diff test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.DESeq2.DE_results @ 5:afa3a9786339 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
author iuc
date Thu, 14 Jun 2018 03:11:00 -0400
parents 570f2b1f3cd9
children
line wrap: on
line diff
--- a/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.DESeq2.DE_results	Mon Jan 22 11:26:13 2018 -0500
+++ b/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.DESeq2.DE_results	Thu Jun 14 03:11:00 2018 -0400
@@ -1,38 +1,38 @@
 sampleA	sampleB	baseMeanA	baseMeanB	baseMean	log2FoldChange	lfcSE	stat	pvalue	padj
-TR4277|c0_g1_i1	wt_37	wt_GSNO	3852.97388871986	161.116814813422	2007.04535176664	4.57260002898197	0.121471586836965	37.6433711623376	0	0
-TR131|c0_g1_i1	wt_37	wt_GSNO	26.1866396538608	1340.30918254958	683.247911101723	-5.67373033438939	0.187375754459626	-30.2799599166492	2.10486694333775e-201	3.89400384517483e-200
-TR4761|c0_g1_i1	wt_37	wt_GSNO	1645.20640957447	193.196157329029	919.201283451752	3.08848040390227	0.143569117275296	21.5121501233448	1.19819880470067e-102	1.47777852579749e-101
-TR3091|c0_g1_i1	wt_37	wt_GSNO	16.7444693227929	328.569936894811	172.657203108802	-4.29037251456992	0.240582794801874	-17.8332474610379	3.90090325510546e-71	3.60833551097255e-70
-TR3638|c0_g1_i1	wt_37	wt_GSNO	583.00358519031	183.754416330029	383.37900076017	1.66018954854466	0.144513974558734	11.4880900176883	1.51422805973163e-30	1.12052876420141e-29
-TR2487|c0_g1_i1	wt_37	wt_GSNO	342.210853400436	920.407318992504	631.30908619647	-1.42691086642688	0.124648977132644	-11.4474334186348	2.42211055832184e-30	1.49363484429847e-29
-TR3788|c0_g1_i1	wt_37	wt_GSNO	19.5075441237117	134.95369713876	77.2306206312357	-2.77036684869735	0.263152237265066	-10.527620351967	6.4442989603998e-26	3.40627230763989e-25
-TR1479|c0_g1_i1	wt_37	wt_GSNO	129.593534475689	371.064629188207	250.329081831948	-1.51441062491813	0.145530800926874	-10.4061175728641	2.32511621828936e-25	1.07536625095883e-24
-TR2107|c1_g1_i1	wt_37	wt_GSNO	48.9228907410258	7.40521775805688	28.1640542495414	2.69488884014666	0.432209832999676	6.23514005094067	4.51374085119887e-10	1.85564901660398e-09
-TR3854|c0_g1_i1	wt_37	wt_GSNO	1573.69549271337	2374.56159860719	1974.12854566028	-0.593515573382884	0.111170659243154	-5.33877893163104	9.35746583039244e-08	3.4622623572452e-07
-TR2122|c0_g2_i2	wt_37	wt_GSNO	119.534640490118	199.143666337033	159.339153413576	-0.738644008220832	0.168659021315898	-4.37951081690053	1.18946017688789e-05	4.00091150407745e-05
-TR1449|c0_g1_i1	wt_37	wt_GSNO	180.814952011467	104.755290736358	142.785121373912	0.784193680180578	0.186004942516637	4.21598302480827	2.48692468039376e-05	7.49709472786912e-05
-TR4163|c0_g1_i1	wt_37	wt_GSNO	347.283468916919	232.772947466212	290.028208191566	0.576743600823335	0.13722219355458	4.20299068163444	2.63411436384591e-05	7.49709472786912e-05
-TR2672|c0_g1_i1	wt_37	wt_GSNO	18.3155337236093	2.26581902751323	10.2906763755613	2.88788179640237	0.725539563189254	3.98032298019437	6.88216980025882e-05	0.000181885916149697
-TR127|c1_g1_i1	wt_37	wt_GSNO	13.461799216177	1.21881296083961	7.34030608850831	3.33150202228086	0.915899815581865	3.63740877070095	0.000275394687501815	0.000667511143840185
-TR5055|c0_g2_i1	wt_37	wt_GSNO	23.3590211688541	5.52768338415684	14.4433522765055	2.04460941512382	0.563987307210913	3.62527558507482	0.000288653467606567	0.000667511143840185
