Mercurial > repos > iuc > trinity_abundance_estimates_to_matrix
diff test-data/count/exp_diff/input.matrix.wt_GSNO_vs_wt_ph8.DESeq2.DE_results @ 10:13ab393ba794 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
| author | iuc |
|---|---|
| date | Thu, 14 Jun 2018 03:12:12 -0400 |
| parents | 8b5039bdf1f6 |
| children | a009c96c5c18 |
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--- a/test-data/count/exp_diff/input.matrix.wt_GSNO_vs_wt_ph8.DESeq2.DE_results Mon Jan 22 11:28:19 2018 -0500 +++ b/test-data/count/exp_diff/input.matrix.wt_GSNO_vs_wt_ph8.DESeq2.DE_results Thu Jun 14 03:12:12 2018 -0400 @@ -1,40 +1,40 @@ sampleA sampleB baseMeanA baseMeanB baseMean log2FoldChange lfcSE stat pvalue padj -TR2779|c0_g1_i1 wt_GSNO wt_ph8 195.849684476753 966.924129135581 581.386906806167 -2.26327524632747 0.139880929176731 -16.1800129556472 6.97797522934818e-59 2.3027318256849e-57 -TR1891|c0_g1_i1 wt_GSNO wt_ph8 128.246229498835 343.028289972482 235.637259735659 -1.40437008666625 0.103208263182426 -13.6071477550587 3.63141533276091e-42 5.99183529905551e-41 -TR4761|c0_g1_i1 wt_GSNO wt_ph8 184.029205648389 351.782300021135 267.905752834762 -0.934295661860181 0.0925945355062913 -10.0901814210915 6.10565695161207e-24 6.71622264677328e-23 -TR24|c0_g1_i1 wt_GSNO wt_ph8 39.3724575919554 183.288101009647 111.330279300801 -2.12198385961523 0.229366226812664 -9.25150964508988 2.21344016014191e-20 1.82608813211707e-19 -TR3638|c0_g1_i1 wt_GSNO wt_ph8 174.266398355818 297.555274221606 235.910836288712 -0.755625651268871 0.0961172743232099 -7.86149687024996 3.79569918101421e-15 2.50516145946938e-14 -TR2122|c0_g2_i2 wt_GSNO wt_ph8 190.673533226329 328.707071692642 259.690302459485 -0.781951344246178 0.102125767694546 -7.65674875105918 1.90699193392882e-14 1.04884556366085e-13 -TR2278|c0_g1_i1 wt_GSNO wt_ph8 426.804298570637 315.99710709695 371.400702833793 0.428907012124225 0.105320470989525 4.07239929801383 4.65313200258197e-05 0.000219361937264579 -TR4084|c0_g1_i1 wt_GSNO wt_ph8 115.544575735664 157.970364768418 136.757470252041 -0.434913653199297 0.157209464946713 -2.76645972522529 0.00566685842046991 0.0233757909844384 -TR3788|c0_g1_i1 wt_GSNO wt_ph8 128.115824993653 24.010679388938 76.0632521912957 1.36551096405932 0.534260069919225 2.55589186043003 0.0105916029199559 0.0388358773731717 -TR1492|c0_g1_i2 wt_GSNO wt_ph8 1368.89238848897 813.514514376559 1091.20345143276 0.692062260203308 0.290167592747528 2.38504325603812 0.0170771132686324 0.0563544737864868 -TR1678|c0_g1_i1 wt_GSNO wt_ph8 0.695005959508731 7.10082184137838 3.89791390044355 -1.19229893380239 0.533516728634619 -2.23479203145837 0.0254310052417055 0.0762930157251164 -TR5075|c0_g1_i1 wt_GSNO wt_ph8 8.81552188359314 126.23137395943 67.5234479215117 -1.10768013972448 0.513345367512952 -2.15776786900981 0.0309458842036983 0.0851011815601704 -TR1479|c0_g1_i1 wt_GSNO wt_ph8 353.92669362375 305.546165789569 329.736429706659 0.210154850632672 0.101920088147959 2.06195711219939 0.0392118193266939 0.0995376952139152 -TR1859|c3_g1_i1 wt_GSNO wt_ph8 0 2.05957798928713 1.02978899464357 -1.01742987508067 0.500302018271162 -2.03363136250477 0.0419887772494581 1 -TR2844|c0_g1_i1 wt_GSNO wt_ph8 220.566338218013 194.214843050373 207.390590634193 0.185176880395552 0.100284765132021 1.84651058564851 0.0648181037840442 0.152785530348104 -TR2107|c1_g1_i1 wt_GSNO wt_ph8 7.08292121571621 1.78415791317121 4.43353956444371 0.951944042839851 0.540599552522162 1.76090423752399 0.0782546125949942 0.170760316089935 -TR4669|c0_g2_i1 wt_GSNO