diff test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.DESeq2.DE_results @ 5:afa3a9786339 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
author iuc
date Thu, 14 Jun 2018 03:11:00 -0400
parents 570f2b1f3cd9
children
line wrap: on
line diff
--- a/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.DESeq2.DE_results	Mon Jan 22 11:26:13 2018 -0500
+++ b/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.DESeq2.DE_results	Thu Jun 14 03:11:00 2018 -0400
@@ -1,39 +1,39 @@
 sampleA	sampleB	baseMeanA	baseMeanB	baseMean	log2FoldChange	lfcSE	stat	pvalue	padj
-TR4277|c0_g1_i1	wt_37	wt_ph8	4705.34614971641	162.902721493704	2434.12443560506	4.84804012036106	0.130783542648097	37.0691909868646	8.81406568413535e-301	3.34934495997143e-299
-TR131|c0_g1_i1	wt_37	wt_ph8	32.0461070493257	1436.30905989883	734.177583474076	-5.48335951236111	0.197548955320184	-27.7569653733364	1.43583336471356e-169	2.72808339295576e-168
-TR3091|c0_g1_i1	wt_37	wt_ph8	20.4914097091341	321.651020117047	171.071214913091	-3.97084930318667	0.245881056057371	-16.1494722971263	1.14537343838751e-58	1.45080635529084e-57
-TR4761|c0_g1_i1	wt_37	wt_ph8	2012.6141923276	384.620292965437	1198.61724264652	2.38432084623308	0.148099583891604	16.0994432501458	2.57410332221217e-58	2.44539815610156e-57
-TR5075|c0_g1_i1	wt_37	wt_ph8	19.3833722195684	136.98672801182	78.1850501156942	-2.80247674171473	0.269715041166808	-10.3905096637956	2.73885623424733e-25	2.08153073802797e-24
-TR2779|c0_g1_i1	wt_37	wt_ph8	191.51955185349	1058.15934185376	624.839446853626	-2.45909834872711	0.247058756007882	-9.95349603658112	2.43476309780354e-23	1.54201662860891e-22
-TR1891|c0_g1_i1	wt_37	wt_ph8	131.416087212132	376.595292171713	254.005689691923	-1.51504907455703	0.163541333568612	-9.26401320997792	1.96889433896152e-20	1.06882835543625e-19
-TR1492|c0_g1_i2	wt_37	wt_ph8	2006.11782336441	890.823502721036	1448.47066304272	1.17018000582475	0.127273970398445	9.19418167093695	3.77859650812701e-20	1.79483334136033e-19
-TR2487|c0_g1_i1	wt_37	wt_ph8	418.818667162757	965.862817209246	692.340742186001	-1.2054117169244	0.138501088570193	-8.70326529104133	3.22468912161225e-18	1.36153540690295e-17
-TR3638|c0_g1_i1	wt_37	wt_ph8	713.131183384274	326.063958913919	519.597571149096	1.12815426477841	0.141332330235517	7.98228022490288	1.43654437320665e-15	5.45886861818526e-15
-TR2107|c1_g1_i1	wt_37	wt_ph8	59.5986596731862	1.89840873462066	30.7485342039034	4.82151434610286	0.613172060454942	7.86323229164347	3.74345886500564e-15	1.29319488063831e-14
-TR2122|c0_g2_i2	wt_37	wt_ph8	146.135958637131	360.821667264163	253.478812950647	-1.30371385707787	0.169650604759161	-7.68469914344628	1.53356953387865e-14	4.85630352394907e-14
-TR1479|c0_g1_i1	wt_37	wt_ph8	158.005105094407	334.827472148091	246.416288621249	-1.0787542477693	0.165556938369539	-6.51591083039607	7.22498877976404e-11	2.1119197971618e-10
-TR24|c0_g1_i1	wt_37	wt_ph8	85.6614643869141	199.923709280262	142.792586833588	-1.2279226670979	0.196562275775691	-6.24699048814003	4.18436531652641e-10	1.13575630020003e-09
-TR4163|c0_g1_i1	wt_37	wt_ph8	424.593720981574	227.471218917767	326.03246994967	0.900981410818221	0.155876696706134	5.78009048085484	7.46604610022994e-09	1.89139834539158e-08
-TR1449|c0_g1_i1	wt_37	wt_ph8	220.782434528097	117.26089394399	169.021664236043	0.914395516820343	0.174920034977504	5.22750591113215	1.71811907274331e-07	4.08053279776536e-07
