Mercurial > repos > iuc > trinity_contig_exn50_statistic
diff test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.DESeq2.DE_results @ 1:570f2b1f3cd9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7efdf3224552d113a01043ee5bf4517d770df933
| author | iuc |
|---|---|
| date | Fri, 31 Mar 2017 11:37:12 -0400 |
| parents | 1e8a2c87461a |
| children | afa3a9786339 |
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--- a/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.DESeq2.DE_results Thu Mar 23 10:18:11 2017 -0400 +++ b/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.DESeq2.DE_results Fri Mar 31 11:37:12 2017 -0400 @@ -1,39 +1,39 @@ -id baseMeanA baseMeanB baseMean log2FoldChange lfcSE stat pvalue padj -TR4277|c0_g1_i1 4705.34614971641 162.902721493704 2434.12443560506 -4.84860951090545 0.124597307945428 -38.9142397284305 0 0 -TR131|c0_g1_i1 32.0461070493257 1436.30905989883 734.177583474076 5.48367743370229 0.196017912869615 27.9753893581648 3.23827538807456e-172 6.15272323734167e-171 -TR4761|c0_g1_i1 2012.6141923276 384.620292965437 1198.61724264652 -2.38450946693381 0.143863830576436 -16.5747669680385 1.06073316501088e-61 1.34359534234711e-60 -TR3091|c0_g1_i1 20.4914097091341 321.651020117047 171.071214913091 3.96886910507283 0.256323110469072 15.4838519937191 4.45952081812589e-54 4.2365447772196e-53 -TR2779|c0_g1_i1 191.51955185349 1058.15934185376 624.839446853626 2.46616535412611 0.177102083131526 13.9251064161374 4.4587691300744e-44 3.38866453885655e-43 -TR1492|c0_g1_i2 2006.11782336441 890.823502721036 1448.47066304272 -1.17029110983798 0.12207086547883 -9.58698134274255 9.06997941755552e-22 5.74432029778516e-21 -TR5075|c0_g1_i1 19.3833722195684 136.98672801182 78.1850501156942 2.80049241151413 0.293976352213923 9.52625063350759 1.63066468983638e-21 8.85217974482605e-21 -TR1891|c0_g1_i1 131.416087212132 376.595292171713 254.005689691923 1.51493508389526 0.17090866237033 8.86400409952692 7.71909159725621e-19 3.6665685086967e-18 -TR2487|c0_g1_i1 418.818667162757 965.862817209246 692.340742186001 1.20547893236143 0.136832960243688 8.80985787499278 1.25304626500959e-18 5.29063978559604e-18 -TR3638|c0_g1_i1 713.131183384274 326.063958913919 519.597571149096 -1.1281436752687 0.141731779309567 -7.95970868893582 1.72444792020844e-15 6.55290209679206e-15 -TR2107|c1_g1_i1 59.5986596731862 1.89840873462066 30.7485342039034 -4.81058600791914 0.641850436461167 -7.49487066557473 6.63637683134955e-14 2.29256654173894e-13 -TR2122|c0_g2_i2 146.135958637131 360.821667264163 253.478812950647 1.30334955915215 0.177300500792357 7.35107658087526 1.96616724778278e-13 6.22619628464548e-13 -TR1479|c0_g1_i1 158.005105094407 334.827472148091 246.416288621249 1.07882286721986 0.173458235018578 6.2194963940704 4.98753084614221e-10 1.45789363194926e-09 -TR24|c0_g1_i1 85.6614643869141 199.923709280262 142.792586833588 1.22623657127381 0.213504266341901 5.74338205172044 9.2804014146814e-09 2.51896609827067e-08 -TR4163|c0_g1_i1 424.593720981574 227.471218917767 326.03246994967 -0.900786056392834 0.160721595544993 -5.60463609969988 2.08692952426197e-08 5.28688812813031e-08 -TR2278|c0_g1_i1 594.657329919233 348.341653317169 471.499491618201 -0.772446091346236 0.159105007190944 -4.85494520244241 1.20420038267752e-06 2.79113819122931e-06 -TR1449|c0_g1_i1 220.782434528097 117.26089394399 169.021664236043 -0.913694497348233 0.188477876305836 -4.84775462911953 1.24866708554995e-06 2.79113819122931e-06 -TR127|c1_g1_i1 16.3791628279609 1.58772512712498 8.98344397754296 -3.19771077466237 0.834376974262452 -3.83245328346816 0.00012687169720824 0.000267840249661839 -TR1894|c2_g1_i1 16.2826445742552 1.67571344127509 8.97917900776516 -3.15659686337855 0.834779400611257 -3.7813545244015 0.00015597736029041 0.000307529893573321 -TR5055|c0_g2_i1 28.6665933385886 6.05959103586122 17.3630921872249 -2.17768048931004 0.577307428800381 -3.77213314894485 0.000161857838722801 0.000307529893573321 -TR4084|c0_g1_i1 113.2594381118 173.837287636503 143.548362874151 0.609755827935052 0.219803235717165 2.7740985065373 0.00553549140639085 0.00984268771318224 -TR2090|c0_g1_i1 0 5.87877087384675 2.93938543692337 4.81114433617716 1.74023660764341 2.76464953963491 0.00569839814973709 0.00984268771318224 -TR1678|c0_g1_i1 0.738899982352077 7.85275634721875 4.29582816478541 3.12892233414853 1.14660116223239 2.72886722708063 0.00635522860739327 0.0104999429165628 -TR4859|c0_g1_i1 8.91205730249659 1.28188505334354 5.09697117792006 -2.61274053843141 0.973661400721484 -2.68341801009608 0.00728738414676855 0.0115383582323835 -TR2672|c0_g1_i1 22.3129914439134 7.89947501226409 15.1062332280887 -1.45907440559266 0.562189545530202 -2.59534247335852 0.0094496708578661 0.0143634997039565 -TR3807|c0_g1_i1 4.23896204531587 0.352255997713617 2.29560902151474 -3.05008419968594 1.43726100452922 -2.12215052803511 0.0338250994349076 0.0494366837894803 -TR3249|c0_g1_i1 1.36481976577862 4.37661229401476 2.87071602989669 1.51948727816201 1.15409756308282 1.31660210260141 0.187972033660362 0.255148785128113 -TR1859|c3_g1_i1 0.361569353912422 2.25550826604853 1.30853880998047 2.09887277242766 1.59427549709957 1.31650569568817 0.188004367989136 0.255148785128113 -TR1982|c2_g1_i1 7.00144976454503 11.520013112092 9.26073143831853 0.70490953188932 0.647715898283926 1.0883004937148 0.276462472665158 0.362261171078483 -TR3854|c0_g1_i1 1925.26464813324 2107.16376011081 2016.21420412203 0.130534071096341 0.124633726123269 1.04734147936199 0.29494211171073 0.373593341500258 -TR5212|c0_g1_i1 80.2050001877881 94.8352723753388 87.5201362815635 0.236773654582184 0.240888724170321 0.982917134862537 0.325648223857982 0.399181693761397 -TR1837|c2_g1_i1 0.377330628439655 1.67813520813222 1.02773291828594 1.63744709452968 1.70484764845029 0.960465350682869 0.336821061516539 0.39997501055089 -TR2844|c0_g1_i1 193.030766468894 213.82243412349 203.426600296192 0.144163413939115 0.182129405153131 0.791543868591151 0.428626687374099 0.493570124855023 -TR1122|c0_g1_i1 1.69354093201913 0.660517838352177 1.17702938518565 -1.10951489814723 1.57444243758247 -0.704703374135971 0.48099485111646 0.537582480659573 -TR2011|c5_g1_i1 6.84875389533898 4.81927837273561 5.8340161340373 -0.467994718304978 0.83497566164615 -0.560489053516039 0.575145904101733 0.62444412445331 -TR2182|c3_g2_i6 2.76248771922916 1.94482465855284 2.353656188891 -0.463555959442342 1.17585679724627 -0.394228243207794 0.69341253558072 0.731935454224094 -TR3788|c0_g1_i1 23.7579432209456 26.0024682525169 24.8802057367313 0.125242792795277 0.407913046833573 0.307033064442226 0.75881820512208 0.779326805260514 -TR939|c0_g1_i1 103.002135647151 102.820214322362 102.911174984756 -0.00127076378479059 0.216917077821033 -0.00585829293643274 0.995325785249569 0.995325785249569 +sampleA sampleB baseMeanA baseMeanB baseMean log2FoldChange lfcSE stat pvalue padj +TR4277|c0_g1_i1 wt_37 wt_ph8 4705.34614971641 162.902721493704 2434.12443560506 4.84804012036106 0.130783542648097 37.0691909868646 8.81406568413535e-301 3.34934495997143e-299 +TR131|c0_g1_i1 wt_37 wt_ph8 32.0461070493257 1436.30905989883 734.177583474076 -5.48335951236111 0.197548955320184 -27.7569653733364 1.43583336471356e-169 2.72808339295576e-168 +TR3091|c0_g1_i1 wt_37 wt_ph8 20.4914097091341 321.651020117047 171.071214913091 -3.97084930318667 0.245881056057371 -16.1494722971263 1.14537343838751e-58 1.45080635529084e-57 +TR4761|c0_g1_i1 wt_37 wt_ph8 2012.6141923276 384.620292965437 1198.61724264652 2.38432084623308 0.148099583891604 16.0994432501458 2.57410332221217e-58 2.44539815610156e-57 +TR5075|c0_g1_i1 wt_37 wt_ph8 19.3833722195684 136.98672801182 78.1850501156942 -2.80247674171473 0.269715041166808 -10.3905096637956 2.73885623424733e-25 2.08153073802797e-24 +TR2779|c0_g1_i1 wt_37 wt_ph8 191.51955185349 1058.15934185376 624.839446853626 -2.45909834872711 0.247058756007882 -9.95349603658112 2.43476309780354e-23 1.54201662860891e-22 +TR1891|c0_g1_i1 wt_37 wt_ph8 131.416087212132 376.595292171713 254.005689691923 -1.51504907455703 0.163541333568612 -9.26401320997792 1.96889433896152e-20 1.06882835543625e-19 +TR1492|c0_g1_i2 wt_37 wt_ph8 2006.11782336441 890.823502721036 1448.47066304272 1.17018000582475 0.127273970398445 9.19418167093695 3.77859650812701e-20 1.79483334136033e-19 +TR2487|c0_g1_i1 wt_37 wt_ph8 418.818667162757 965.862817209246 692.340742186001 -1.2054117169244 0.138501088570193 -8.70326529104133 3.22468912161225e-18 1.36153540690295e-17 +TR3638|c0_g1_i1 wt_37 wt_ph8 713.131183384274 326.063958913919 519.597571149096 1.12815426477841 0.141332330235517 7.98228022490288 1.43654437320665e-15 5.45886861818526e-15 +TR2107|c1_g1_i1 wt_37 wt_ph8 59.5986596731862 1.89840873462066 30.7485342039034 4.82151434610286 0.613172060454942 7.86323229164347 3.74345886500564e-15 1.29319488063831e-14 +TR2122|c0_g2_i2 wt_37 wt_ph8 146.135958637131 360.821667264163 253.478812950647 -1.30371385707787 0.169650604759161 -7.68469914344628 1.53356953387865e-14 4.85630352394907e-14 +TR1479|c0_g1_i1 wt_37 wt_ph8 158.005105094407 334.827472148091 246.416288621249 -1.0787542477693 0.165556938369539 -6.51591083039607 7.22498877976404e-11 2.1119197971618e-10 +TR24|c0_g1_i1 wt_37 wt_ph8 85.6614643869141 199.923709280262 142.792586833588 -1.2279226670979 0.196562275775691 -6.24699048814003 4.18436531652641e-10 1.13575630020003e-09 +TR4163|c0_g1_i1 wt_37 wt_ph8 424.593720981574 227.471218917767 326.03246994967 0.900981410818221 0.155876696706134 5.78009048085484 7.46604610022994e-09 1.89139834539158e-08 +TR1449|c0_g1_i1 wt_37 wt_ph8 220.782434528097 117.26089394399 169.021664236043 0.914395516820343 0.174920034977504 5.22750591113215 1.71811907274331e-07 4.08053279776536e-07 +TR2278|c0_g1_i1 wt_37 wt_ph8 594.657329919233 348.341653317169 471.499491618201 0.772496794598277 0.157892732036131 4.89254182023719 9.95419556957436e-07 2.2250554802578e-06 +TR5055|c0_g2_i1 wt_37 wt_ph8 28.6665933385886 6.05959103586122 17.3630921872249 2.18372312866756 0.505600668447204 4.31906693354301 1.5669025864333e-05 3.30790546024808e-05 +TR127|c1_g1_i1 wt_37 wt_ph8 16.3791628279609 1.58772512712498 