wt_ph8 165.630009730314 0 82.8150048651569 0.762969565911357 0.439826422982926 1.73470607049221 0.0827928805284532 0.170760316089935 -TR2672|c0_g1_i1 wt_GSNO wt_ph8 2.07518941673641 7.44710458698621 4.76114700186131 -0.686459125319668 0.52860452101472 -1.29862514986048 0.194072602638997 0.376729169828641 -TR4859|c0_g1_i1 wt_GSNO wt_ph8 3.10763825129944 1.1806627783491 2.14415051482427 0.593225714064679 0.537217960853533 1.10425517628294 0.269482460872864 0.494051178266917 -TR3091|c0_g1_i1 wt_GSNO wt_ph8 312.47018793986 293.531643106953 303.000915523406 0.0878939148373507 0.0878811164283744 1.00014563320878 0.317240035048796 0.536180698490786 -TR4163|c0_g1_i1 wt_GSNO wt_ph8 221.469120691076 207.118822998308 214.293971844692 0.0959413488001967 0.0974696330347526 0.984320406397642 0.324957999085325 0.536180698490786 -TR1894|c2_g1_i1 wt_GSNO wt_ph8 2.85762748931802 1.47338219762144 2.16550484346973 0.431530486406946 0.537372709941065 0.803037590900872 0.421953007665329 0.663069012045517 -TR3249|c0_g1_i1 wt_GSNO wt_ph8 2.06512931203634 4.15451161800812 3.10982046502223 -0.38612563978518 0.523142120053183 -0.738089373774619 0.460460140618999 0.675718500003336 -TR5212|c0_g1_i1 wt_GSNO wt_ph8 102.736339436612 86.4452993262187 94.5908193814151 0.226915890105892 0.314756340859895 0.720925556212693 0.470955318184143 0.675718500003336 -TR1122|c0_g1_i1 wt_GSNO wt_ph8 1.29006258579706 0.5946183773076 0.942340481552333 0.279366026492593 0.486443515520964 0.57430311552905 0.565762701275693 1 -TR2011|c5_g1_i1 wt_GSNO wt_ph8 7.597917075274 4.42090354598533 6.00941031062966 0.293830308686626 0.525066976727929 0.559605386950241 0.575748629670957 0.791654365797565 -TR1837|c2_g1_i1 wt_GSNO wt_ph8 2.16507864525674 1.46465683073113 1.81486773799393 0.232644077202222 0.530765383353658 0.438318105322267 0.661155703054792 1 -TR1982|c2_g1_i1 wt_GSNO wt_ph8 5.5352448786851 10.687042573374 8.11114372602957 -0.163617497783336 0.41190705551325 -0.397219459082736 0.691205633846634 0.874699343226649 -TR1449|c0_g1_i1 wt_GSNO wt_ph8 98.9943307118646 106.843279101242 102.918804906553 -0.100378154615576 0.259464578599584 -0.38686650469729 0.69885503944156 0.874699343226649 -TR2182|c3_g2_i6 wt_GSNO wt_ph8 1.29006258579706 1.76655578876639 1.52830918728173 -0.199699696686908 0.518464312092113 -0.385175395932417 0.700107470922461 1 -TR4277|c0_g1_i1 wt_GSNO wt_ph8 153.969096204861 149.159426886469 151.564261545665 0.0459499001744168 0.126145529370448 0.364261027748966 0.715663099003622 0.874699343226649 -TR3854|c0_g1_i1 wt_GSNO wt_ph8 2260.55060252051 1927.46472630351 2094.00766441201 0.149461409336011 0.515737174792397 0.289801504799756 0.771968096584582 0.909819542403257 -TR127|c1_g1_i1 wt_GSNO wt_ph8 1.20754470361908 1.49113571265046 1.34934020813477 -0.140499936513031 0.525109891787989 -0.267562921038549 0.789035775295455 1 -TR2090|c0_g1_i1 wt_GSNO wt_ph8 9.46045896251181 5.6546754787973 7.55756722065455 0.0558182109444541 0.287850208274631 0.193914089133468 0.846243151562143 0.956832805790417 -TR3807|c0_g1_i1 wt_GSNO wt_ph8 0.347502979754365 0.292870809896544 0.320186894825454 0.0816135421729034 0.465942705668376 0.175157892118586 0.860955569985101 1 -TR131|c0_g1_i1 wt_GSNO wt_ph8 1275.67603302799 1312.2934796972 1293.9847563626 -0.035805337908038 0.355352253126282 -0.100760126305753 0.919740880292126 0.956832805790417 -TR5055|c0_g2_i1 wt_GSNO wt_ph8 5.17791343714095 5.60171771495863 5.38981557604979 -0.0489219520111245 0.535247232645477 -0.091400663146498 0.927174234841818 0.956832805790417 -TR939|c0_g1_i1 