Mercurial > repos > iuc > trinity_abundance_estimates_to_matrix
changeset 11:0f445c315a08 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 482fb46ba8d588f2294e21829a0904809b0ec3f1
| author | iuc |
|---|---|
| date | Thu, 23 Aug 2018 12:56:02 -0400 |
| parents | 13ab393ba794 |
| children | d6a479fd4281 |
| files | abundance_estimates_to_matrix.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/abundance_estimates_to_matrix.xml Thu Jun 14 03:12:12 2018 -0400 +++ b/abundance_estimates_to_matrix.xml Thu Aug 23 12:56:02 2018 -0400 @@ -5,7 +5,6 @@ </macros> <expand macro="requirements"> <requirement type="package" version="3.20.7">bioconductor-edger</requirement> - <requirement type="package" version="0.9.1">salmon</requirement> <requirement type="package" version="0.44.0">kallisto</requirement> </expand> <command detect_errors="aggressive"><![CDATA[
--- a/macros.xml Thu Jun 14 03:12:12 2018 -0400 +++ b/macros.xml Thu Aug 23 12:56:02 2018 -0400 @@ -2,12 +2,12 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.6.6">trinity</requirement> + <requirement type="package" version="@WRAPPER_VERSION@">trinity</requirement> <yield/> </requirements> </xml> - <token name="@WRAPPER_VERSION@">2.6.6</token> + <token name="@WRAPPER_VERSION@">2.8.3</token> <token name="@COMMAND_PAIRED_STRAND_JACCARD@"> #if $pool.inputs.strand.is_strand_specific: @@ -28,7 +28,7 @@ </param> </when> </conditional> - <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> + <param argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/> </xml> <xml name="citation">