-TR2278|c0_g1_i1	wt_37	wt_ph8	594.657329919233	348.341653317169	471.499491618201	0.772496794598277	0.157892732036131	4.89254182023719	9.95419556957436e-07	2.2250554802578e-06
-TR5055|c0_g2_i1	wt_37	wt_ph8	28.6665933385886	6.05959103586122	17.3630921872249	2.18372312866756	0.505600668447204	4.31906693354301	1.5669025864333e-05	3.30790546024808e-05
-TR127|c1_g1_i1	wt_37	wt_ph8	16.3791628279609	1.58772512712498	8.98344397754296	3.22742307122337	0.758365755070441	4.25576056097574	2.08339575851481e-05	4.16679151702962e-05
-TR1894|c2_g1_i1	wt_37	wt_ph8	16.2826445742552	1.67571344127509	8.97917900776516	3.18830464179373	0.7590595028564	4.20033558607184	2.66519649541344e-05	5.06387334128554e-05
-TR2672|c0_g1_i1	wt_37	wt_ph8	22.3129914439134	7.89947501226409	15.1062332280887	1.46563545973546	0.482353842293509	3.0385068620302	0.00237753690029721	0.00429545997952877
-TR4859|c0_g1_i1	wt_37	wt_ph8	8.91205730249659	1.28188505334354	5.09697117792006	2.65126611500267	0.876469721997014	3.02493748325022	0.00248684525130613	0.00429545997952877
-TR1678|c0_g1_i1	wt_37	wt_ph8	0.738899982352077	7.85275634721875	4.29582816478541	-3.18849648433777	1.0594001628342	-3.00971870327794	0.00261489744098202	0.00432026533727463
-TR4084|c0_g1_i1	wt_37	wt_ph8	113.2594381118	173.837287636503	143.548362874151	-0.608939120027998	0.203268581921877	-2.99573654851409	0.00273782859610482	0.00433489527716597
-TR3807|c0_g1_i1	wt_37	wt_ph8	4.23896204531587	0.352255997713617	2.29560902151474	3.15525660545126	1.31164110647326	2.4055792319098	0.0161468501576278	0.0245432122395943
-TR3249|c0_g1_i1	wt_37	wt_ph8	1.36481976577862	4.37661229401476	2.87071602989669	-1.55893212196469	1.01682768784581	-1.53313303777885	0.125243078950272	0.176625758092245
-TR1859|c3_g1_i1	wt_37	wt_ph8	0.361569353912422	2.25550826604853	1.30853880998047	-2.19284922770108	1.43126836745787	-1.53210206943641	0.125497249170806	0.176625758092245
-TR2090|c0_g1_i1	wt_37	wt_ph8	0	5.87877087384675	2.93938543692337	-2.86225136793822	1.9729684338102	-1.45073348305458	0.146854088052773	0.19930197664305
-TR1982|c2_g1_i1	wt_37	wt_ph8	7.00144976454503	11.520013112092	9.26073143831853	-0.712688609925078	0.555640746749963	-1.28264281209345	0.199617243880331	0.261567423015607
-TR1837|c2_g1_i1	wt_37	wt_ph8	0.377330628439655	1.67813520813222	1.02773291828594	-1.7572235261621	1.52690431775837	-1.15084062945205	0.249797806431129	0.316410554812763
-TR5212|c0_g1_i1	wt_37	wt_ph8	80.2050001877881	94.8352723753388	87.5201362815635	-0.23592411895009	0.215502649097795	-1.09476203628025	0.273620902411289	0.335406267471903
-TR3854|c0_g1_i1	wt_37	wt_ph8	1925.26464813324	2107.16376011081	2016.21420412203	-0.130483054839334	0.130739272627028	-0.998040238540833	0.318259846991125	0.377933568301961
-TR1122|c0_g1_i1	wt_37	wt_ph8	1.69354093201913	0.660517838352177	1.17702938518565	1.18649040337028	1.40558655511286	0.84412475279761	0.398599697111289	0.448776409473292
-TR2844|c0_g1_i1	wt_37	wt_ph8	193.030766468894	213.82243412349	203.426600296192	-0.143791883173722	0.17140940841448	-0.838879758723761	0.401536787423471	0.448776409473292
-TR2011|c5_g1_i1	wt_37	wt_ph8	6.84875389533898	4.81927837273561	5.8340161340373	0.467659672901774	0.714270969980296	0.654737057162879	0.512637061952329	0.556577381548243
-TR2182|c3_g2_i6	wt_37	wt_ph8	2.76248771922916	1.94482465855284	2.353656188891	0.479324872360299	1.02378035563408	0.468191120998245	0.639647921157653	0.675183916777523