-TR2844|c0_g1_i1	wt_37	wt_GSNO	158.206282615139	231.762548186068	194.984415400603	-0.550639207704626	0.154913717539885	-3.55448966333699	0.000378713397971402	0.000824258572055403
-TR5212|c0_g1_i1	wt_37	wt_GSNO	65.7079302129484	107.875371765755	86.7916509893515	-0.713874873222434	0.210087143945163	-3.39799408862815	0.000678818868686303	0.00139534989674407
-TR1894|c2_g1_i1	wt_37	wt_GSNO	13.3497721959996	2.96749216411516	8.15863218005739	2.04972102673103	0.716146945354672	2.86215146210796	0.00420775772107294	0.00819405450945783
-TR24|c0_g1_i1	wt_37	wt_GSNO	69.9065207344592	41.2394742844514	55.5729975094553	0.760351613917761	0.269735390145923	2.81887969356346	0.00481915767774413	0.00891544170382664
-TR2779|c0_g1_i1	wt_37	wt_GSNO	155.915506826481	205.619872596257	180.767689711369	-0.402350189521528	0.18910416680051	-2.12766432558821	0.0333649247395808	0.0587858197792614
-TR3807|c0_g1_i1	wt_37	wt_GSNO	3.48709246029019	0.350050334268211	1.9185713972792	2.6523001983829	1.38324824664578	1.91744338358239	0.055181627150862	0.092164962039527
-TR1492|c0_g1_i2	wt_37	wt_GSNO	1640.89375005483	1435.64893261411	1538.27134133447	0.192484568368337	0.101250195527162	1.90107848548993	0.057291733159706	0.092164962039527
-TR4084|c0_g1_i1	wt_37	wt_GSNO	93.2264707954139	121.352438036668	107.289454416041	-0.380198430346905	0.213412163689062	-1.78152183912463	0.0748272403991533	0.115358662282028
-TR1891|c0_g1_i1	wt_37	wt_GSNO	107.628573623499	135.399287466928	121.513930545214	-0.328810062058933	0.189329296532127	-1.73670989161013	0.0824383909023624	0.122008818535496
-TR4669|c0_g2_i1	wt_37	wt_GSNO	0	167.096667347181	83.5483336735905	-3.46077834317638	2.04233842282563	-1.69451757088734	0.0901669757000038	0.128314542342313
-TR1837|c2_g1_i1	wt_37	wt_GSNO	0.308903905435236	2.22601224010275	1.26745807276899	-2.41951712666755	1.51166579847997	-1.60056351681732	0.1094736282342	0.150019416469089
-TR5075|c0_g1_i1	wt_37	wt_GSNO	15.8633018853512	9.23822794034992	12.5507649128506	0.764028730403883	0.508108615055784	1.50367206491864	0.132665825459353	0.172493073735055
-TR4859|c0_g1_i1	wt_37	wt_GSNO	7.32690480813971	3.17910584569163	5.25300532691567	1.18248087647214	0.791530422232021	1.49391715499409	0.135197274008557	0.172493073735055
-TR939|c0_g1_i1	wt_37	wt_GSNO	84.2568220960088	96.9171174594069	90.5869697777078	-0.202690605185084	0.202556787736977	-1.00066064163834	0.316990901598642	0.384256032989688
-TR2278|c0_g1_i1	wt_37	wt_GSNO	486.5272515724	448.140178813055	467.333715192727	0.118822806572317	0.119966033346418	0.99047041281427	0.321944243856225	0.384256032989688
-TR2011|c5_g1_i1	wt_37	wt_GSNO	5.60408627995835	7.88255079488408	6.74331853742122	-0.48861876789566	0.691406970296359	-0.706702114510391	0.479751615248569	0.554712805131158
-TR2182|c3_g2_i6	wt_37	wt_GSNO	2.24974854180929	1.3031439398571	1.77644624083319	0.779605221657958	1.28583289420755	0.606303684693354	0.544313112275579	0.605163179078445
-TR3249|c0_g1_i1	wt_37	wt_GSNO	1.12573841927462	2.128954842887	1.62734663108081	-0.761341397480685	1.29336792501876	-0.58865028485196	0.556095894288301	0.605163179078445
-TR1678|c0_g1_i1	wt_37	wt_GSNO	0.595141051681226	0.700100668536423	0.647620860108824	-0.247288262290953	1.73789746083653	-0.14229162989393	0.886849657633351	0.935371730620685
