Mercurial > repos > iuc > trinity_define_clusters_by_cutting_tree
diff define_clusters_by_cutting_tree.xml @ 3:b99f4e461291 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit bc4ea54f0deec4ddec8e6cf79fd547491e165686
author | iuc |
---|---|
date | Mon, 28 Aug 2017 16:55:25 -0400 |
parents | cd71eff81169 |
children | 75e332bfe023 |
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--- a/define_clusters_by_cutting_tree.xml Fri Mar 31 11:36:26 2017 -0400 +++ b/define_clusters_by_cutting_tree.xml Mon Aug 28 16:55:25 2017 -0400 @@ -5,6 +5,7 @@ </macros> <expand macro="requirements"> <requirement type="package" version="2.34.0">bioconductor-biobase</requirement> + <requirement type="package" version="2.0.6">r-cluster</requirement> </expand> <command detect_errors="aggressive"><![CDATA[ @@ -45,7 +46,7 @@ <when value="-K"> <param name="k" type="integer" argument="-K" value="2" label="Define K clusters via k-means algorithm" help="This does not leverage the already hierarchically clustered genes, and instead uses a least-sum-of-squares method to define exactly k gene clusters."/> </when> - </conditional> + </conditional> <section name="additional_params" title="Additional Options" expanded="False"> <param name="column_ordering" type="select" label="Column ordering in expression matrices" argument="--no_column_reordering / --lexical_column_ordering"> <option value="">Order based on sample clustering</option>