Mercurial > repos > iuc > trinity_run_de_analysis
comparison tool_dependencies.xml @ 0:1563554bb3f0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit e23a8ad798830209db722d5496d19ec7a5e06214
| author | iuc |
|---|---|
| date | Mon, 01 Aug 2016 14:43:38 -0400 |
| parents | |
| children | 18213f29e0b9 |
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| -1:000000000000 | 0:1563554bb3f0 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="trinity" version="2.2.0"> | |
| 4 <repository changeset_revision="729219ec7049" name="package_trinity_2_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="bowtie" version="1.1.2"> | |
| 7 <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="bowtie2" version="2.2.6"> | |
| 10 <repository changeset_revision="0d9cd7487cc9" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 <package name="samtools" version="1.2"> | |
| 13 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 14 </package> | |
| 15 <package name="bioconductor-edger" version="3.14.0"> | |
| 16 <repository changeset_revision="8ed6cfd2b21f" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 17 </package> | |
| 18 <package name="rsem" version="1.2.28"> | |
| 19 <repository changeset_revision="4567331d510a" name="package_rsem_1_2_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 20 </package> | |
| 21 <package name="eXpress" version="1.5.1"> | |
| 22 <repository changeset_revision="93017e8743e5" name="package_express_1_5_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 23 </package> | |
| 24 <package name="bioconductor-limma" version="3.28.10"> | |
| 25 <repository changeset_revision="fc78b4bbe0ab" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 26 </package> | |
| 27 <package name="deseq2" version="1.10.0"> | |
| 28 <repository changeset_revision="e4a11a7d33d6" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 29 </package> | |
| 30 <set_environment version="1.0"> | |
| 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable> | |
| 32 </set_environment> | |
| 33 </tool_dependency> |