Mercurial > repos > iuc > trinity_contig_exn50_statistic
diff test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.DESeq2.DE_results @ 5:afa3a9786339 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
| author | iuc |
|---|---|
| date | Thu, 14 Jun 2018 03:11:00 -0400 |
| parents | 570f2b1f3cd9 |
| children | 41db7569b4ba |
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--- a/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.DESeq2.DE_results Mon Jan 22 11:26:13 2018 -0500 +++ b/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_GSNO.DESeq2.DE_results Thu Jun 14 03:11:00 2018 -0400 @@ -1,38 +1,38 @@ sampleA sampleB baseMeanA baseMeanB baseMean log2FoldChange lfcSE stat pvalue padj -TR4277|c0_g1_i1 wt_37 wt_GSNO 3852.97388871986 161.116814813422 2007.04535176664 4.57260002898197 0.121471586836965 37.6433711623376 0 0 -TR131|c0_g1_i1 wt_37 wt_GSNO 26.1866396538608 1340.30918254958 683.247911101723 -5.67373033438939 0.187375754459626 -30.2799599166492 2.10486694333775e-201 3.89400384517483e-200 -TR4761|c0_g1_i1 wt_37 wt_GSNO 1645.20640957447 193.196157329029 919.201283451752 3.08848040390227 0.143569117275296 21.5121501233448 1.19819880470067e-102 1.47777852579749e-101 -TR3091|c0_g1_i1 wt_37 wt_GSNO 16.7444693227929 328.569936894811 172.657203108802 -4.29037251456992 0.240582794801874 -17.8332474610379 3.90090325510546e-71 3.60833551097255e-70 -TR3638|c0_g1_i1 wt_37 wt_GSNO 583.00358519031 183.754416330029 383.37900076017 1.66018954854466 0.144513974558734 11.4880900176883 1.51422805973163e-30 1.12052876420141e-29 -TR2487|c0_g1_i1 wt_37 wt_GSNO 342.210853400436 920.407318992504 631.30908619647 -1.42691086642688 0.124648977132644 -11.4474334186348 2.42211055832184e-30 1.49363484429847e-29 -TR3788|c0_g1_i1 wt_37 wt_GSNO 19.5075441237117 134.95369713876 77.2306206312357 -2.77036684869735 0.263152237265066 -10.527620351967 6.4442989603998e-26 3.40627230763989e-25 -TR1479|c0_g1_i1 wt_37 wt_GSNO 129.593534475689 371.064629188207 250.329081831948 -1.51441062491813 0.145530800926874 -10.4061175728641 2.32511621828936e-25 1.07536625095883e-24 -TR2107|c1_g1_i1 wt_37 wt_GSNO 48.9228907410258 7.40521775805688 28.1640542495414 2.69488884014666 0.432209832999676 6.23514005094067 4.51374085119887e-10 1.85564901660398e-09 -TR3854|c0_g1_i1 wt_37 wt_GSNO 1573.69549271337 2374.56159860719 1974.12854566028 -0.593515573382884 0.111170659243154 -5.33877893163104 9.35746583039244e-08 3.4622623572452e-07 -TR2122|c0_g2_i2 wt_37 wt_GSNO 119.534640490118 199.143666337033 159.339153413576 -0.738644008220832 0.168659021315898 -4.37951081690053 1.18946017688789e-05 4.00091150407745e-05 -TR1449|c0_g1_i1 wt_37 wt_GSNO 180.814952011467 104.755290736358 142.785121373912 0.784193680180578 0.186004942516637 4.21598302480827 2.48692468039376e-05 7.49709472786912e-05 -TR4163|c0_g1_i1 wt_37 wt_GSNO 347.283468916919 232.772947466212 290.028208191566 0.576743600823335 0.13722219355458 4.20299068163444 2.63411436384591e-05 7.49709472786912e-05 -TR2672|c0_g1_i1 wt_37 wt_GSNO 18.3155337236093 2.26581902751323 10.2906763755613 2.88788179640237 0.725539563189254 3.98032298019437 6.88216980025882e-05 0.000181885916149697 -TR127|c1_g1_i1 wt_37 wt_GSNO 13.461799216177 1.21881296083961 7.34030608850831 3.33150202228086 0.915899815581865 3.63740877070095 0.000275394687501815 0.000667511143840185 -TR5055|c0_g2_i1 wt_37 wt_GSNO 