wt_GSNO wt_ph8 92.2508462008296 94.0990807885678 93.1749634946987 -0.0260132924520656 0.31360944301959 -0.0829480522065804 0.933892845523313 0.956832805790417 -TR2487|c0_g1_i1 wt_GSNO wt_ph8 875.181494043204 882.631049341941 878.906271692572 -0.0117684251443531 0.217416529127567 -0.0541284749212796 0.956832805790417 0.956832805790417 +TR2779|c0_g1_i1 wt_GSNO wt_ph8 195.849684476753 966.924129135581 581.386906806167 -2.30255444666643 0.142496869452374 -16.1586318037394 9.87286349195067e-59 3.65295949202175e-57 +TR1891|c0_g1_i1 wt_GSNO wt_ph8 128.246229498835 343.028289972482 235.637259735659 -1.41742353970608 0.104322254921725 -13.5869718380762 4.7847024102546e-42 8.85169945897101e-41 +TR4761|c0_g1_i1 wt_GSNO wt_ph8 184.029205648389 351.782300021135 267.905752834762 -0.941259207260894 0.0933372308442124 -10.0844989587481 6.46943903995441e-24 7.97897481594377e-23 +TR24|c0_g1_i1 wt_GSNO wt_ph8 39.3724575919554 183.288101009647 111.330279300801 -2.22846767043702 0.242443002218043 -9.19171784728532 3.8661704482204e-20 3.57620766460387e-19 +TR3638|c0_g1_i1 wt_GSNO wt_ph8 174.266398355818 297.555274221606 235.910836288712 -0.761689698593786 0.0969314803260852 -7.85802193499368 3.90246977317854e-15 2.88782763215212e-14 +TR2122|c0_g2_i2 wt_GSNO wt_ph8 190.673533226329 328.707071692642 259.690302459485 -0.789061688115738 0.103094089827306 -7.65380139091878 1.95123561208803e-14 1.20326196078762e-13 +TR4669|c0_g2_i1 wt_GSNO wt_ph8 165.630009730314 0 82.8150048651569 9.98638581786287 2.4059110197361 4.15077105343582 3.31357095211564e-05 0.000175145893183255 +TR2278|c0_g1_i1 wt_GSNO wt_ph8 426.804298570637 315.99710709695 371.400702833793 0.433055347501052 0.106340324733669 4.07235306630524 4.65405596936774e-05 0.000215250088583258 +TR4084|c0_g1_i1 wt_GSNO wt_ph8 115.544575735664 157.970364768418 136.757470252041 -0.444508945050626 0.160721197310781 -2.76571449496544 0.00567982380522758 0.0233503867548245 +TR3788|c0_g1_i1 wt_GSNO wt_ph8 128.115824993653 24.010679388938 76.0632521912957 2.41599826196159 0.930388620648254 2.59676248004649 0.00941069736444863 0.0348195802484599 +TR5075|c0_g1_i1 wt_GSNO wt_ph8 8.81552188359314 126.23137395943 67.5234479215117 -3.83892667969009 1.51640337447055 -2.53159993199728 0.011354345783228 0.0381918903617669 +TR1492|c0_g1_i2 wt_GSNO wt_ph8 1368.89238848897 813.514514376559 1091.20345143276 0.750717599362045 0.314762309207928 2.38503015577424 0.0170777214032423 0.0526563076599971 +TR1678|c0_g1_i1 wt_GSNO wt_ph8 0.695005959508731 7.10082184137838 3.89791390044355 -3.29023865439926 1.5074251817588 -2.18268786684349 0.0290588040465388 0.0827058269016874 +TR1479|c0_g1_i1 wt_GSNO wt_ph8 353.92669362375 305.546165789569 329.736429706659 0.212056310257658 0.102841330599285 2.0619755600394 0.0392100628615421 0.0987833713777749 +TR1859|c3_g1_i1 wt_GSNO wt_ph8 0 2.05957798928713 1.02978899464357 -3.32897459707672 1.62131131542189 -2.05326057087961 0.0400473127207196 0.0987833713777749 +TR2844|c0_g1_i1 wt_GSNO wt_ph8 220.566338218013 194.214843050373 207.390590634193 0.186796872895526 0.101161116569868 1.84652838194517 0.0648155222548659 0.149885895214377 +TR2107|c1_g1_i1 wt_GSNO wt_ph8 7.08292121571621 1.78415791317121 4.43353956444371 1.99039306371489 1.13345482120555 1.75604093473959 0.0790814192380851 0.172118383047597 +TR2672|c0_g1_i1 wt_GSNO wt_ph8 2.07518941673641 7.44710458698621 4.76114700186131 -1.80710364026684 1.37881760417113 -1.31061834052603 0.189986739707575 0.390528298287793 +TR4859|c0_g1_i1 wt_GSNO wt_ph8 3.10763825129944 1.1806627783491 