-TR3788|c0_g1_i1	wt_37	wt_ph8	23.7579432209456	26.0024682525169	24.8802057367313	-0.124358222905796	0.350105186670918	-0.355202458119214	0.72243792333433	0.741963272613636
-TR939|c0_g1_i1	wt_37	wt_ph8	103.002135647151	102.820214322362	102.911174984756	0.000971215955472081	0.195414642848595	0.00497002651037041	0.996034508905975	0.996034508905975
+TR4277|c0_g1_i1	wt_37	wt_ph8	4705.34614971641	162.902721493704	2434.12443560506	4.85332629705957	0.130960775627329	37.0593887659196	1.26787233139066e-300	4.81791485928452e-299
+TR131|c0_g1_i1	wt_37	wt_ph8	32.0461070493257	1436.30905989883	734.177583474076	-5.49708942597102	0.198466854292743	-27.6977707212645	7.42748041559505e-169	1.41122127896306e-167
+TR3091|c0_g1_i1	wt_37	wt_ph8	20.4914097091341	321.651020117047	171.071214913091	-3.98630633515117	0.247421953542878	-16.1113687693051	2.12272588309166e-58	2.47056970916163e-57
+TR4761|c0_g1_i1	wt_37	wt_ph8	2012.6141923276	384.620292965437	1198.61724264652	2.3876556238738	0.148312557773369	16.0988095662291	2.60059969385434e-58	2.47056970916163e-57
+TR5075|c0_g1_i1	wt_37	wt_ph8	19.3833722195684	136.98672801182	78.1850501156942	-2.81556781738656	0.271397918695418	-10.3743161735385	3.24527446090745e-25	2.46640859028966e-24
+TR2779|c0_g1_i1	wt_37	wt_ph8	191.51955185349	1058.15934185376	624.839446853626	-2.46872482043468	0.248047686960726	-9.95262181511717	2.45625242439133e-23	1.55562653544784e-22
+TR1891|c0_g1_i1	wt_37	wt_ph8	131.416087212132	376.595292171713	254.005689691923	-1.51763504949468	0.1638333296262	-9.26328637132193	1.98234808919548e-20	1.07613181984897e-19
+TR1492|c0_g1_i2	wt_37	wt_ph8	2006.11782336441	890.823502721036	1448.47066304272	1.17138763330801	0.12740597231583	9.19413440371721	3.78025797563847e-20	1.79562253842827e-19
+TR2487|c0_g1_i1	wt_37	wt_ph8	418.818667162757	965.862817209246	692.340742186001	-1.2068861494209	0.138672539999103	-8.70313725722989	3.22833072204789e-18	1.36307297153133e-17
+TR3638|c0_g1_i1	wt_37	wt_ph8	713.131183384274	326.063958913919	519.597571149096	1.12959116050602	0.141514345090045	7.98216717737888	1.43786102301427e-15	5.46387188745423e-15
+TR2122|c0_g2_i2	wt_37	wt_ph8	146.135958637131	360.821667264163	253.478812950647	-1.30611123021679	0.169971549866392	-7.68429323168187	1.53843927144304e-14	5.31460839225778e-14
+TR2107|c1_g1_i1	wt_37	wt_ph8	59.5986596731862	1.89840873462066	30.7485342039034	4.94663101068376	0.648801734442531	7.62425676148051	2.45444399373987e-14	7.77240598017624e-14
+TR1479|c0_g1_i1	wt_37	wt_ph8	158.005105094407	334.827472148091	246.416288621249	-1.08064044509537	0.1658526880096	-6.5156643408325	7.23686413447617e-11	2.11539105469303e-10
+TR24|c0_g1_i1	wt_37	wt_ph8	85.6614643869141	199.923709280262	142.792586833588	-1.2309601921531	0.197065470330035	-6.24645296860761	4.19878369504606e-10	1.13966986008393e-09
+TR4163|c0_g1_i1	wt_37	wt_ph8	424.593720981574	227.471218917767	326.03246994967	0.902378343080323	0.156120482680011	5.78001251078543	7.46950706226027e-09	1.89227512243927e-08
+TR1449|c0_g1_i1	wt_37	wt_ph8	220.782434528097	117.26089394399	169.021664236043	0.916182468982544	0.175267159439457	5.22734819182726	1.71958482582468e-07	4.0840139613336e-07
+TR2278|c0_g1_i1	wt_37	wt_ph8	594.657329919233	348.341653317169	471.499491618201	0.77372548280461	0.158144801146882	4.8925129197639	9.95565784679233e-07	2.22538234222417e-06
+TR5055|c0_g2_i1	wt_37	wt_ph8	28.6665933385886	6.05959103586122	17.3630921872249	2.22056293047175	0.515653625436263	4.30630722045843	1.66002467176804e-05	3.50449652928809e-05
