# HG changeset patch
# User iuc
# Date 1631313807 0
# Node ID 34840e9c79b043cf8b847b9407cd06e830c66298
# Parent  b1e9a0355166cf48980b7fdc2ed3ca545dcb0b96
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 33aaad8d6afce20732d8232fbcd777a3aabf09ec"

diff -r b1e9a0355166 -r 34840e9c79b0 contig_exn50_statistic.xml
--- a/contig_exn50_statistic.xml	Fri Mar 19 21:49:29 2021 +0000
+++ b/contig_exn50_statistic.xml	Fri Sep 10 22:43:27 2021 +0000
@@ -1,12 +1,14 @@
 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@">
     <description>from a Trinity assembly</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
     <command detect_errors="aggressive"><![CDATA[
+    ln -s '$matrix' 'matrix.tabular' &&
     contig_ExN50_statistic.pl
-        '$matrix'
+        'matrix.tabular'
         '$transcripts'
         > '$output'
     ]]></command>
diff -r b1e9a0355166 -r 34840e9c79b0 macros.xml
--- a/macros.xml	Fri Mar 19 21:49:29 2021 +0000
+++ b/macros.xml	Fri Sep 10 22:43:27 2021 +0000
@@ -6,7 +6,11 @@
             <yield/>
         </requirements>
     </xml>
-
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">trinity</xref>
+        </xrefs>
+    </xml>
     <token name="@WRAPPER_VERSION@">2.9.1</token>
 
     <token name="@COMMAND_PAIRED_STRAND_JACCARD@">