Mercurial > repos > iuc > trinity_samples_qccheck

annotate test-data/count/trinityStats/statsfile.txt @ 20:04bb8bb7c198 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
author iuc
date Tue, 08 Aug 2023 09:11:17 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
20
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
1
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
2
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
3 ################################
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
4 ## Counts of transcripts, etc.
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
5 ################################
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
6 Total trinity 'genes': 7
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
7 Total trinity transcripts: 7
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
8 Percent GC: 42.12
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
9
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
10 ########################################
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
11 Stats based on ALL transcript contigs:
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
12 ########################################
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
13
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
14 Contig N10: 541
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
15 Contig N20: 541
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
16 Contig N30: 380
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
17 Contig N40: 380
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
18 Contig N50: 279
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
19
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
20 Median contig length: 240
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
21 Average contig: 298.14
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
22 Total assembled bases: 2087
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
23
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
24
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
25 #####################################################
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
26 ## Stats based on ONLY LONGEST ISOFORM per 'GENE':
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
27 #####################################################
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
28
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
29 Contig N10: 541
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
30 Contig N20: 541
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
31 Contig N30: 380
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
32 Contig N40: 380
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
33 Contig N50: 279
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
34
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
35 Median contig length: 240
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
36 Average contig: 298.14
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
37 Total assembled bases: 2087
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
38
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
39
04bb8bb7c198 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents:
diff changeset
40