8.98344397754296 3.22742307122337 0.758365755070441 4.25576056097574 2.08339575851481e-05 4.16679151702962e-05 +TR1894|c2_g1_i1 wt_37 wt_ph8 16.2826445742552 1.67571344127509 8.97917900776516 3.18830464179373 0.7590595028564 4.20033558607184 2.66519649541344e-05 5.06387334128554e-05 +TR2672|c0_g1_i1 wt_37 wt_ph8 22.3129914439134 7.89947501226409 15.1062332280887 1.46563545973546 0.482353842293509 3.0385068620302 0.00237753690029721 0.00429545997952877 +TR4859|c0_g1_i1 wt_37 wt_ph8 8.91205730249659 1.28188505334354 5.09697117792006 2.65126611500267 0.876469721997014 3.02493748325022 0.00248684525130613 0.00429545997952877 +TR1678|c0_g1_i1 wt_37 wt_ph8 0.738899982352077 7.85275634721875 4.29582816478541 -3.18849648433777 1.0594001628342 -3.00971870327794 0.00261489744098202 0.00432026533727463 +TR4084|c0_g1_i1 wt_37 wt_ph8 113.2594381118 173.837287636503 143.548362874151 -0.608939120027998 0.203268581921877 -2.99573654851409 0.00273782859610482 0.00433489527716597 +TR3807|c0_g1_i1 wt_37 wt_ph8 4.23896204531587 0.352255997713617 2.29560902151474 3.15525660545126 1.31164110647326 2.4055792319098 0.0161468501576278 0.0245432122395943 +TR3249|c0_g1_i1 wt_37 wt_ph8 1.36481976577862 4.37661229401476 2.87071602989669 -1.55893212196469 1.01682768784581 -1.53313303777885 0.125243078950272 0.176625758092245 +TR1859|c3_g1_i1 wt_37 wt_ph8 0.361569353912422 2.25550826604853 1.30853880998047 -2.19284922770108 1.43126836745787 -1.53210206943641 0.125497249170806 0.176625758092245 +TR2090|c0_g1_i1 wt_37 wt_ph8 0 5.87877087384675 2.93938543692337 -2.86225136793822 1.9729684338102 -1.45073348305458 0.146854088052773 0.19930197664305 +TR1982|c2_g1_i1 wt_37 wt_ph8 7.00144976454503 11.520013112092 9.26073143831853 -0.712688609925078 0.555640746749963 -1.28264281209345 0.199617243880331 0.261567423015607 +TR1837|c2_g1_i1 wt_37 wt_ph8 0.377330628439655 1.67813520813222 1.02773291828594 -1.7572235261621 1.52690431775837 -1.15084062945205 0.249797806431129 0.316410554812763 +TR5212|c0_g1_i1 wt_37 wt_ph8 80.2050001877881 94.8352723753388 87.5201362815635 -0.23592411895009 0.215502649097795 -1.09476203628025 0.273620902411289 0.335406267471903 +TR3854|c0_g1_i1 wt_37 wt_ph8 1925.26464813324 2107.16376011081 2016.21420412203 -0.130483054839334 0.130739272627028 -0.998040238540833 0.318259846991125 0.377933568301961 +TR1122|c0_g1_i1 wt_37 wt_ph8 1.69354093201913 0.660517838352177 1.17702938518565 1.18649040337028 1.40558655511286 0.84412475279761 0.398599697111289 0.448776409473292 +TR2844|c0_g1_i1 wt_37 wt_ph8 193.030766468894 213.82243412349 203.426600296192 -0.143791883173722 0.17140940841448 -0.838879758723761 0.401536787423471 0.448776409473292 +TR2011|c5_g1_i1 wt_37 wt_ph8 6.84875389533898 4.81927837273561 5.8340161340373 0.467659672901774 0.714270969980296 0.654737057162879 0.512637061952329 0.556577381548243 +TR2182|c3_g2_i6 wt_37 wt_ph8 2.76248771922916 1.94482465855284 2.353656188891 0.479324872360299 1.02378035563408 0.468191120998245 0.639647921157653 0.675183916777523 +TR3788|c0_g1_i1 wt_37 wt_ph8 23.7579432209456 26.0024682525169 24.8802057367313 -0.124358222905796 0.350105186670918 -0.355202458119214 0.72243792333433 0.741963272613636 +TR939|c0_g1_i1 wt_37 wt_ph8 103.002135647151 102.820214322362 102.911174984756 0.000971215955472081 0.195414642848595 0.00497002651037041 0.996034508905975 0.996034508905975