# HG changeset patch
# User iuc
# Date 1513264931 18000
# Node ID 3baf18bcf03e59022158d983695a457d4cf52e71
# Parent  04bd98a9c751320198937117b76b1d1b6ae7fca3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 6d3a6d130b58b15190bf286b9840caa162a2bea1

diff -r 04bd98a9c751 -r 3baf18bcf03e align_and_estimate_abundance.xml
--- a/align_and_estimate_abundance.xml	Mon Aug 28 16:54:12 2017 -0400
+++ b/align_and_estimate_abundance.xml	Thu Dec 14 10:22:11 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.2">
+<tool id="trinity_align_and_estimate_abundance" name="Align reads and estimate abundance" version="@WRAPPER_VERSION@.3">
     <description>on a de novo assembly of RNA-Seq data</description>
     <macros>
         <import>macros.xml</import>
@@ -6,8 +6,7 @@
     <expand macro="requirements">
         <requirement type="package" version="1.3.0">rsem</requirement>
         <requirement type="package" version="1.5.1">express</requirement>
-        <!-- Cannot update to salmon 0.8.2 because in Bioconda it requires icu 58, while r-base 3.3.1 requires icu 54 -->
-        <requirement type="package" version="0.8.1">salmon</requirement>
+        <requirement type="package" version="0.9.1">salmon</requirement>
         <requirement type="package" version="0.43.1">kallisto</requirement>
     </expand>
     <command detect_errors="aggressive"><![CDATA[