diff filter_low_expr_transcripts.xml @ 19:aa38fa8c5815 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70

--- a/filter_low_expr_transcripts.xml	Sun Dec 19 16:22:52 2021 +0000
+++ b/filter_low_expr_transcripts.xml	Tue Apr 11 19:51:03 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="trinity_filter_low_expr_transcripts" name="Filter low expression transcripts" version="@WRAPPER_VERSION@">
+<tool id="trinity_filter_low_expr_transcripts" name="Filter low expression transcripts" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
     <description>from a Trinity assembly</description>
     <macros>
         <import>macros.xml</import>
@@ -34,8 +34,7 @@
     <inputs>
         <param argument="--transcripts" name="assembly" type="data" format="fasta" label="Trinity assembly"/>
         <param argument="--matrix" type="data" format="tabular" label="Expression matrix"/>
-
-        <param name="min_expr_any" type="float" argument="--min_expr_any" optional="true" label="Minimum expression level required across any sample"/>
+        <param argument="--min_expr_any" type="float" optional="true" label="Minimum expression level required across any sample"/>
 
         <conditional name="isoform_filter">
             <param name="isoform_mode" type="select" label="Isoform filtering method">
@@ -61,7 +60,6 @@
                     <param argument="--gene_to_trans_map" name="gene_trans_map" type="data" format="tabular" label="Gene to transcript correspondence ('gene(tab)transcript' lines)" />
                 </when>
             </conditional>
-
         </section>
     </inputs>
     <outputs>