23.3590211688541 5.52768338415684 14.4433522765055 2.04460941512382 0.563987307210913 3.62527558507482 0.000288653467606567 0.000667511143840185 -TR2844|c0_g1_i1 wt_37 wt_GSNO 158.206282615139 231.762548186068 194.984415400603 -0.550639207704626 0.154913717539885 -3.55448966333699 0.000378713397971402 0.000824258572055403 -TR5212|c0_g1_i1 wt_37 wt_GSNO 65.7079302129484 107.875371765755 86.7916509893515 -0.713874873222434 0.210087143945163 -3.39799408862815 0.000678818868686303 0.00139534989674407 -TR1894|c2_g1_i1 wt_37 wt_GSNO 13.3497721959996 2.96749216411516 8.15863218005739 2.04972102673103 0.716146945354672 2.86215146210796 0.00420775772107294 0.00819405450945783 -TR24|c0_g1_i1 wt_37 wt_GSNO 69.9065207344592 41.2394742844514 55.5729975094553 0.760351613917761 0.269735390145923 2.81887969356346 0.00481915767774413 0.00891544170382664 -TR2779|c0_g1_i1 wt_37 wt_GSNO 155.915506826481 205.619872596257 180.767689711369 -0.402350189521528 0.18910416680051 -2.12766432558821 0.0333649247395808 0.0587858197792614 -TR3807|c0_g1_i1 wt_37 wt_GSNO 3.48709246029019 0.350050334268211 1.9185713972792 2.6523001983829 1.38324824664578 1.91744338358239 0.055181627150862 0.092164962039527 -TR1492|c0_g1_i2 wt_37 wt_GSNO 1640.89375005483 1435.64893261411 1538.27134133447 0.192484568368337 0.101250195527162 1.90107848548993 0.057291733159706 0.092164962039527 -TR4084|c0_g1_i1 wt_37 wt_GSNO 93.2264707954139 121.352438036668 107.289454416041 -0.380198430346905 0.213412163689062 -1.78152183912463 0.0748272403991533 0.115358662282028 -TR1891|c0_g1_i1 wt_37 wt_GSNO 107.628573623499 135.399287466928 121.513930545214 -0.328810062058933 0.189329296532127 -1.73670989161013 0.0824383909023624 0.122008818535496 -TR4669|c0_g2_i1 wt_37 wt_GSNO 0 167.096667347181 83.5483336735905 -3.46077834317638 2.04233842282563 -1.69451757088734 0.0901669757000038 0.128314542342313 -TR1837|c2_g1_i1 wt_37 wt_GSNO 0.308903905435236 2.22601224010275 1.26745807276899 -2.41951712666755 1.51166579847997 -1.60056351681732 0.1094736282342 0.150019416469089 -TR5075|c0_g1_i1 wt_37 wt_GSNO 15.8633018853512 9.23822794034992 12.5507649128506 0.764028730403883 0.508108615055784 1.50367206491864 0.132665825459353 0.172493073735055 -TR4859|c0_g1_i1 wt_37 wt_GSNO 7.32690480813971 3.17910584569163 5.25300532691567 1.18248087647214 0.791530422232021 1.49391715499409 0.135197274008557 0.172493073735055 -TR939|c0_g1_i1 wt_37 wt_GSNO 84.2568220960088 96.9171174594069 90.5869697777078 -0.202690605185084 0.202556787736977 -1.00066064163834 0.316990901598642 0.384256032989688 -TR2278|c0_g1_i1 wt_37 wt_GSNO 486.5272515724 448.140178813055 467.333715192727 0.118822806572317 0.119966033346418 0.99047041281427 0.321944243856225 0.384256032989688 -TR2011|c5_g1_i1 wt_37 wt_GSNO 5.60408627995835 7.88255079488408 6.74331853742122 -0.48861876789566 0.691406970296359 -0.706702114510391 0.479751615248569 0.554712805131158 -TR2182|c3_g2_i6 wt_37 wt_GSNO 2.24974854180929 1.3031439398571 1.77644624083319 0.779605221657958 1.28583289420755 0.606303684693354 0.544313112275579 0.605163179078445 -TR3249|c0_g1_i1 wt_37 wt_GSNO 1.12573841927462 2.128954842887 1.62734663108081 -0.761341397480685 1.29336792501876 -0.58865028485196 0.556095894288301 0.605163179078445 -TR1678|c0_g1_i1 wt_37 wt_GSNO 0.595141051681226 0.700100668536423 0.647620860108824 -0.247288262290953 1.73789746083653 -0.14229162989393 0.886849657633351 0.935371730620685 -TR1122|c0_g1_i1 wt_37 wt_GSNO 1.41370386226057 1.3031439398571 1.35842390105883 0.162148276801819 1.43591594510694 0.112923237153511 0.910091413576882 0.935371730620685 -TR1982|c2_g1_i1 wt_37 wt_GSNO 5.73684100209948 5.71221669652109 5.72452884931028 -0.0101267142582557 0.715373046105777 -0.0141558510114153 0.988705642243408 0.988705642243408 +TR4277|c0_g1_i1 wt_37 wt_GSNO 3852.97388871986 161.116814813422 2007.04535176664 4.57661492404411 0.121615845393926 37.6317321909822 0 0 +TR131|c0_g1_i1 wt_37 wt_GSNO 26.1866396538608 1340.30918254958 683.247911101723 -5.68565819121436 0.188173369545147 -30.2149990987446 1.50487696827007e-200 2.48304699764561e-199 +TR4761|c0_g1_i1 wt_37 wt_GSNO 1645.20640957447 193.196157329029 919.201283451752 3.09227622940716 0.143766888218038 21.5089598706302 1.28350063536341e-102 1.41185069889975e-101 +TR3091|c0_g1_i1 wt_37 wt_GSNO 16.7444693227929 328.569936894811 172.657203108802 -4.30529554105297 0.242003292489129 -17.790235400398 8.41257542125902e-71 6.94037472253869e-70 +TR3638|c0_g1_i1 wt_37 wt_GSNO 583.00358519031 183.754416330029 383.37900076017 1.66225356244238 0.144704273829595 11.487245804501 1.5290952692426e-30 1.00920287770012e-29 +TR2487|c0_g1_i1 wt_37 wt_GSNO 342.210853400436 920.407318992504 631.30908619647 -1.42823125318501 0.124766100464837 -11.44727011475 2.42667678803784e-30 1.33467223342081e-29 +TR3788|c0_g1_i1 wt_37 wt_GSNO 19.5075441237117 134.95369713876 77.2306206312357 -2.78185518936858 0.26452057618315 -10.5165928091827 7.24461724546031e-26 3.41531955857415e-25 +TR1479|c0_g1_i1 wt_37 wt_GSNO 129.593534475689 371.064629188207 250.329081831948 -1.51632040995179 0.145721574162902 -10.405599985193 2.33778717307793e-25 9.64337208894648e-25 +TR2107|c1_g1_i1 wt_37 wt_GSNO 48.9228907410258 7.40521775805688 28.1640542495414 2.72565745131165 0.439033221898883 6.20831708252687 5.35550100392654e-10 1.96368370143973e-09 +TR3854|c0_g1_i1 wt_37 wt_GSNO 1573.69549271337 2374.56159860719 1974.12854566028 -0.593952181868433 0.11125243839418 -5.33877900063632 9.35746226940931e-08 3.08796254890507e-07 +TR2122|c0_g2_i2 wt_37 wt_GSNO 119.534640490118 199.143666337033 159.339153413576 -0.73989736621081 0.168946597067547 -4.37947481070002 1.18965671308434e-05 3.56897013925302e-05 +TR1449|c0_g1_i1 wt_37 wt_GSNO 180.814952011467 104.755290736358 142.785121373912 0.785811747593425 0.186397685526418 4.2157806057203 2.48915666101662e-05 6.6882655779165e-05 +TR4163|c0_g1_i1 wt_37 wt_GSNO 347.283468916919 232.772947466212 290.028208191566 0.5773903092812 0.137377906430929 4.20293425836637 2.63477128827014e-05 6.6882655779165e-05 +TR2672|c0_g1_i1 wt_37 wt_GSNO 18.3155337236093 2.26581902751323 10.2906763755613 2.9857084616452 0.761209385049731 3.92232218924907 8.76996107235725e-05 0.000206720510991278 +TR5055|c0_g2_i1 wt_37 wt_GSNO 23.3590211688541 5.52768338415684 14.4433522765055 2.08513896568298 0.577312677901881 3.61180179389265 0.00030407694239889 0.000668969273277559 +TR2844|c0_g1_i1 wt_37 wt_GSNO 158.206282615139 231.762548186068 194.984415400603 -0.551426184671915 0.155135532159318 -3.55448024702441 0.000378726959348647 0.000781124353656584 +TR127|c1_g1_i1 wt_37 wt_GSNO 13.461799216177 1.21881296083961 7.34030608850831 3.52517488060096 1.00261297574214 3.51598769005717 0.00043812129728732 0.000850470753557739 +TR5212|c0_g1_i1 wt_37 wt_GSNO 65.7079302129484 107.875371765755 86.7916509893515 -0.715754705745061 0.210644233010842 -3.39793164766215 0.000678973819799399 0.0012447853362989 +TR1894|c2_g1_i1 wt_37 wt_GSNO 13.3497721959996 2.96749216411516 8.15863218005739 2.116499695166 0.744618031030184 2.84239651333424 0.00447757649596373 0.00777684338772647 +TR24|c0_g1_i1 wt_37 wt_GSNO 69.9065207344592 41.2394742844514 55.5729975094553 0.763675526543044 0.270944643994893 2.81856660933825 0.00482386011442888 0.00795936918880766 +TR4669|c0_g2_i1 wt_37 wt_GSNO 0 167.096667347181 83.5483336735905 -10.0466852501689 3.90738405199054 -2.57120495873725 0.0101345328521317 0.0159256944819212 +TR2779|c0_g1_i1 wt_37 wt_GSNO 155.915506826481 205.619872596257 180.767689711369 -0.403209397282846 0.18950756245476 -2.12766916559914 0.033364523163095 0.0500467847446426 +TR3807|c0_g1_i1 wt_37 wt_GSNO 3.48709246029019 0.350050334268211 1.9185713972792 3.04810928058763 1.5874506366217 1.92012854464212 0.0548416645360559 0.0786858665082542 +TR1492|c0_g1_i2 wt_37 wt_GSNO 1640.89375005483 1435.64893261411 1538.27134133447 0.192601921423703 0.101311986688049 1.90107733270247 0.0572918841322824 0.0787763406818883 +TR4084|c0_g1_i1 wt_37 wt_GSNO 93.2264707954139 121.352438036668 107.289454416041 -0.381231151484282 0.21399248813321 -1.78151651401411 0.0748281095286258 0.0987731045777861 +TR1891|c0_g1_i1 wt_37 wt_GSNO 107.628573623499 135.399287466928 121.513930545214 -0.329513668205708 0.189733845104182 -1.7367152814764 0.0824374390602291 0.104632134191829 +TR1837|c2_g1_i1 wt_37 wt_GSNO 0.308903905435236 2.22601224010275 1.26745807276899 -2.87715913917267 1.7927876855897 -1.60485213184979 0.108526350064413 1 +TR5075|c0_g1_i1 wt_37 wt_GSNO 15.8633018853512 9.23822794034992 12.5507649128506 0.776103293030194 0.516446682273215 1.5027752518693 0.13289700980576 0.16070937436521 +TR4859|c0_g1_i1 wt_37 wt_GSNO 7.32690480813971 3.17910584569163 5.25300532691567 1.23041974278822 0.82607009598701 1.48948587869905 0.13635946915836 0.16070937436521 +TR939|c0_g1_i1 wt_37 wt_GSNO 84.2568220960088 96.9171174594069 90.5869697777078 -0.203187486812458 0.203052234052517 -1.00066609835923 0.316988262617008 0.354139456794138 +TR2278|c0_g1_i1 wt_37 wt_GSNO 486.5272515724 448.140178813055 467.333715192727 0.118924512672215 0.120068895863502 0.990468945491189 0.321944960721944 0.354139456794138 +TR2011|c5_g1_i1 wt_37 wt_GSNO 5.60408627995835 7.88255079488408 6.74331853742122 -0.50342873702063 0.712267625142964 -0.706797163383052 0.479692537619295 0.510640443272153 +TR2182|c3_g2_i6 wt_37 wt_GSNO 2.24974854180929 1.3031439398571 1.77644624083319 0.878491642458712 1.45214866443311 0.604959852923637 0.545205672528741 0.562243349795264 +TR3249|c0_g1_i1 wt_37 wt_GSNO 1.12573841927462 2.128954842887 1.62734663108081 -0.858277190977929 1.45820967054459 -0.588582841216099 0.556141147160533 1 +TR1678|c0_g1_i1 wt_37 wt_GSNO 0.595141051681226 0.700100668536423 0.647620860108824 -0.322353878735801 2.26929239960538 -0.142050393678601 0.887040200834538 1 +TR1122|c0_g1_i1 wt_37 wt_GSNO 1.41370386226057 1.3031439398571 1.35842390105883 0.189589394350501 1.67633508161709 0.113097552171736 0.909953215626095 1 +TR1982|c2_g1_i1 wt_37 wt_GSNO 5.73684100209948 5.71221669652109 5.72452884931028 -0.0104554076697487 0.738553450989727 -0.0141566025529196 0.988705042660126 0.988705042660126