2.14415051482427 1.36600125700608 1.2414304168313 1.10034460126467 0.271182006077654 0.528091274993326 +TR3091|c0_g1_i1 wt_GSNO wt_ph8 312.47018793986 293.531643106953 303.000915523406 0.0884824617062972 0.0884687505769758 1.00015498273946 0.317235511103454 0.572534846407878 +TR4163|c0_g1_i1 wt_GSNO wt_ph8 221.469120691076 207.118822998308 214.293971844692 0.0967338751775769 0.0982736079923787 0.984332183927538 0.32495221012339 0.572534846407878 +TR1894|c2_g1_i1 wt_GSNO wt_ph8 2.85762748931802 1.47338219762144 2.16550484346973 0.974874448083219 1.21963227734233 0.799318340612911 0.424105846774723 0.713268924121126 +TR3249|c0_g1_i1 wt_GSNO wt_ph8 2.06512931203634 4.15451161800812 3.10982046502223 -1.06280923847799 1.42172379433194 -0.747549729923031 0.454731796166148 0.726065302514322 +TR5212|c0_g1_i1 wt_GSNO wt_ph8 102.736339436612 86.4452993262187 94.5908193814151 0.250307109752951 0.347207101059694 0.720915871216346 0.470961277306587 0.726065302514322 +TR1122|c0_g1_i1 wt_GSNO wt_ph8 1.29006258579706 0.5946183773076 0.942340481552333 1.01745920560278 1.75106315862361 0.581052259932493 0.56120523253296 1 +TR2011|c5_g1_i1 wt_GSNO wt_ph8 7.597917075274 4.42090354598533 6.00941031062966 0.776221433822186 1.38068634268934 0.562199689981896 0.573979972628347 0.849490359489954 +TR1837|c2_g1_i1 wt_GSNO wt_ph8 2.16507864525674 1.46465683073113 1.81486773799393 0.574055870722254 1.31330872914193 0.437106567545105 0.662034064585522 0.882648546299865 +TR1982|c2_g1_i1 wt_GSNO wt_ph8 5.5352448786851 10.687042573374 8.11114372602957 -0.948745824078601 2.34310116245329 -0.404910312572778 0.685543437736556 0.882648546299865 +TR2182|c3_g2_i6 wt_GSNO wt_ph8 1.29006258579706 1.76655578876639 1.52830918728173 -0.570835750385155 1.46441538912588 -0.389804528567464 0.69668109483689 0.882648546299865 +TR1449|c0_g1_i1 wt_GSNO wt_ph8 98.9943307118646 106.843279101242 102.918804906553 -0.106933839690288 0.276431863357554 -0.386836156988073 0.69887750768045 0.882648546299865 +TR4277|c0_g1_i1 wt_GSNO wt_ph8 153.969096204861 149.159426886469 151.564261545665 0.0465928591854992 0.127909639606222 0.364263861026723 0.715660983486377 0.882648546299865 +TR3854|c0_g1_i1 wt_GSNO wt_ph8 2260.55060252051 1927.46472630351 2094.00766441201 0.229965172704227 0.793466242289153 0.289823511635197 0.771951259799022 0.910963182508483 +TR127|c1_g1_i1 wt_GSNO wt_ph8 1.20754470361908 1.49113571265046 1.34934020813477 -0.373671738849606 1.38864714646401 -0.269090488394483 0.787860049737066 0.910963182508483 +TR2090|c0_g1_i1 wt_GSNO wt_ph8 9.46045896251181 5.6546754787973 7.55756722065455 0.740040477295998 3.75055668025179 0.197314836272869 0.843581169905129 0.945833432923932 +TR3807|c0_g1_i1 wt_GSNO wt_ph8 0.347502979754365 0.292870809896544 0.320186894825454 0.331202385322154 1.89086385045429 0.175159298350635 0.86095446505486 1 +TR131|c0_g1_i1 wt_GSNO wt_ph8 1275.67603302799 1312.2934796972 1293.9847563626 -0.0408368749216097 0.405274721880973 -0.100763439506112 0.919738250126613 0.956831887096638 +TR5055|c0_g2_i1 wt_GSNO wt_ph8 5.17791343714095 5.60171771495863 5.38981557604979 -0.113901914254779 1.2463123048955 -0.0913911495596841 0.927181793948424 0.956831887096638 +TR939|c0_g1_i1 wt_GSNO wt_ph8 92.2508462008296 94.0990807885678 93.1749634946987 -0.0286723936076206 0.345661698999542 -0.0829492931690373 0.933891858779013 0.956831887096638 +TR2487|c0_g1_i1 wt_GSNO wt_ph8 875.181494043204 882.631049341941 878.906271692572 -0.0122873741271452 0.226999049805604 -0.0541296280212089 0.956831887096638 0.956831887096638