028106792652
+TR1982|c2_g1_i1	wt_37	wt_GSNO	-0.181275971858276	9.49467590956657	0.873422282667325	0.923332127391172
+TR1678|c0_g1_i1	wt_37	wt_GSNO	-0.476606391142577	7.93769527756871	1	1
+TR1122|c0_g1_i1	wt_37	wt_GSNO	0.0647357997613641	8.26206759454538	1	1