Mercurial > repos > iuc > trinity_samples_qccheck

comparison test-data/count/trinityStats/statsfile.txt @ 20:04bb8bb7c198 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
author iuc
date Tue, 08 Aug 2023 09:11:17 +0000
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19:1b1a25f93f80 20:04bb8bb7c198
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3 ################################
4 ## Counts of transcripts, etc.
5 ################################
6 Total trinity 'genes': 7
7 Total trinity transcripts: 7
8 Percent GC: 42.12
9
10 ########################################
11 Stats based on ALL transcript contigs:
12 ########################################
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14 Contig N10: 541
15 Contig N20: 541
16 Contig N30: 380
17 Contig N40: 380
18 Contig N50: 279
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20 Median contig length: 240
21 Average contig: 298.14
22 Total assembled bases: 2087
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25 #####################################################
26 ## Stats based on ONLY LONGEST ISOFORM per 'GENE':
27 #####################################################
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29 Contig N10: 541
30 Contig N20: 541
31 Contig N30: 380
32 Contig N40: 380
33 Contig N50: 279
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35 Median contig length: 240
36 Average contig: 298.14
37 Total assembled bases: 2087
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