comparison align_and_estimate_abundance.xml @ 7:3baf18bcf03e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 6d3a6d130b58b15190bf286b9840caa162a2bea1

6:04bd98a9c751

<tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.2">
    <description>on a de novo assembly of RNA-Seq data</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="1.3.0">rsem</requirement>
        <requirement type="package" version="1.5.1">express</requirement>
        <!-- Cannot update to salmon 0.8.2 because in Bioconda it requires icu 58, while r-base 3.3.1 requires icu 54 -->
        <requirement type="package" version="0.8.1">salmon</requirement>
        <requirement type="package" version="0.43.1">kallisto</requirement>
    </expand>
    <command detect_errors="aggressive"><![CDATA[
        ln -f -s '$transcripts' input.fa &&

7:3baf18bcf03e

<tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.3">
    <description>on a de novo assembly of RNA-Seq data</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="1.3.0">rsem</requirement>
        <requirement type="package" version="1.5.1">express</requirement>
        <requirement type="package" version="0.9.1">salmon</requirement>
        <requirement type="package" version="0.43.1">kallisto</requirement>
    </expand>
    <command detect_errors="aggressive"><![CDATA[
        ln -f -s '$transcripts' input.fa &&