-TR1122|c0_g1_i1	wt_37	wt_GSNO	1.41370386226057	1.3031439398571	1.35842390105883	0.162148276801819	1.43591594510694	0.112923237153511	0.910091413576882	0.935371730620685
-TR1982|c2_g1_i1	wt_37	wt_GSNO	5.73684100209948	5.71221669652109	5.72452884931028	-0.0101267142582557	0.715373046105777	-0.0141558510114153	0.988705642243408	0.988705642243408
+TR4277|c0_g1_i1	wt_37	wt_GSNO	3852.97388871986	161.116814813422	2007.04535176664	4.57661492404411	0.121615845393926	37.6317321909822	0	0
+TR131|c0_g1_i1	wt_37	wt_GSNO	26.1866396538608	1340.30918254958	683.247911101723	-5.68565819121436	0.188173369545147	-30.2149990987446	1.50487696827007e-200	2.48304699764561e-199
+TR4761|c0_g1_i1	wt_37	wt_GSNO	1645.20640957447	193.196157329029	919.201283451752	3.09227622940716	0.143766888218038	21.5089598706302	1.28350063536341e-102	1.41185069889975e-101
+TR3091|c0_g1_i1	wt_37	wt_GSNO	16.7444693227929	328.569936894811	172.657203108802	-4.30529554105297	0.242003292489129	-17.790235400398	8.41257542125902e-71	6.94037472253869e-70
+TR3638|c0_g1_i1	wt_37	wt_GSNO	583.00358519031	183.754416330029	383.37900076017	1.66225356244238	0.144704273829595	11.487245804501	1.5290952692426e-30	1.00920287770012e-29
+TR2487|c0_g1_i1	wt_37	wt_GSNO	342.210853400436	920.407318992504	631.30908619647	-1.42823125318501	0.124766100464837	-11.44727011475	2.42667678803784e-30	1.33467223342081e-29
+TR3788|c0_g1_i1	wt_37	wt_GSNO	19.5075441237117	134.95369713876	77.2306206312357	-2.78185518936858	0.26452057618315	-10.5165928091827	7.24461724546031e-26	3.41531955857415e-25
+TR1479|c0_g1_i1	wt_37	wt_GSNO	129.593534475689	371.064629188207	250.329081831948	-1.51632040995179	0.145721574162902	-10.405599985193	2.33778717307793e-25	9.64337208894648e-25
+TR2107|c1_g1_i1	wt_37	wt_GSNO	48.9228907410258	7.40521775805688	28.1640542495414	2.72565745131165	0.439033221898883	6.20831708252687	5.35550100392654e-10	1.96368370143973e-09
+TR3854|c0_g1_i1	wt_37	wt_GSNO	1573.69549271337	2374.56159860719	1974.12854566028	-0.593952181868433	0.11125243839418	-5.33877900063632	9.35746226940931e-08	3.08796254890507e-07
+TR2122|c0_g2_i2	wt_37	wt_GSNO	119.534640490118	199.143666337033	159.339153413576	-0.73989736621081	0.168946597067547	-4.37947481070002	1.18965671308434e-05	3.56897013925302e-05
+TR1449|c0_g1_i1	wt_37	wt_GSNO	180.814952011467	104.755290736358	142.785121373912	0.785811747593425	0.186397685526418	4.2157806057203	2.48915666101662e-05	6.6882655779165e-05
+TR4163|c0_g1_i1	wt_37	wt_GSNO	347.283468916919	232.772947466212	290.028208191566	0.5773903092812	0.137377906430929	4.20293425836637	2.63477128827014e-05	6.6882655779165e-05
+TR2672|c0_g1_i1	wt_37	wt_GSNO	18.3155337236093	2.26581902751323	10.2906763755613	2.9857084616452	0.761209385049731	3.92232218924907	8.76996107235725e-05	0.000206720510991278
+TR5055|c0_g2_i1	wt_37	wt_GSNO	23.3590211688541	5.52768338415684	14.4433522765055	2.08513896568298	0.577312677901881	3.61180179389265	0.00030407694239889	0.000668969273277559
+TR2844|c0_g1_i1	wt_37	wt_GSNO	158.206282615139	231.762548186068	194.984415400603	-0.551426184671915	0.155135532159318	-3.55448024702441	0.000378726959348647	0.000781124353656584
+TR127|c1_g1_i1	wt_37	wt_GSNO	13.461799216177	1.21881296083961	7.34030608850831	3.52517488060096	1.00261297574214	3.51598769005717	0.00043812129728732	0.000850470753557739