+TR127|c1_g1_i1	wt_37	wt_ph8	16.3791628279609	1.58772512712498	8.98344397754296	3.35782864860774	0.805715621214412	4.16751091848842	3.07943766984562e-05	6.15887533969124e-05
+TR1894|c2_g1_i1	wt_37	wt_ph8	16.2826445742552	1.67571344127509	8.97917900776516	3.31835899440704	0.806156235895963	4.1162728099709	3.85048512190331e-05	7.31592173161629e-05
+TR2672|c0_g1_i1	wt_37	wt_ph8	22.3129914439134	7.89947501226409	15.1062332280887	1.4879160019133	0.490304786216723	3.03467566244728	0.00240794483755529	0.00435723351557623
+TR4084|c0_g1_i1	wt_37	wt_ph8	113.2594381118	173.837287636503	143.548362874151	-0.610546095515356	0.203809508378262	-2.99567032163292	0.00273842322103228	0.00473000374541939
+TR4859|c0_g1_i1	wt_37	wt_ph8	8.91205730249659	1.28188505334354	5.09697117792006	2.79846628921536	0.943303749490582	2.96666507551426	0.00301048704228202	0.00497384815681378
+TR1678|c0_g1_i1	wt_37	wt_ph8	0.738899982352077	7.85275634721875	4.29582816478541	-3.47431884008145	1.21198503063676	-2.8666351087324	0.00414861034620894	0.00656863304816415
+TR3807|c0_g1_i1	wt_37	wt_ph8	4.23896204531587	0.352255997713617	2.29560902151474	3.60257127355045	1.494771199452	2.41011552461754	0.0159474699414718	0.0242401543110371
+TR1859|c3_g1_i1	wt_37	wt_ph8	0.361569353912422	2.25550826604853	1.30853880998047	-2.58650633406891	1.68391965639604	-1.53600340980911	0.124537544060973	0.181135380859875
+TR3249|c0_g1_i1	wt_37	wt_ph8	1.36481976577862	4.37661229401476	2.87071602989669	-1.67837058189371	1.10474169040967	-1.51924254915312	0.12870145482149	0.181135380859875
+TR2090|c0_g1_i1	wt_37	wt_ph8	0	5.87877087384675	2.93938543692337	-4.93100736412614	3.57047444665656	-1.38105101655149	0.167263275059569	0.227000159009415
+TR1982|c2_g1_i1	wt_37	wt_ph8	7.00144976454503	11.520013112092	9.26073143831853	-0.727260398375603	0.567300823658434	-1.28196605406919	0.199854554547715	0.261878381821143
+TR1837|c2_g1_i1	wt_37	wt_ph8	0.377330628439655	1.67813520813222	1.02773291828594	-2.14007669057536	1.85335822648042	-1.15470212935543	0.248212427250959	0.314402407851215
+TR5212|c0_g1_i1	wt_37	wt_ph8	80.2050001877881	94.8352723753388	87.5201362815635	-0.236625075567938	0.21614403033503	-1.09475646956875	0.273623341840838	0.335409257740381
+TR3854|c0_g1_i1	wt_37	wt_ph8	1925.26464813324	2107.16376011081	2016.21420412203	-0.130625245556183	0.13088163358419	-0.998041069468758	0.318259444082768	0.377933089848287
+TR2844|c0_g1_i1	wt_37	wt_ph8	193.030766468894	213.82243412349	203.426600296192	-0.144061748535941	0.17173092225162	-0.838880654963596	0.401536284440308	0.450271927171228
+TR1122|c0_g1_i1	wt_37	wt_ph8	1.69354093201913	0.660517838352177	1.17702938518565	1.3946217378633	1.66721495733336	0.836497856337578	0.402874882205836	0.450271927171228
+TR2011|c5_g1_i1	wt_37	wt_ph8	6.84875389533898	4.81927837273561	5.8340161340373	0.48395696149425	0.739237535887472	0.654670438120067	0.512679962329315	0.556623959100399
+TR2182|c3_g2_i6	wt_37	wt_ph8	2.76248771922916	1.94482465855284	2.353656188891	0.516404389322083	1.10366040723297	0.467901526536393	0.63985501178297	0.675402512437579
+TR3788|c0_g1_i1	wt_37	wt_ph8	23.7579432209456	26.0024682525169	24.8802057367313	-0.125340757750783	0.352879389384874	-0.355194328490741	0.722444013290729	0.741969527163451
+TR939|c0_g1_i1	wt_37	wt_ph8	103.002135647151	102.820214322362	102.911174984756	0.000973457550309434	0.195891269167835	0.00496937691222674	0.996035027203904	0.996035027203904