diff analyze_diff_expr.xml @ 10:dc0f01791c9b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 3e20977cfa8882c231128158827bbc85a770a371

--- a/analyze_diff_expr.xml	Wed Oct 17 12:57:25 2018 -0400
+++ b/analyze_diff_expr.xml	Fri Apr 26 06:45:46 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="trinity_analyze_diff_expr" name="Extract and cluster differentially expressed transcripts" version="@WRAPPER_VERSION@">
+<tool id="trinity_analyze_diff_expr" name="Extract and cluster differentially expressed transcripts" version="@WRAPPER_VERSION@+galaxy1">
     <description>from a Trinity assembly</description>
     <macros>
         <import>macros.xml</import>
@@ -92,7 +92,7 @@
             <data format="tabular" name="results_matrix_log2_sample_cor" from_work_dir="results.matrix.log2.sample_cor.dat"/>
             <data format="pdf" name="results_matrix_log2_sample_cor_matrix" from_work_dir="results.matrix.log2.sample_cor_matrix.pdf"/>
         </collection>
-        <data format="RData" name="rdata" label="${tool.name} on ${on_string}: RData file" from_work_dir="results.matrix.RData"/>
+        <data format="rdata" name="rdata" label="${tool.name} on ${on_string}: RData file" from_work_dir="results.matrix.RData"/>
         <collection name="GOseq_enrichment" type="list" label="${tool.name} on ${on_string}: GOseq enriched and depleted categories">
             <filter>additional_params['GO_enrichment']['examine_GO_enrichment'] == 'yes'</filter>
             <discover_datasets pattern="(?P&lt;name&gt;.+\.subset\.GOseq\.(enriched|depleted))$" ext="tabular" />