+TR5212|c0_g1_i1	wt_37	wt_GSNO	65.7079302129484	107.875371765755	86.7916509893515	-0.715754705745061	0.210644233010842	-3.39793164766215	0.000678973819799399	0.0012447853362989
+TR1894|c2_g1_i1	wt_37	wt_GSNO	13.3497721959996	2.96749216411516	8.15863218005739	2.116499695166	0.744618031030184	2.84239651333424	0.00447757649596373	0.00777684338772647
+TR24|c0_g1_i1	wt_37	wt_GSNO	69.9065207344592	41.2394742844514	55.5729975094553	0.763675526543044	0.270944643994893	2.81856660933825	0.00482386011442888	0.00795936918880766
+TR4669|c0_g2_i1	wt_37	wt_GSNO	0	167.096667347181	83.5483336735905	-10.0466852501689	3.90738405199054	-2.57120495873725	0.0101345328521317	0.0159256944819212
+TR2779|c0_g1_i1	wt_37	wt_GSNO	155.915506826481	205.619872596257	180.767689711369	-0.403209397282846	0.18950756245476	-2.12766916559914	0.033364523163095	0.0500467847446426
+TR3807|c0_g1_i1	wt_37	wt_GSNO	3.48709246029019	0.350050334268211	1.9185713972792	3.04810928058763	1.5874506366217	1.92012854464212	0.0548416645360559	0.0786858665082542
+TR1492|c0_g1_i2	wt_37	wt_GSNO	1640.89375005483	1435.64893261411	1538.27134133447	0.192601921423703	0.101311986688049	1.90107733270247	0.0572918841322824	0.0787763406818883
+TR4084|c0_g1_i1	wt_37	wt_GSNO	93.2264707954139	121.352438036668	107.289454416041	-0.381231151484282	0.21399248813321	-1.78151651401411	0.0748281095286258	0.0987731045777861
+TR1891|c0_g1_i1	wt_37	wt_GSNO	107.628573623499	135.399287466928	121.513930545214	-0.329513668205708	0.189733845104182	-1.7367152814764	0.0824374390602291	0.104632134191829
+TR1837|c2_g1_i1	wt_37	wt_GSNO	0.308903905435236	2.22601224010275	1.26745807276899	-2.87715913917267	1.7927876855897	-1.60485213184979	0.108526350064413	1
+TR5075|c0_g1_i1	wt_37	wt_GSNO	15.8633018853512	9.23822794034992	12.5507649128506	0.776103293030194	0.516446682273215	1.5027752518693	0.13289700980576	0.16070937436521
+TR4859|c0_g1_i1	wt_37	wt_GSNO	7.32690480813971	3.17910584569163	5.25300532691567	1.23041974278822	0.82607009598701	1.48948587869905	0.13635946915836	0.16070937436521
+TR939|c0_g1_i1	wt_37	wt_GSNO	84.2568220960088	96.9171174594069	90.5869697777078	-0.203187486812458	0.203052234052517	-1.00066609835923	0.316988262617008	0.354139456794138
+TR2278|c0_g1_i1	wt_37	wt_GSNO	486.5272515724	448.140178813055	467.333715192727	0.118924512672215	0.120068895863502	0.990468945491189	0.321944960721944	0.354139456794138
+TR2011|c5_g1_i1	wt_37	wt_GSNO	5.60408627995835	7.88255079488408	6.74331853742122	-0.50342873702063	0.712267625142964	-0.706797163383052	0.479692537619295	0.510640443272153
+TR2182|c3_g2_i6	wt_37	wt_GSNO	2.24974854180929	1.3031439398571	1.77644624083319	0.878491642458712	1.45214866443311	0.604959852923637	0.545205672528741	0.562243349795264
+TR3249|c0_g1_i1	wt_37	wt_GSNO	1.12573841927462	2.128954842887	1.62734663108081	-0.858277190977929	1.45820967054459	-0.588582841216099	0.556141147160533	1
+TR1678|c0_g1_i1	wt_37	wt_GSNO	0.595141051681226	0.700100668536423	0.647620860108824	-0.322353878735801	2.26929239960538	-0.142050393678601	0.887040200834538	1
+TR1122|c0_g1_i1	wt_37	wt_GSNO	1.41370386226057	1.3031439398571	1.35842390105883	0.189589394350501	1.67633508161709	0.113097552171736	0.909953215626095	1
+TR1982|c2_g1_i1	wt_37	wt_GSNO	5.73684100209948	5.71221669652109	5.72452884931028	-0.0104554076697487	0.738553450989727	-0.0141566025529196	0.988705042660126	0.988705042660126